Rmu_ssc0000244.1_g000015

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000244.1
OG0018397
Physical Location & Seq
Forward (+)
88810 .. 89916
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000244.1_g000015.1.cds

Sequence Viewer

Length: 1107 bp
atggccactctgataaacattagaggggaggaattacatgacagaatgtcgtccttgtcatcctcgacgcggctaactcagttgttgaaaagacttgtgagtttccagggtttcaaagtagagccaattgttgtagccacttacaatgacttggttctgtgctgtgcacctcttaataatcaaactaattactacatctgcaatccgtacaccatgcaatgggtggctctgcctcccccacctactcagtttccggttacagcaaaagtagtgggaatcatctgtgatactccgtattataactactataaggaagatgaagggaagaggcagatcatacagcttaatgcggactacaagtgcaaagttatcagacttcttagctcttatgagtatcctaagaactacaggtgcaaggtggagatcttctcttccgagaccggtgaatggagcaagacagttataatttcccctaaaccttggtatcatatctatagcagtattgctcacaatggagtgttgtatcacttgtgtcaatcaactgattctaggacctgtcttgctgggttggatcctttcatgataatgaacaaaatcacgaacagtactcctggcaatggtgttgatcattataaatgttgttatgtagaaatggatacaattgtggtaggcggcttcagtggagattattgtgttgtcagtgaacggtctctgcggatttcctactctgactgggatacattcagtgtatatgtttgggacttaaaagaagaagaagaaggtcatgctgaggtggtcatagaaggaactggaaaactgtgttggaaacacacgggggtatattcactagaccgagatatagctccagatgaatcatcagtatcagtgtttgagctgatagctatcgatccaaataatgatgatatattgtatctaaatattaatggagaccttgtgatgagcaatattcaaacaagaaagtggtcagtgctagttaaagagagtcaaatcatcgattctcacttcttccagttgcagcttccattgtggccaacaccaattcctaaactaccgcagcatgccaaagttggaggaactagcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

41.84

Weight (kDa)

