MD10G1228700.v1.1

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015504
Physical Location & Seq
Reverse (-)
32539437 .. 32541707
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1228700.v1.1.491

Sequence Viewer

Length: 459 bp
ATGTGGGCGGCAACGGTCTCCTTCCCTTGTTACGCACACCCGAAACCGATTCATCTGTCGAATCGTACGGACTCCAAGCCTTTGAAGCTCCAAATGAGAGCTTCCTTTTTCGACTATCCTCTCGCAAGCAAAATCTTGGTTAAAAATATACCATATTCCACCAGTGAAAATAGTTTGCAGCAGAAATTTTCGAGTTTCGGCCAGATAGCTGAAGTTAAACTAGTCAAGGATGAATCCTCAAGAAGATCCAAGGGGTTTGCATTTATTCAATATACCTGTCAAGATGATGCTATGCTCGCCCTGGAAAATATGGATCGCCAGAATCTTGACGGCAGGATCATCTACGTAGAGCTTGCTAGACCTGGGAAAGACGCTTATGGAGAATATCCAAGAACCTCTGGTCCCCCAAAGAAGCAGAATTTGCCACAGCAAGAGGAAGTTTCGGACTGCTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

153

Amino Acids

17.41

Weight (kDa)

8.72

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 45 - 114 8.4e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 240, 321, 344
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 185, 418
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 67, 455
AgsI TTSAA 2 cut(s) 85, 269
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 2 cut(s) 300, 361
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 4 cut(s) 88, 101, 209, 352
AluI AGCT 4 cut(s) 88, 101, 209, 352
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 3 cut(s) 240, 321, 344
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 185, 418
AspS9I GGNCC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 302, 363
BcoDI GTCTC 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 357
BisI GCNGC 2 cut(s) 9, 179
BlsI GCNGC 2 cut(s) 10, 180
Bme1390I CCNGG 2 cut(s) 302, 363
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 2 cut(s) 302, 363
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 249, 300, 362
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 302, 363
BseDI CCNNGG 3 cut(s) 249, 300, 362
BseGI GGATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 201
BsiWI CGTACG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 245, 313, 336
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 3 cut(s) 240, 321, 344
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 249, 300, 362
BssMI GATC 3 cut(s) 245, 313, 336
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 302, 363
Bst4CI ACNGT 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 127, 297, 354
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 248, 316, 339
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 245, 313, 336
BstMWI GCNNNNNNNGC 3 cut(s) 85, 296, 421
BstNI CCWGG 2 cut(s) 302, 363
BstSCI CCNGG 2 cut(s) 300, 361
BstSNI TACGTA 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 127, 297, 354
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 66, 454
CviJI RGCY 6 cut(s) 79, 88, 101, 201, 209, 352
CviKI_1 RGCY 6 cut(s) 79, 88, 101, 201, 209, 352
CviQI GTAC 2 cut(s) 66, 454
DpnI GATC 3 cut(s) 247, 315, 338
DpnII GATC 3 cut(s) 245, 313, 336
EaeI YGGCCR 1 cut(s) 199
Eco105I TACGTA 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 300, 361
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 6 cut(s) 149, 154, 273, 293, 311, 378
FaqI GGGAC 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 9, 179
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 9, 179
FspBI CTAG 2 cut(s) 221, 357
GluI GCNGC 2 cut(s) 9, 179
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 1 cut(s) 380
HinfI GANTC 5 cut(s) 49, 61, 71, 233, 322
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 3 cut(s) 240, 281, 326
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 178, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 296, 421
HpySE526I ACGT 1 cut(s) 345
Kzo9I GATC 3 cut(s) 245, 313, 336
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 221, 357
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 247, 315, 338
MboI GATC 3 cut(s) 245, 313, 336
MboII GAAGA 1 cut(s) 255
MflI RGATCY 1 cut(s) 245
MluCI AATT 2 cut(s) 185, 418
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 4 cut(s) 129, 247, 406, 427
MseI TTAA 2 cut(s) 141, 216
MspR9I CCNGG 2 cut(s) 302, 363
MvaI CCWGG 2 cut(s) 302, 363
MwoI GCNNNNNNNGC 3 cut(s) 85, 296, 421
NdeII GATC 3 cut(s) 245, 313, 336
NlaIV GGNNCC 1 cut(s) 403
PfeI GAWTC 4 cut(s) 49, 61, 233, 322
Pfl23II CGTACG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 10, 180
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 300, 361
PspGI CCWGG 2 cut(s) 300, 361
PspLI CGTACG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 67, 455
RsaNI GTAC 2 cut(s) 66, 454
SaqAI TTAA 2 cut(s) 141, 216
SatI GCNGC 2 cut(s) 9, 179
Sau3AI GATC 3 cut(s) 245, 313, 336
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 302, 363
SetI ASST 8 cut(s) 90, 103, 211, 278, 348, 354, 364, 398
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SnaBI TACGTA 1 cut(s) 346
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 2 cut(s) 185, 418
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 221, 357
StyD4I CCNGG 2 cut(s) 300, 361
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 59, 111, 191
TasI AATT 2 cut(s) 185, 418
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 4 cut(s) 49, 61, 233, 322
Tru1I TTAA 2 cut(s) 141, 216
Tru9I TTAA 2 cut(s) 141, 216
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 41, 246
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 185, 418
XspI CTAG 2 cut(s) 221, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.