RLG00000032556

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015504
Physical Location & Seq
Forward (+)
16414271 .. 16416618
2348 bp
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UTR
Exon/CDS
Intron
RLM00000032556

Sequence Viewer

Length: 468 bp
ATGTGGGCAGCTGCAGTCCCTTTTCCATCGTACAACTATGGAAAACCCATTAACACTCTTCAAGCTTCTGGGTCAAACCGTAGGGTGCCCAAGTCTTTGAAGCTCAGAGCTTCCTTCTACGACTATCCTCTCGCAAGCAGAATCATGGTCAAAAATATACCATATTCCACCAGTGAAAATAGTTTGCAGCAGAAGTTTTCAAATTTCGGAGAGATAGCCGAAGTTAAACTAGTGAAGGATGAAACTTCAAAGAGGTCTAAGGGGTTTGCATTTATTCAGTATACCAGCCAAGATGATGCAATGCTTGCCCTGGAAAACATGGACCACCAGACTTTTGATGGCAGGGTCATCTATGTAGAGCTTGCAAAACCTGGTAAAGATGCTTATGCAGGATACCCAAAAACATCTGGACCCCCAAAGAAGCAGTATATGCAGCAGCAAGAGGAAGTTACAGACTGCTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

156

Amino Acids

17.65

Weight (kDa)

9.04

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 117 9.4e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 2 cut(s) 32, 464
AgsI TTSAA 4 cut(s) 62, 100, 201, 249
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 2 cut(s) 309, 370
AluBI AGCT 5 cut(s) 11, 65, 103, 110, 361
AluI AGCT 5 cut(s) 11, 65, 103, 110, 361
ApeKI GCWGC 5 cut(s) 8, 11, 187, 433, 436
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 322, 410
AvaII GGWCC 2 cut(s) 322, 410
BaeGI GKGCMC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 20, 199, 445, 448
BccI CCATC 2 cut(s) 34, 332
BciT130I CCWGG 2 cut(s) 311, 372
BciVI GTATCC 1 cut(s) 386
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 5 cut(s) 9, 12, 188, 434, 437
BlsI GCNGC 5 cut(s) 10, 13, 189, 435, 438
Bme1390I CCNGG 2 cut(s) 311, 372
Bme18I GGWCC 2 cut(s) 322, 410
BmgT120I GGNCC 2 cut(s) 322, 410
BmiI GGNNCC 2 cut(s) 87, 412
BmrFI CCNGG 2 cut(s) 311, 372
BmsI GCATC 2 cut(s) 286, 370
BsaJI CCNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 311, 372
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 4 cut(s) 20, 199, 445, 448
BshNI GGYRCC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 87, 412
BspMAI CTGCAG 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 309
BssNAI GTATAC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 311, 372
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 2 cut(s) 305, 430
BstC8I GCNNGC 3 cut(s) 136, 306, 363
BstDEI CTNAG 2 cut(s) 104, 258
BstF5I GGATG 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 305, 430
BstNI CCWGG 2 cut(s) 311, 372
BstSCI CCNGG 2 cut(s) 309, 370
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 20, 199, 445, 448
BstZ17I GTATAC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 136, 306, 363
Cfr13I GGNCC 2 cut(s) 322, 410
CsiI ACCWGGT 1 cut(s) 370
Csp6I GTAC 2 cut(s) 31, 463
CviAII CATG 2 cut(s) 145, 319
CviJI RGCY 7 cut(s) 11, 65, 103, 110, 218, 288, 361
CviKI_1 RGCY 7 cut(s) 11, 65, 103, 110, 218, 288, 361
CviQI GTAC 2 cut(s) 31, 463
DdeI CTNAG 2 cut(s) 104, 258
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 322, 410
EcoRII CCWGG 2 cut(s) 309, 370
FaeI CATG 2 cut(s) 148, 322
FaqI GGGAC 1 cut(s) 2
FatI CATG 2 cut(s) 144, 318
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 5 cut(s) 9, 12, 188, 434, 437
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 9, 12, 188, 434, 437
FspBI CTAG 1 cut(s) 230
GluI GCNGC 5 cut(s) 9, 12, 188, 434, 437
Hin1II CATG 2 cut(s) 148, 322
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 107, 209
Hpy188III TCNNGA 1 cut(s) 408
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 2 cut(s) 124, 229
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 7 cut(s) 14, 187, 269, 299, 365, 389, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 430
HpyF3I CTNAG 2 cut(s) 104, 258
Hsp92II CATG 2 cut(s) 148, 322
Lsp1109I GCAGC 4 cut(s) 20, 199, 445, 448
LweI GCATC 2 cut(s) 286, 370
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 448
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 202
MnlI CCTC 3 cut(s) 138, 246, 436
MseI TTAA 2 cut(s) 51, 225
MspA1I CMGCKG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 311, 372
MvaI CCWGG 2 cut(s) 311, 372
MwoI GCNNNNNNNGC 2 cut(s) 305, 430
NlaIII CATG 2 cut(s) 148, 322
NlaIV GGNNCC 2 cut(s) 87, 412
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 5 cut(s) 10, 13, 189, 435, 438
Psp6I CCWGG 2 cut(s) 309, 370
PspGI CCWGG 2 cut(s) 309, 370
PspN4I GGNNCC 2 cut(s) 87, 412
PspPI GGNCC 2 cut(s) 322, 410
PstI CTGCAG 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 32, 464
RsaNI GTAC 2 cut(s) 31, 463
SaqAI TTAA 2 cut(s) 51, 225
SatI GCNGC 5 cut(s) 9, 12, 188, 434, 437
Sau96I GGNCC 2 cut(s) 322, 410
ScrFI CCNGG 2 cut(s) 311, 372
SduI GDGCHC 1 cut(s) 90
SetI ASST 7 cut(s) 13, 67, 105, 112, 257, 363, 373
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 2 cut(s) 286, 370
SfcI CTRYAG 1 cut(s) 12
SinI GGWCC 2 cut(s) 322, 410
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 309, 370
TaaI ACNGT 1 cut(s) 80
TasI AATT 1 cut(s) 202
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 51, 225
Tru9I TTAA 2 cut(s) 51, 225
TscAI CASTG 1 cut(s) 178
TseI GCWGC 5 cut(s) 8, 11, 187, 433, 436
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 322, 410
XapI RAATTY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.