5.51

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 300, 464, 633
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 70
AciI CCGC 5 cut(s) 70, 350, 672, 715, 1073
AclWI GGATC 3 cut(s) 566, 579, 902
AcoI YGGCCR 2 cut(s) 3, 1049
AcuI CTGAAG 1 cut(s) 661
AfaI GTAC 2 cut(s) 209, 607
AfiI CCNNNNNNNGG 4 cut(s) 69, 219, 447, 617
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 3 cut(s) 88, 115, 971
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 105, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AluBI AGCT 7 cut(s) 343, 384, 863, 895, 902, 1039, 1104
AluI AGCT 7 cut(s) 343, 384, 863, 895, 902, 1039, 1104
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 3 cut(s) 431, 714, 942
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 3 cut(s) 566, 579, 902
AoxI GGCC 2 cut(s) 3, 1049
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 1036, 1075, 1101
AseI ATTAAT 1 cut(s) 942
AsiGI ACCGGT 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 169
BaeI ACNNNNGTAYC 4 cut(s) 467, 500, 648, 681
BalI TGGCCA 2 cut(s) 5, 1051
BamHI GGATCC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 2 cut(s) 1048, 1087
BciT130I CCWGG 2 cut(s) 107, 612
BciVI GTATCC 3 cut(s) 405, 649, 730
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 431, 714, 942
BfaI CTAG 5 cut(s) 549, 848, 992, 1098, 1105
BfmI CTRYAG 2 cut(s) 406, 493
BfuI GTATCC 3 cut(s) 405, 649, 730
BglII AGATCT 1 cut(s) 423
BisI GCNGC 5 cut(s) 71, 673, 1037, 1076, 1102
BlsI GCNGC 5 cut(s) 72, 674, 1038, 1077, 1103
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 2 cut(s) 107, 612
Bme18I GGWCC 1 cut(s) 552
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 2 cut(s) 107, 612
BmrI ACTGGG 1 cut(s) 742
BmuI ACTGGG 1 cut(s) 742
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 789
Bsa29I ATCGAT 2 cut(s) 906, 1014
BsaBI GATNNNNATC 1 cut(s) 902
BsaI GGTCTC 3 cut(s) 431, 714, 942
BsaJI CCNNGG 2 cut(s) 106, 479
BsaWI WCCGGW 2 cut(s) 253, 440
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 219, 447, 617
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 737, 814, 1030
Bse3DI GCAATG 2 cut(s) 224, 622
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 2 cut(s) 107, 612
BseCI ATCGAT 2 cut(s) 906, 1014
BseDI CCNNGG 2 cut(s) 106, 479
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 4 cut(s) 69, 219, 447, 617
BseMI GCAATG 2 cut(s) 224, 622
BseMII CTCAG 3 cut(s) 92, 260, 780
BseNI ACTGG 3 cut(s) 737, 814, 1030
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 1048, 1087
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 5, 1051
BshTI ACCGGT 1 cut(s) 440
BshVI ATCGAT 2 cut(s) 906, 1014
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 254, 441
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 4 cut(s) 69, 219, 447, 617
BsmAI GTCTC 3 cut(s) 431, 714, 942
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 2 cut(s) 5, 1051
Bso31I GGTCTC 3 cut(s) 431, 714, 942
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 5 cut(s) 333, 423, 571, 625, 907
BspACI CCGC 5 cut(s) 70, 350, 672, 715, 1073
BspANI GGCC 2 cut(s) 5, 1051
BspCNI CTCAG 3 cut(s) 91, 259, 781
BspDI ATCGAT 2 cut(s) 906, 1014
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 573
BspPI GGATC 3 cut(s) 566, 579, 902
BspTNI GGTCTC 3 cut(s) 431, 714, 942
BsrDI GCAATG 2 cut(s) 224, 622
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 3 cut(s) 737, 814, 1030
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 106, 479
BssMI GATC 5 cut(s) 333, 423, 571, 625, 907
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 107, 612
Bst4CI ACNGT 4 cut(s) 460, 605, 708, 819
Bst6I CTCTTC 2 cut(s) 320, 436
BstC8I GCNNGC 1 cut(s) 1080
BstDEI CTNAG 5 cut(s) 78, 246, 380, 399, 789
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 5 cut(s) 336, 426, 574, 628, 910
BstMAI GTCTC 3 cut(s) 431, 714, 942
BstMBI GATC 5 cut(s) 333, 423, 571, 625, 907
BstNI CCWGG 2 cut(s) 107, 612
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 2 cut(s) 105, 610
BstSFI CTRYAG 2 cut(s) 406, 493
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 1048, 1087
BstX2I RGATCY 2 cut(s) 423, 571
BstYI RGATCY 2 cut(s) 423, 571
Bsu15I ATCGAT 2 cut(s) 906, 1014
BsuI GTATCC 3 cut(s) 405, 649, 730
BsuRI GGCC 2 cut(s) 5, 1051
BsuTUI ATCGAT 2 cut(s) 906, 1014
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 5 cut(s) 685, 706, 751, 891, 993
Cac8I GCNNGC 1 cut(s) 1080
CciI TCATGA 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 552
ClaI ATCGAT 2 cut(s) 906, 1014
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 208, 606
CspAI ACCGGT 1 cut(s) 440
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 5 cut(s) 38, 214, 580, 785, 1079
CviQI GTAC 2 cut(s) 208, 606
DdeI CTNAG 5 cut(s) 78, 246, 380, 399, 789
DpnI GATC 5 cut(s) 335, 425, 573, 627, 909
DpnII GATC 5 cut(s) 333, 423, 571, 625, 907
