Rroxscaffold_1G00057420

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018397
Physical Location & Seq
Reverse (-)
79380305 .. 79384856
4552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057420.1

Sequence Viewer

Length: 1233 bp
ATGGGTGGCTCTGCCTCCCCCACCTACTCAGTTTCCTGTAATCCTGTTACAGCAAAAGTAGTGGGAATCATCTGTGATACTCCGTATTATAACTACTATAAGGAAGACGAAGGGAAGAGGCAGATCATACAGCTAAATGCGGACTACAAGTGCAAAGTTATCAGACTTCTTAGTTCTTATGAGTATCCTAAGAACTACAAGTGCAAGGTGGAGATCTTCTCTTCCGAGACCGGTGAATGGAGCGAGACAGTTATAATTTCCCCTAGACCTTGGTATCATATCTATAGCAGTATTGCTCACAATGGAGTGTTGTATCACTTGTGTCAATCAACTCATTCTAGGACCTGTCTTGCTGGGTTGGATCCTTTCACGATAATGAACAAAATCACGAACAGTACTACTGGCAATGGTATTGATCATTATAAATGTTGTCATGTAGAAATGGATACAACTGTGGTAGGCGGCTTCAGTGGAGATTACTGTGTTGTCAGTGAACGGTCTCTGCGGATTTCCTACTTTGACTGGGATACATTCAGTGTATATGTTTGGGACTTAAAAGAAGAAGAAGAAGAAGAAGGTCATGCTGAGGTGGTCATGGAAGGAACTGGAAAACTGTGTTGGAAACACACGGGGGTTTATTCACTAGACCGAGATATAGCTCCAGATGAATCATCAGTATCAGTGTTTGAGCTGATAGCTATCGATCCAAATAATGATGATATATTGTATCTAAATATTAATGGAGACCTTGTGATGAGCAATATTCAAACAAGAAAGTGGTCCGTGCTAGTTAGAGAGAGTCAAATCATCGATTCTCACTTCTTCCGGTTACAGCTCCCATTGTGGCCAACACCAATTCCTAAGCTACCGCAGCATGCCAATGCCCAACGCCAAAATTCTCTCTTTTTGGATTTGGCCTCTGAACTCCAGAAGTACAGAGCAATACCAAAAGTGAAGTTGTTGCTTCTGAATTCCAGCACCCGAAAAAAGAAAGAAGCTTTGGTTCTTCAGAGCTATTTCTCGTGCAGAGTATGCAATTTCTGGGTTGTAGAACAGAGAAGCTCACCATTGACAAGTCAAGTAATTTCTAGGCGACTCAATCTCCGGATCCAGCACTCTCGACTGGATAAACATGAGCCTGATCCTGCATTTCTTGCTGAGGCCAAAGCTAGTGTAAACCAGTCTACAGCTGAAGCTGGCAGCTCTTCCCAATCCTCCAAGAAAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

410

Amino Acids

46.63

Weight (kDa)

