Rmu_ssc0000244.1_g000012

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000244.1
OG0018397
Physical Location & Seq
Forward (+)
79061 .. 79954
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000244.1_g000012.1.cds

Sequence Viewer

Length: 894 bp
atgcaatgggtggctctgcctcccccacctactcagtttccggttacagcaaaagtagtgggaatcatctgtgatactccatattataactactataaggaagacgaagggaagaggcagatcatacagcttaatgctgactacaagtgcaaagttatcagacttcttagctcttatgagtatcctaagaactacaggtgcaaggtggagatcttctcttccgagaccggtgaatggagcgagacagttataatttcccctaaaccttgttatcatatctatagcagtattgctcacaatggagtgttgtatcacttgtgtcaatcaactgattctaggacctgtcttgctgggttggatcctttcatgataatgaacaaaatcacgaacagtactcctggcaatggtgttgatcattataaatgttgttatgtagaaatggatacaattgtggtaggcggcttcagtagagattactgtgttgtcagtgaacggtctctgcggatttcctactctgactgggatacattcagtgtatatgtttgggacttaaaagaagaagaagaaggtcatgctgaggtggtcatagaaggaactggaaaactgtgttggaaacacacgggggtatattcactagaccgagatatagctccagatgaatcatcagtatcagtgtttgagctgatagctatcgatccaaataatgatgatatattgtatctaaatattaatggagaccttgtgatgagcaatattcaaacaagaaagtggtcagtgctagttagagagagtcaaatcatcgattctcacttcttccagttgcagcttccactgtggccaacaccaattcctaaactaccgcagcatgccaaagttggaggaactagcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

297

Amino Acids

33.83

Weight (kDa)

