pycom10g19220

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015504
Physical Location & Seq
Reverse (-)
22356988 .. 22358802
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19220.1

Sequence Viewer

Length: 459 bp
ATGTGGGCGGCAACGGTCTCCTTCCCTTGTTACGCATACCCGAAACCGATTCATCTGTCGAATCGTACGGACTCCAAGCCTTTGAAGCTCCAAGTGAGAGCTTCCTTTTTCGACTATCCTCTCGCAAGCAAAATCTTGGTTAAAAATATACCATATTCCACCAGTGAAAATAGTTTGCAGCAGAAATTTTCGAGTTTCGGCCAGATAGCTGAAGTTAAACTAATCAAGGATGAATCCTCAAGAAGATCCAAGGGGTTTGCATTTATTCAATATACCAGTCAAGATGATGCTATGCTCGCCCTGGAAAATATGGATCGCAAGAATCTTGACGGCAGGATCATCTACGTAGAGCTTGCTAGACCCGGGAAAGACGCTTATGGAGAATACCCAAGAACCTCTGGTCCCCCAAAGAAGCAGAATTTGCCACAGCAAGAGGAAGTTTCGGACTGCTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

153

Amino Acids

17.4

Weight (kDa)

9.0

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 45 - 114 4.1e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 240, 321, 344
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 185, 418
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 67, 455
AgsI TTSAA 2 cut(s) 85, 269
AjnI CCWGG 1 cut(s) 300
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 4 cut(s) 88, 101, 209, 352
AluI AGCT 4 cut(s) 88, 101, 209, 352
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 3 cut(s) 240, 321, 344
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 185, 418
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 2 cut(s) 363, 364
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 363, 364
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 357
BisI GCNGC 2 cut(s) 9, 179
BlsI GCNGC 2 cut(s) 10, 180
Bme1390I CCNGG 3 cut(s) 302, 363, 364
Bme18I GGWCC 1 cut(s) 401
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 3 cut(s) 302, 363, 364
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 363, 364
BsaAI YACGTR 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 249, 300, 362
Bse1I ACTGG 2 cut(s) 162, 276
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 249, 300, 362
BseGI GGATG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 162, 276
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 1 cut(s) 363
BsiWI CGTACG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 3 cut(s) 245, 313, 336
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 3 cut(s) 240, 321, 344
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 162, 276
BssECI CCNNGG 3 cut(s) 249, 300, 362
BssMI GATC 3 cut(s) 245, 313, 336
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 127, 297, 354
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 248, 316, 339
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 245, 313, 336
BstMWI GCNNNNNNNGC 3 cut(s) 85, 296, 421
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 300, 361, 362
BstSNI TACGTA 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 127, 297, 354
Cfr13I GGNCC 1 cut(s) 401
Cfr9I CCCGGG 1 cut(s) 362
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 66, 454
CviJI RGCY 6 cut(s) 79, 88, 101, 201, 209, 352
CviKI_1 RGCY 6 cut(s) 79, 88, 101, 201, 209, 352
CviQI GTAC 2 cut(s) 66, 454
DpnI GATC 3 cut(s) 247, 315, 338
DpnII GATC 3 cut(s) 245, 313, 336
EaeI YGGCCR 1 cut(s) 199
Eco105I TACGTA 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 7 cut(s) 37, 149, 154, 273, 293, 311, 378
FaqI GGGAC 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 9, 179
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 9, 179
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 9, 179
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 363
HgaI GACGC 1 cut(s) 380
HinfI GANTC 5 cut(s) 49, 61, 71, 233, 322
HpaII CCGG 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 3 cut(s) 240, 281, 326
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 178, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 296, 421
HpySE526I ACGT 1 cut(s) 345
Kzo9I GATC 3 cut(s) 245, 313, 336
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 9 cut(s) 175, 215, 287, 289, 314, 319, 376, 384, 436
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 247, 315, 338
MboI GATC 3 cut(s) 245, 313, 336
MboII GAAGA 1 cut(s) 255
MflI RGATCY 1 cut(s) 245
MluCI AATT 2 cut(s) 185, 418
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 4 cut(s) 129, 247, 406, 427
MseI TTAA 2 cut(s) 141, 216
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 3 cut(s) 302, 363, 364
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 85, 296, 421
NciI CCSGG 2 cut(s) 363, 364
NdeII GATC 3 cut(s) 245, 313, 336
NlaIV GGNNCC 1 cut(s) 403
PfeI GAWTC 4 cut(s) 49, 61, 233, 322
Pfl23II CGTACG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 10, 180
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspLI CGTACG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 67, 455
RsaNI GTAC 2 cut(s) 66, 454
SaqAI TTAA 2 cut(s) 141, 216
SatI GCNGC 2 cut(s) 9, 179
Sau3AI GATC 3 cut(s) 245, 313, 336
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 302, 363, 364
SetI ASST 6 cut(s) 90, 103, 211, 348, 354, 398
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 401
SmaI CCCGGG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SnaBI TACGTA 1 cut(s) 346
Sse9I AATT 2 cut(s) 185, 418
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 300, 361, 362
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 59, 111, 191
TasI AATT 2 cut(s) 185, 418
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 4 cut(s) 49, 61, 233, 322
Tru1I TTAA 2 cut(s) 141, 216
Tru9I TTAA 2 cut(s) 141, 216
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 41, 246
TspGWI ACGGA 1 cut(s) 83
TspMI CCCGGG 1 cut(s) 362
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 185, 418
XmaI CCCGGG 1 cut(s) 362
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.