FvH4_3g12920

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018397
Physical Location & Seq
Forward (+)
7721932 .. 7722727
796 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12920.t1

Sequence Viewer

Length: 678 bp
ATGTCACCCTTGTCGTCCTCGATGAGGCTAACTCAGTTGTTGAAAAGACTTGTGAGTTTTCATGCTCTGCCTCCCCCACCTACTCAGTTTCCGGTGACAGCAAAAGTTGTGGGAATCATCTGCGATGCTCCATATTATAACTACTCTAACAAGGAAGATGATGGGAAGAGGATCATCCAGGTTAATGCAGACTACAAGTTCAAAGTTGTTAGACTTCTTCGCTCTTATGATCATCCAACAAACTTTTTTCTCGAGATGAAGGTGGAGATCTTATCTTCCGAGACTGGTGAATGGAGCGAGACGGTTGTAAGTTCCCCTGAATCTTGGTATCATATCTATAGCAGTATTGCTCACAATGGATTGTTGTATCACTTGTGTCAACTAACTCATTCTAGGACCTGTCTTGCTGGGTTGGATCCTTTCATGATAATGAACACAATCACGAACAGTACTACTAGCAATGGTCTTGATTGTTATAAATGTTGTCACGTAGAAATGGATACAACTGTGGTAGACGGCTTCAGTGGAGATCAGTGTGTTGTCAGTGAACGGTCTCTGCGGATTTCCTACTTTGACTGGGATTCATTTAGTGTATATGTTTGGGACTTGAAAGAAGAAGAAGGTCATGCTGAGATGGACGTAGGAAAACTGTGCTATAAACACGGGTTTATTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

226

Amino Acids

25.7

Weight (kDa)

5.64

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 66 - 130 1.2e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 138, 477
AccI GTMKAC 1 cut(s) 513
AciI CCGC 1 cut(s) 559
AclWI GGATC 3 cut(s) 179, 410, 423
AcuI CTGAAG 1 cut(s) 505
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 43, 202, 610
AjnI CCWGG 1 cut(s) 177
Alw26I GTCTC 3 cut(s) 275, 293, 558
AlwI GGATC 3 cut(s) 179, 410, 423
Ama87I CYCGRG 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 106, 299
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BamHI GGATCC 1 cut(s) 415
BccI CCATC 2 cut(s) 155, 628
BceAI ACGGC 1 cut(s) 532
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 493
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 275, 293, 558
BfaI CTAG 2 cut(s) 393, 456
BfmI CTRYAG 1 cut(s) 337
BfuI GTATCC 1 cut(s) 493
BglII AGATCT 1 cut(s) 267
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BsaAI YACGTR 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 289, 581
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 174, 232
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 3 cut(s) 47, 98, 621
BseNI ACTGG 2 cut(s) 289, 581
BseYI CCCAGC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 3 cut(s) 275, 293, 558
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 617
Bso31I GGTCTC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 5 cut(s) 171, 229, 267, 415, 529
BspACI CCGC 1 cut(s) 559
BspCNI CTCAG 3 cut(s) 46, 97, 622
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 3 cut(s) 179, 410, 423
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 466
BsrI ACTGG 2 cut(s) 289, 581
BssMI GATC 5 cut(s) 171, 229, 267, 415, 529
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 5 cut(s) 304, 449, 508, 552, 651
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 490
BstDEI CTNAG 3 cut(s) 33, 84, 630
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 174, 232
BstKTI GATC 5 cut(s) 174, 232, 270, 418, 532
BstMAI GTCTC 3 cut(s) 275, 293, 558
BstMBI GATC 5 cut(s) 171, 229, 267, 415, 529
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 337
BstX2I RGATCY 2 cut(s) 267, 415
BstYI RGATCY 2 cut(s) 267, 415
BsuI GTATCC 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 174, 232
BtsIMutI CAGTG 3 cut(s) 529, 539, 550
CciI TCATGA 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 450
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 3 cut(s) 62, 424, 626
CviJI RGCY 2 cut(s) 28, 519
CviKI_1 RGCY 2 cut(s) 28, 519
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 33, 84, 630
DpnI GATC 5 cut(s) 173, 231, 269, 417, 531
DpnII GATC 5 cut(s) 171, 229, 267, 415, 529
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 3 cut(s) 65, 427, 629
FaqI GGGAC 1 cut(s) 617
FatI CATG 3 cut(s) 61, 423, 625
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 513
FokI GGATG 2 cut(s) 161, 219
FspBI CTAG 2 cut(s) 393, 456
GsaI CCCAGC 1 cut(s) 411
HapII CCGG 1 cut(s) 92
Hin1II CATG 3 cut(s) 65, 427, 629
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 3 cut(s) 114, 320, 581
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 106, 299
Hpy166II GTNNAC 3 cut(s) 380, 514, 548
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 5 cut(s) 251, 253, 424, 442, 467
Hpy8I GTNNAC 3 cut(s) 380, 514, 548
HpyAV CCTTC 2 cut(s) 253, 614
HpyCH4III ACNGT 5 cut(s) 304, 449, 508, 552, 651
HpyCH4IV ACGT 2 cut(s) 489, 639
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 3 cut(s) 33, 84, 630
HpySE526I ACGT 2 cut(s) 489, 639
Hsp92II CATG 3 cut(s) 65, 427, 629
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 5 cut(s) 171, 229, 267, 415, 529
LmnI GCTCC 2 cut(s) 133, 294
LpnPI CCDG 8 cut(s) 105, 164, 191, 270, 330, 393, 412, 562
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 393, 456
MaeII ACGT 2 cut(s) 489, 639
MaeIII GTNAC 3 cut(s) 3, 94, 485
MalI GATC 5 cut(s) 173, 231, 269, 417, 531
MboI GATC 5 cut(s) 171, 229, 267, 415, 529
MboII GAAGA 6 cut(s) 167, 178, 209, 267, 626, 629
MflI RGATCY 2 cut(s) 267, 415
MmeI TCCRAC 2 cut(s) 260, 393
MnlI CCTC 4 cut(s) 18, 28, 81, 162
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
NdeII GATC 5 cut(s) 171, 229, 267, 415, 529
NlaIII CATG 3 cut(s) 65, 427, 629
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 3 cut(s) 3, 94, 485
PaeR7I CTCGAG 1 cut(s) 251
PagI TCATGA 1 cut(s) 423
PfeI GAWTC 3 cut(s) 114, 320, 581
Ppu21I YACGTR 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 396
PsiI TTATAA 2 cut(s) 138, 477
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 396
PspPPI RGGWCCY 1 cut(s) 396
PsuI RGATCY 2 cut(s) 267, 415
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 5 cut(s) 171, 229, 267, 415, 529
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 179
SetI ASST 7 cut(s) 82, 183, 264, 401, 492, 625, 642
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SsiI CCGC 1 cut(s) 559
SspMI CTAG 2 cut(s) 393, 456
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 5 cut(s) 304, 449, 508, 552, 651
TaiI ACGT 2 cut(s) 492, 642
TaqI TCGA 2 cut(s) 20, 252
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 3 cut(s) 114, 320, 581
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 3 cut(s) 529, 539, 550
TseFI GTSAC 3 cut(s) 3, 94, 485
Tsp45I GTSAC 3 cut(s) 3, 94, 485
TspDTI ATGAA 6 cut(s) 50, 272, 412, 446, 573, 662
TspRI CASTG 3 cut(s) 529, 539, 550
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 2 cut(s) 393, 456
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.