Prupe.4G116100_v2.0.a1

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015504
Physical Location & Seq
Forward (+)
6279680 .. 6281971
2292 bp
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UTR
Exon/CDS
Intron
Prupe.4G116100.1

Sequence Viewer

Length: 474 bp
ATGTGGGCGGCAGGAATCTCTCTCTCTTCCCCATTTTACGCATACCCGAAACCCATTAACAGTCTCCGTAGCTCTGTTTCAAACCGTACGGGCTCCAAGTCTTTGAAGCTCAGAGCTTCCTTCTTCGACTATCCACTGGCAAGCAAAATATTGGTGAAAAATATACCGTATTCCACCAGTGAGAATAGTTTGCAGGAGAAATTTTCGAATTTCGGCCAGATAGCTGAAGTTAAACTAGTCAAGGATGAAACCTCAAGGAGGTCCAAGGGGTATGCGTATATTCAATATACCAGTCAAGATGATGCTATGCTTGCCCTGGAAAATATGGATCACCAGAATCTCGATGGCAGGATTATCTACGTTGAGGTTGCAAGACCTGGGAAAGATGCTTATGGAGAATACCCGAAAACCTCTGGTCCCCCAAAGAAGCTGAACTTGCAGCAGCAAGAGGAAGTTTCGGACTGCTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

8.85

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 2 cut(s) 200, 208
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 88, 470
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 3 cut(s) 81, 106, 284
AhlI ACTAGT 1 cut(s) 235
AjnI CCWGG 2 cut(s) 315, 376
AluBI AGCT 5 cut(s) 72, 109, 116, 224, 430
AluI AGCT 5 cut(s) 72, 109, 116, 224, 430
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 439, 442
ApoI RAATTY 2 cut(s) 200, 208
AspS9I GGNCC 2 cut(s) 261, 416
AsuHPI GGTGA 2 cut(s) 166, 323
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 261, 416
BanII GRGCYC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 451, 454
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 317, 378
BcoDI GTCTC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 235
BfaI CTAG 1 cut(s) 236
BisI GCNGC 3 cut(s) 9, 440, 443
BlsI GCNGC 3 cut(s) 10, 441, 444
Bme1390I CCNGG 2 cut(s) 317, 378
Bme18I GGWCC 2 cut(s) 261, 416
BmgT120I GGNCC 2 cut(s) 261, 416
BmiI GGNNCC 2 cut(s) 94, 418
BmrFI CCNGG 2 cut(s) 317, 378
BmsI GCATC 2 cut(s) 292, 376
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 264, 315, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 141, 177, 291
BseBI CCWGG 2 cut(s) 317, 378
BseDI CCNNGG 3 cut(s) 264, 315, 377
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 3 cut(s) 141, 177, 291
BseXI GCAGC 2 cut(s) 451, 454
BshFI GGCC 1 cut(s) 216
BsiWI CGTACG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 94, 418
BspPI GGATC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 206
BsrI ACTGG 3 cut(s) 141, 177, 291
BssECI CCNNGG 3 cut(s) 264, 315, 377
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 317, 378
Bst4CI ACNGT 3 cut(s) 62, 86, 168
Bst6I CTCTTC 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 142, 312
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 311, 436
BstNI CCWGG 2 cut(s) 317, 378
BstSCI CCNGG 2 cut(s) 315, 376
BstV1I GCAGC 2 cut(s) 451, 454
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 134, 184
Cac8I GCNNGC 2 cut(s) 142, 312
Cfr13I GGNCC 2 cut(s) 261, 416
Csp6I GTAC 2 cut(s) 87, 469
CviJI RGCY 7 cut(s) 72, 93, 109, 116, 216, 224, 430
CviKI_1 RGCY 7 cut(s) 72, 93, 109, 116, 216, 224, 430
CviQI GTAC 2 cut(s) 87, 469
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 261, 416
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 315, 376
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 264
FaiI YATR 8 cut(s) 43, 164, 273, 279, 288, 308, 326, 393
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 9, 440, 443
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 9, 440, 443
FspBI CTAG 1 cut(s) 236
GluI GCNGC 3 cut(s) 9, 440, 443
HaeIII GGCC 1 cut(s) 216
HinfI GANTC 2 cut(s) 15, 337
HphI GGTGA 2 cut(s) 166, 323
Hpy188I TCNGA 2 cut(s) 113, 460
Hpy188III TCNNGA 2 cut(s) 296, 341
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 62, 86, 168
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 193, 371, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 436
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 360
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 2 cut(s) 451, 454
LweI GCATC 2 cut(s) 292, 376
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 360
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 18, 115
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 200, 208
MnlI CCTC 5 cut(s) 252, 262, 358, 421, 442
MseI TTAA 2 cut(s) 57, 231
MspR9I CCNGG 2 cut(s) 317, 378
MvaI CCWGG 2 cut(s) 317, 378
MwoI GCNNNNNNNGC 2 cut(s) 311, 436
NdeII GATC 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 94, 418
NspV TTCGAA 1 cut(s) 206
PfeI GAWTC 2 cut(s) 15, 337
Pfl23II CGTACG 1 cut(s) 86
PkrI GCNGC 3 cut(s) 10, 441, 444
Psp6I CCWGG 2 cut(s) 315, 376
PspGI CCWGG 2 cut(s) 315, 376
PspLI CGTACG 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 94, 418
PspPI GGNCC 2 cut(s) 261, 416
RsaI GTAC 2 cut(s) 88, 470
RsaNI GTAC 2 cut(s) 87, 469
SaqAI TTAA 2 cut(s) 57, 231
SatI GCNGC 3 cut(s) 9, 440, 443
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 261, 416
ScrFI CCNGG 2 cut(s) 317, 378
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 2 cut(s) 292, 376
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 2 cut(s) 261, 416
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 235
Sse9I AATT 2 cut(s) 200, 208
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 315, 376
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 62, 86, 168
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 126, 206, 342
TasI AATT 2 cut(s) 200, 208
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 15, 337
Tru1I TTAA 2 cut(s) 57, 231
Tru9I TTAA 2 cut(s) 57, 231
TscAI CASTG 2 cut(s) 141, 184
TseI GCWGC 2 cut(s) 439, 442
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 2 cut(s) 141, 184
VpaK11BI GGWCC 2 cut(s) 261, 416
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 2 cut(s) 200, 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.