Rh5BG152100

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015504
Physical Location & Seq
Forward (+)
15551008 .. 15553850
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG152100.1

Sequence Viewer

Length: 417 bp
ATGTGGGCAGCTCCAGTCCCTTTTCCATCGTACAACAATGGAAAACCCATTAACACTCTTCAAGCTTCTGGGTCAAACCGTAGGGTGCCCAAGTCTTTGAAGCTCAGAGCTTCCTTCTACGACTATCCTCTCGCAAGCAGAATCATGGTCAAAAATATACCATATTCCACCAGTGAAAATAGTTTGCAGCAGAAGTTTTCAAATTTCGGAGAGATAGCTGAAGTTAAACTAGTGAAGGATGAAACTTCAAAGAGGTCTAAGGGGTTTGCATTTATTCAGTATACCAGCCAAGATGATGCAATGCTTGCCCTGGAAAACATGGACCACCAGGTTCGACCTTGCCATTTTGTCCTGCTACATTTTTCCTTGGGAAGTATTACCCTTGTATCTCATTTGCTTTGTACATCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

138

Amino Acids

15.58

Weight (kDa)

9.17

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 110 7.1e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 32, 403
AgsI TTSAA 4 cut(s) 62, 100, 201, 249
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 2 cut(s) 309, 327
AluBI AGCT 5 cut(s) 11, 65, 103, 110, 218
AluI AGCT 5 cut(s) 11, 65, 103, 110, 218
ApeKI GCWGC 2 cut(s) 8, 187
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 90
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 20, 199
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 311, 329
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 9, 188
BlsI GCNGC 2 cut(s) 10, 189
Bme1390I CCNGG 2 cut(s) 311, 329
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 311, 329
BmsI GCATC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 309, 366
Bse1I ACTGG 2 cut(s) 14, 171
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 311, 329
BseDI CCNNGG 2 cut(s) 309, 366
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 14, 171
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 2 cut(s) 20, 199
BshNI GGYRCC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 2 cut(s) 14, 171
BssECI CCNNGG 2 cut(s) 309, 366
BssNAI GTATAC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 311, 329
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 136, 306
BstDEI CTNAG 2 cut(s) 104, 258
BstF5I GGATG 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 311, 329
BstSCI CCNGG 2 cut(s) 309, 327
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 20, 199
BstZ17I GTATAC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 136, 306
Cfr13I GGNCC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 2 cut(s) 31, 402
CviAII CATG 2 cut(s) 145, 319
CviJI RGCY 6 cut(s) 11, 65, 103, 110, 218, 288
CviKI_1 RGCY 6 cut(s) 11, 65, 103, 110, 218, 288
CviQI GTAC 2 cut(s) 31, 402
DdeI CTNAG 2 cut(s) 104, 258
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 309, 327
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 148, 322
FaiI YATR 5 cut(s) 146, 158, 163, 282, 320
FaqI GGGAC 1 cut(s) 2
FatI CATG 2 cut(s) 144, 318
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 9, 188
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 9, 188
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 9, 188
Hin1II CATG 2 cut(s) 148, 322
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 3 cut(s) 107, 209, 409
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 2 cut(s) 124, 229
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 187, 269, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 104, 258
Hsp92II CATG 2 cut(s) 148, 322
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 9 cut(s) 27, 54, 184, 296, 298, 314, 323, 341, 365
Lsp1109I GCAGC 2 cut(s) 20, 199
LweI GCATC 1 cut(s) 286
MabI ACCWGGT 1 cut(s) 327
MaeI CTAG 1 cut(s) 230
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 202
MnlI CCTC 2 cut(s) 138, 246
MseI TTAA 2 cut(s) 51, 225
MspR9I CCNGG 2 cut(s) 311, 329
MvaI CCWGG 2 cut(s) 311, 329
MwoI GCNNNNNNNGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 148, 322
NlaIV GGNNCC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 10, 189
Psp6I CCWGG 2 cut(s) 309, 327
PspGI CCWGG 2 cut(s) 309, 327
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 322
RsaI GTAC 2 cut(s) 32, 403
RsaNI GTAC 2 cut(s) 31, 402
SaqAI TTAA 2 cut(s) 51, 225
SatI GCNGC 2 cut(s) 9, 188
Sau96I GGNCC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 311, 329
SduI GDGCHC 1 cut(s) 90
SetI ASST 8 cut(s) 13, 67, 105, 112, 220, 257, 333, 340
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 322
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 309, 327
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 51, 225
Tru9I TTAA 2 cut(s) 51, 225
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 8, 187
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.