5.18

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 87, 251, 420
AciI CCGC 3 cut(s) 459, 502, 860
AclWI GGATC 3 cut(s) 353, 366, 689
AcoI YGGCCR 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 448
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 234, 404
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 1 cut(s) 758
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 7 cut(s) 130, 171, 650, 682, 689, 826, 891
AluI AGCT 7 cut(s) 130, 171, 650, 682, 689, 826, 891
Alw26I GTCTC 4 cut(s) 218, 236, 501, 729
AlwI GGATC 3 cut(s) 353, 366, 689
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 3 cut(s) 823, 862, 888
AseI ATTAAT 1 cut(s) 729
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 838
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 835, 874
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 3 cut(s) 192, 436, 517
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 218, 236, 501, 729
BfaI CTAG 5 cut(s) 336, 635, 779, 885, 892
BfmI CTRYAG 2 cut(s) 193, 280
BfuI GTATCC 3 cut(s) 192, 436, 517
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 460, 824, 863, 889
BlsI GCNGC 4 cut(s) 461, 825, 864, 890
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 576
Bsa29I ATCGAT 2 cut(s) 693, 801
BsaBI GATNNNNATC 1 cut(s) 689
BsaI GGTCTC 3 cut(s) 218, 501, 729
BsaWI WCCGGW 2 cut(s) 40, 227
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 404
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 524, 601, 817
Bse3DI GCAATG 2 cut(s) 11, 409
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 2 cut(s) 693, 801
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 2 cut(s) 234, 404
BseMI GCAATG 2 cut(s) 11, 409
BseMII CTCAG 2 cut(s) 47, 567
BseNI ACTGG 3 cut(s) 524, 601, 817
BseXI GCAGC 2 cut(s) 835, 874
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 227
BshVI ATCGAT 2 cut(s) 693, 801
BsiSI CCGG 2 cut(s) 41, 228
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 234, 404
BsmAI GTCTC 4 cut(s) 218, 236, 501, 729
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 1 cut(s) 838
Bso31I GGTCTC 3 cut(s) 218, 501, 729
Bsp143I GATC 5 cut(s) 120, 210, 358, 412, 694
BspACI CCGC 3 cut(s) 459, 502, 860
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 2 cut(s) 46, 568
BspDI ATCGAT 2 cut(s) 693, 801
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 3 cut(s) 353, 366, 689
BspTNI GGTCTC 3 cut(s) 218, 501, 729
BsrDI GCAATG 2 cut(s) 11, 409
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 3 cut(s) 524, 601, 817
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 5 cut(s) 120, 210, 358, 412, 694
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
Bst6I CTCTTC 2 cut(s) 107, 223
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 4 cut(s) 33, 167, 186, 576
BstKTI GATC 5 cut(s) 123, 213, 361, 415, 697
BstMAI GTCTC 4 cut(s) 218, 236, 501, 729
BstMBI GATC 5 cut(s) 120, 210, 358, 412, 694
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 193, 280
BstV1I GCAGC 2 cut(s) 835, 874
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 2 cut(s) 210, 358
BstYI RGATCY 2 cut(s) 210, 358
Bsu15I ATCGAT 2 cut(s) 693, 801
BsuI GTATCC 3 cut(s) 192, 436, 517
BsuRI GGCC 1 cut(s) 838
BsuTUI ATCGAT 2 cut(s) 693, 801
BtsIMutI CAGTG 5 cut(s) 493, 538, 678, 780, 830
Cac8I GCNNGC 1 cut(s) 867
CciI TCATGA 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 339
ClaI ATCGAT 2 cut(s) 693, 801
Csp6I GTAC 1 cut(s) 393
CspAI ACCGGT 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 3 cut(s) 367, 572, 866
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 4 cut(s) 33, 167, 186, 576
DpnI GATC 5 cut(s) 122, 212, 360, 414, 696
DpnII GATC 5 cut(s) 120, 210, 358, 412, 694
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 107, 223
EarI CTCTTC 2 cut(s) 107, 223
Eco31I GGTCTC 3 cut(s) 218, 501, 729
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 397
FaeI CATG 3 cut(s) 370, 575, 869
FaqI GGGAC 1 cut(s) 560
FatI CATG 3 cut(s) 366, 571, 865
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 460, 824, 863, 889
Fsp4HI GCNGC 4 cut(s) 460, 824, 863, 889
FspBI CTAG 5 cut(s) 336, 635, 779, 885, 892
GluI GCNGC 4 cut(s) 460, 824, 863, 889
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 1 cut(s) 838
HapII CCGG 2 cut(s) 41, 228
Hin1II CATG 3 cut(s) 370, 575, 869
HinfI GANTC 5 cut(s) 63, 332, 659, 790, 803
HpaII CCGG 2 cut(s) 41, 228
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 161, 223, 517
Hpy188III TCNNGA 3 cut(s) 367, 385, 653
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 101, 560, 584
HpyCH4III ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
HpyCH4V TGCA 4 cut(s) 4, 150, 201, 823
HpyF3I CTNAG 4 cut(s) 33, 167, 186, 576
Hsp92II CATG 3 cut(s) 370, 575, 869
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 120, 210, 358, 412, 694
LmnI GCTCC 2 cut(s) 237, 655
Lsp1109I GCAGC 2 cut(s) 835, 874
MaeI CTAG 5 cut(s) 336, 635, 779, 885, 892
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 122, 212, 360, 414, 696
MboI GATC 5 cut(s) 120, 210, 358, 412, 694
MboII GAAGA 8 cut(s) 113, 124, 205, 210, 569, 572, 575, 805
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 210, 358
MlsI TGGCCA 1 cut(s) 838
MluCI AATT 3 cut(s) 252, 447, 846
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 3 cut(s) 336, 590, 856
MnlI CCTC 4 cut(s) 30, 108, 571, 872
Mox20I TGGCCA 1 cut(s) 838
MscI TGGCCA 1 cut(s) 838
MseI TTAA 3 cut(s) 132, 551, 729
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 838
MspI CCGG 2 cut(s) 41, 228
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 399
NdeII GATC 5 cut(s) 120, 210, 358, 412, 694
NlaIII CATG 3 cut(s) 370, 575, 869
NlaIV GGNNCC 1 cut(s) 360
NspI RCATGY 1 cut(s) 869
PaeI GCATGC 1 cut(s) 869
PagI TCATGA 1 cut(s) 366
PfeI GAWTC 4 cut(s) 63, 332, 659, 803
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 4 cut(s) 461, 825, 864, 890
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
PpuMI RGGWCCY 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 3 cut(s) 87, 251, 420
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 339
PspPPI RGGWCCY 1 cut(s) 339
PsuI RGATCY 2 cut(s) 210, 358
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 3 cut(s) 132, 551, 729
SatI GCNGC 4 cut(s) 460, 824, 863, 889
Sau3AI GATC 5 cut(s) 120, 210, 358, 412, 694
Sau96I GGNCC 1 cut(s) 339
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 1 cut(s) 399
SfcI CTRYAG 2 cut(s) 193, 280
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 371
SphI GCATGC 1 cut(s) 869
Sse9I AATT 3 cut(s) 252, 447, 846
SsiI CCGC 3 cut(s) 459, 502, 860
SspI AATATT 2 cut(s) 727, 754
SspMI CTAG 5 cut(s) 336, 635, 779, 885, 892
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
TaqI TCGA 2 cut(s) 693, 801
TaqII GACCGA 1 cut(s) 654
TasI AATT 3 cut(s) 252, 447, 846
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 4 cut(s) 63, 332, 659, 803
Tru1I TTAA 3 cut(s) 132, 551, 729
Tru9I TTAA 3 cut(s) 132, 551, 729
TscAI CASTG 5 cut(s) 493, 538, 678, 780, 837
TseI GCWGC 3 cut(s) 823, 862, 888
TspDTI ATGAA 3 cut(s) 355, 389, 672
TspRI CASTG 5 cut(s) 493, 538, 678, 780, 837
VpaK11BI GGWCC 1 cut(s) 339
VspI ATTAAT 1 cut(s) 729
XceI RCATGY 1 cut(s) 869
XspI CTAG 5 cut(s) 336, 635, 779, 885, 892
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.