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 3, 1049
Eam1104I CTCTTC 2 cut(s) 320, 436
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 2 cut(s) 320, 436
Eco130I CCWWGG 1 cut(s) 479
Eco31I GGTCTC 3 cut(s) 431, 714, 942
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 552
EcoRII CCWGG 2 cut(s) 105, 610
EcoT14I CCWWGG 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 5 cut(s) 41, 217, 583, 788, 1082
FaqI GGGAC 1 cut(s) 773
FatI CATG 5 cut(s) 37, 213, 579, 784, 1078
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 5 cut(s) 71, 673, 1037, 1076, 1102
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 5 cut(s) 71, 673, 1037, 1076, 1102
FspBI CTAG 5 cut(s) 549, 848, 992, 1098, 1105
GluI GCNGC 5 cut(s) 71, 673, 1037, 1076, 1102
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 2 cut(s) 5, 1051
HapII CCGG 2 cut(s) 254, 441
HgaI GACGC 1 cut(s) 76
Hin1II CATG 5 cut(s) 41, 217, 583, 788, 1082
HinfI GANTC 5 cut(s) 276, 545, 872, 1003, 1016
HpaII CCGG 2 cut(s) 254, 441
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 3 cut(s) 167, 210, 704
Hpy188I TCNGA 4 cut(s) 12, 374, 436, 730
Hpy188III TCNNGA 3 cut(s) 580, 598, 866
Hpy8I GTNNAC 3 cut(s) 167, 210, 704
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 314, 773, 797
HpyCH4III ACNGT 4 cut(s) 460, 605, 708, 819
HpyCH4V TGCA 6 cut(s) 167, 201, 217, 363, 414, 1036
HpyF3I CTNAG 5 cut(s) 78, 246, 380, 399, 789
Hsp92II CATG 5 cut(s) 41, 217, 583, 788, 1082
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 333, 423, 571, 625, 907
LmnI GCTCC 2 cut(s) 450, 868
Lsp1109I GCAGC 2 cut(s) 1048, 1087
MaeI CTAG 5 cut(s) 549, 848, 992, 1098, 1105
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 335, 425, 573, 627, 909
MboI GATC 5 cut(s) 333, 423, 571, 625, 907
MboII GAAGA 8 cut(s) 326, 337, 418, 423, 782, 785, 788, 1018
MfeI CAATTG 2 cut(s) 126, 660
MflI RGATCY 2 cut(s) 423, 571
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 2 cut(s) 5, 1051
MluCI AATT 6 cut(s) 32, 126, 187, 465, 660, 1059
MluNI TGGCCA 2 cut(s) 5, 1051
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 3 cut(s) 549, 803, 1069
MnlI CCTC 8 cut(s) 17, 22, 73, 180, 243, 321, 784, 1085
Mox20I TGGCCA 2 cut(s) 5, 1051
MscI TGGCCA 2 cut(s) 5, 1051
MseI TTAA 5 cut(s) 174, 345, 764, 942, 996
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 2 cut(s) 5, 1051
MspI CCGG 2 cut(s) 254, 441
MspR9I CCNGG 2 cut(s) 107, 612
MunI CAATTG 2 cut(s) 126, 660
MvaI CCWGG 2 cut(s) 107, 612
MvnI CGCG 1 cut(s) 70
NdeII GATC 5 cut(s) 333, 423, 571, 625, 907
NlaIII CATG 5 cut(s) 41, 217, 583, 788, 1082
NlaIV GGNNCC 1 cut(s) 573
NspI RCATGY 1 cut(s) 1082
PaeI GCATGC 1 cut(s) 1082
PagI TCATGA 1 cut(s) 579
PfeI GAWTC 4 cut(s) 276, 545, 872, 1016
PflMI CCANNNNNTGG 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 5 cut(s) 72, 674, 1038, 1077, 1103
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
PpuMI RGGWCCY 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 942
PsiI TTATAA 3 cut(s) 300, 464, 633
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 105, 610
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 2 cut(s) 105, 610
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 1 cut(s) 552
PspPPI RGGWCCY 1 cut(s) 552
PsuI RGATCY 2 cut(s) 423, 571
RsaI GTAC 2 cut(s) 209, 607
RsaNI GTAC 2 cut(s) 208, 606
RseI CAYNNNNRTG 1 cut(s) 584
SaqAI TTAA 5 cut(s) 174, 345, 764, 942, 996
SatI GCNGC 5 cut(s) 71, 673, 1037, 1076, 1102
Sau3AI GATC 5 cut(s) 333, 423, 571, 625, 907
Sau96I GGNCC 1 cut(s) 552
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 2 cut(s) 107, 612
SduI GDGCHC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 406, 493
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 584
SphI GCATGC 1 cut(s) 1082
Sse9I AATT 6 cut(s) 32, 126, 187, 465, 660, 1059
SsiI CCGC 5 cut(s) 70, 350, 672, 715, 1073
SspI AATATT 2 cut(s) 940, 967
SspMI CTAG 5 cut(s) 549, 848, 992, 1098, 1105
StyD4I CCNGG 2 cut(s) 105, 610
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 4 cut(s) 460, 605, 708, 819
TaqI TCGA 3 cut(s) 65, 906, 1014
TaqII GACCGA 1 cut(s) 867
TasI AATT 6 cut(s) 32, 126, 187, 465, 660, 1059
TatI WGTACW 1 cut(s) 605
TauI GCSGC 2 cut(s) 73, 675
TfiI GAWTC 4 cut(s) 276, 545, 872, 1016
Tru1I TTAA 5 cut(s) 174, 345, 764, 942, 996
Tru9I TTAA 5 cut(s) 174, 345, 764, 942, 996
TscAI CASTG 5 cut(s) 685, 706, 751, 891, 993
TseI GCWGC 3 cut(s) 1036, 1075, 1101
TspDTI ATGAA 4 cut(s) 333, 568, 602, 885
TspGWI ACGGA 2 cut(s) 195, 282
TspRI CASTG 5 cut(s) 685, 706, 751, 891, 993
Van91I CCANNNNNTGG 1 cut(s) 219
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 552
VspI ATTAAT 1 cut(s) 942
XceI RCATGY 1 cut(s) 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 5 cut(s) 549, 848, 992, 1098, 1105
ZrmI AGTACT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.