Rh5DG152500

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018397
Physical Location & Seq
Forward (+)
15512553 .. 15513008
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG152500.1

Sequence Viewer

Length: 456 bp
ATGGATACAATTGTGGTAGGCGGCTTCAGTAGAGATTACTGTGTTGTCAGTGAACGGTCTCTGCGGATTTCCTACTTTGACTGGGATACATTCAGTGTATATGTTTGGGACTTAAAAGAAGAAGAAGAAGGTCATGCTGAGGTGGTCATAGAAGGAACTGGAAAACTGTGTTGGAAACACACGGGGGTATATTCACTAGACCGAGATATAGCTCCAGATGAATCATCAGTATCAGTGTTTGAGCTGATAGCTATCGATCCAAATAATGATGATATATTGTATCTAAATATTAATGGAGACCTTGTGATGAGCAATATTCAAACAAGAAAGTGGTCAGTGCTAGTTAGAGAGAGTCAAATCATCGATTCTCACTTCTTCCAGTTGCAGCTTCCACTGTGGCCAACACCAATTCCTAAACTACCGCAGCATGCCAAAGTTGGAGGAACTAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

151

Amino Acids

17.18

Weight (kDa)

4.59

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 21, 64, 422
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 10
AgsI TTSAA 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 5 cut(s) 212, 244, 251, 388, 453
AluI AGCT 5 cut(s) 212, 244, 251, 388, 453
Alw26I GTCTC 2 cut(s) 63, 291
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 385, 424, 450
AseI ATTAAT 1 cut(s) 291
BaeI ACNNNNGTAYC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 400
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 397, 436
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 63, 291
BfaI CTAG 4 cut(s) 197, 341, 447, 454
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 4 cut(s) 22, 386, 425, 451
BlsI GCNGC 4 cut(s) 23, 387, 426, 452
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 138
Bsa29I ATCGAT 2 cut(s) 255, 363
BsaBI GATNNNNATC 1 cut(s) 251
BsaI GGTCTC 2 cut(s) 63, 291
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse1I ACTGG 3 cut(s) 86, 163, 379
Bse8I GATNNNNATC 1 cut(s) 251
BseCI ATCGAT 2 cut(s) 255, 363
BseJI GATNNNNATC 1 cut(s) 251
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 86, 163, 379
BseXI GCAGC 2 cut(s) 397, 436
BshFI GGCC 1 cut(s) 400
BshVI ATCGAT 2 cut(s) 255, 363
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 63, 291
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 400
Bso31I GGTCTC 2 cut(s) 63, 291
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 3 cut(s) 21, 64, 422
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 2 cut(s) 255, 363
BspPI GGATC 1 cut(s) 251
BspTNI GGTCTC 2 cut(s) 63, 291
BsrI ACTGG 3 cut(s) 86, 163, 379
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 4 cut(s) 41, 57, 168, 396
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 63, 291
BstMBI GATC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 397, 436
Bsu15I ATCGAT 2 cut(s) 255, 363
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 400
BsuTUI ATCGAT 2 cut(s) 255, 363
BtsIMutI CAGTG 5 cut(s) 55, 100, 240, 342, 392
Cac8I GCNNGC 1 cut(s) 429
ClaI ATCGAT 2 cut(s) 255, 363
CviAII CATG 2 cut(s) 134, 428
CviJI RGCY 7 cut(s) 24, 212, 244, 251, 388, 400, 453
CviKI_1 RGCY 7 cut(s) 24, 212, 244, 251, 388, 400, 453
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 398
Eco31I GGTCTC 2 cut(s) 63, 291
Eco57I CTGAAG 1 cut(s) 10
FaeI CATG 2 cut(s) 137, 431
FaiI YATR 8 cut(s) 100, 102, 135, 149, 190, 209, 275, 429
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 133, 427
Fnu4HI GCNGC 4 cut(s) 22, 386, 425, 451
Fsp4HI GCNGC 4 cut(s) 22, 386, 425, 451
FspBI CTAG 4 cut(s) 197, 341, 447, 454
GluI GCNGC 4 cut(s) 22, 386, 425, 451
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 400
Hin1II CATG 2 cut(s) 137, 431
HinfI GANTC 3 cut(s) 221, 352, 365
Hpy166II GTNNAC 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 122, 146
HpyCH4III ACNGT 4 cut(s) 41, 57, 168, 396
HpyCH4V TGCA 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 137, 431
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 67, 144, 228, 392
Lsp1109I GCAGC 2 cut(s) 397, 436
MaeI CTAG 4 cut(s) 197, 341, 447, 454
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 4 cut(s) 131, 134, 137, 367
MfeI CAATTG 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 2 cut(s) 9, 408
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 2 cut(s) 152, 418
MnlI CCTC 2 cut(s) 133, 434
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 2 cut(s) 113, 291
Msp20I TGGCCA 1 cut(s) 400
MunI CAATTG 1 cut(s) 9
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 137, 431
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 221, 365
PkrI GCNGC 4 cut(s) 23, 387, 426, 452
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PshBI ATTAAT 1 cut(s) 291
SaqAI TTAA 2 cut(s) 113, 291
SatI GCNGC 4 cut(s) 22, 386, 425, 451
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 1 cut(s) 361
SetI ASST 8 cut(s) 133, 144, 214, 246, 253, 303, 390, 455
SphI GCATGC 1 cut(s) 431
Sse9I AATT 2 cut(s) 9, 408
SsiI CCGC 3 cut(s) 21, 64, 422
SspI AATATT 2 cut(s) 289, 316
SspMI CTAG 4 cut(s) 197, 341, 447, 454
TaaI ACNGT 4 cut(s) 41, 57, 168, 396
TaqI TCGA 2 cut(s) 255, 363
TaqII GACCGA 1 cut(s) 216
TasI AATT 2 cut(s) 9, 408
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 2 cut(s) 221, 365
Tru1I TTAA 2 cut(s) 113, 291
Tru9I TTAA 2 cut(s) 113, 291
TscAI CASTG 5 cut(s) 55, 100, 240, 342, 399
TseI GCWGC 3 cut(s) 385, 424, 450
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 5 cut(s) 55, 100, 240, 342, 399
VspI ATTAAT 1 cut(s) 291
XceI RCATGY 1 cut(s) 431
XspI CTAG 4 cut(s) 197, 341, 447, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.