6.2

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 52 - 113 9.5e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 90, 254, 423
AccI GTMKAC 1 cut(s) 1184
AccIII TCCGGA 1 cut(s) 1104
AciI CCGC 4 cut(s) 140, 462, 505, 869
AclWI GGATC 6 cut(s) 356, 369, 698, 1102, 1115, 1136
AcoI YGGCCR 1 cut(s) 845
AcsI RAATTY 2 cut(s) 895, 970
AcuI CTGAAG 3 cut(s) 451, 992, 1212
AfaI GTAC 2 cut(s) 397, 935
AfiI CCNNNNNNNGG 1 cut(s) 237
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 767
AjuI GAANNNNNNNTTGG 4 cut(s) 601, 633, 983, 1015
Alw26I GTCTC 4 cut(s) 221, 239, 504, 738
AlwI GGATC 6 cut(s) 356, 369, 698, 1102, 1115, 1136
Aor13HI TCCGGA 1 cut(s) 1104
AoxI GGCC 3 cut(s) 845, 915, 1161
ApeKI GCWGC 2 cut(s) 871, 1200
ApoI RAATTY 2 cut(s) 895, 970
AseI ATTAAT 1 cut(s) 738
AsiGI ACCGGT 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 342, 780
AsuHPI GGTGA 2 cut(s) 245, 1056
AvaII GGWCC 2 cut(s) 342, 780
BaeI ACNNNNGTAYC 4 cut(s) 257, 290, 438, 471
BalI TGGCCA 1 cut(s) 847
BamHI GGATCC 2 cut(s) 361, 1107
BauI CACGAG 1 cut(s) 1021
BbsI GAAGAC 1 cut(s) 111
BbvCI CCTCAGC 2 cut(s) 585, 1158
BbvI GCAGC 2 cut(s) 883, 1212
BciVI GTATCC 3 cut(s) 195, 439, 520
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 4 cut(s) 221, 239, 504, 738
BfaI CTAG 6 cut(s) 264, 339, 644, 788, 1089, 1170
BfmI CTRYAG 2 cut(s) 283, 1185
BfuI GTATCC 3 cut(s) 195, 439, 520
BglII AGATCT 1 cut(s) 213
BisI GCNGC 3 cut(s) 463, 872, 1201
BlsI GCNGC 3 cut(s) 464, 873, 1202
BmcAI AGTACT 1 cut(s) 397
Bme18I GGWCC 2 cut(s) 342, 780
BmgT120I GGNCC 2 cut(s) 342, 780
BmiI GGNNCC 2 cut(s) 363, 1109
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 2 cut(s) 645, 911
Bpu10I CCTNAGC 3 cut(s) 585, 861, 1158
Bsa29I ATCGAT 2 cut(s) 702, 810
BsaBI GATNNNNATC 1 cut(s) 698
BsaI GGTCTC 3 cut(s) 221, 504, 738
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 3 cut(s) 230, 825, 1104
BsaXI ACNNNNNCTCC 4 cut(s) 735, 765, 1086, 1116
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 5 cut(s) 406, 527, 610, 1128, 1180
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 698
BseAI TCCGGA 1 cut(s) 1104
BseCI ATCGAT 2 cut(s) 702, 810
BseDI CCNNGG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 698
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 42, 576, 1149
BseNI ACTGG 5 cut(s) 406, 527, 610, 1128, 1180
BseXI GCAGC 2 cut(s) 883, 1212
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 1045
BshFI GGCC 3 cut(s) 847, 917, 1163
BshTI ACCGGT 1 cut(s) 230
BshVI ATCGAT 2 cut(s) 702, 810
BsiSI CCGG 3 cut(s) 231, 826, 1105
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 4 cut(s) 221, 239, 504, 738
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 3 cut(s) 847, 917, 1163
Bso31I GGTCTC 3 cut(s) 221, 504, 738
Bsp13I TCCGGA 1 cut(s) 1104
Bsp143I GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
BspACI CCGC 4 cut(s) 140, 462, 505, 869
BspANI GGCC 3 cut(s) 847, 917, 1163
BspCNI CTCAG 3 cut(s) 41, 577, 1150
BspDI ATCGAT 2 cut(s) 702, 810
BspEI TCCGGA 1 cut(s) 1104
BspLI GGNNCC 2 cut(s) 363, 1109
BspPI GGATC 6 cut(s) 356, 369, 698, 1102, 1115, 1136
BspQI GCTCTTC 1 cut(s) 1210
BspTNI GGTCTC 3 cut(s) 221, 504, 738
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 5 cut(s) 406, 527, 610, 1128, 1180
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
BssSI CACGAG 1 cut(s) 1021
BssT1I CCWWGG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 1021
Bst4CI ACNGT 6 cut(s) 250, 395, 454, 482, 498, 615
Bst6I CTCTTC 4 cut(s) 110, 226, 1210, 1221
BstAPI GCANNNNNTGC 2 cut(s) 1032, 1154
BstC8I GCNNGC 2 cut(s) 876, 1198
BstDEI CTNAG 6 cut(s) 28, 170, 189, 585, 861, 1158
BstKTI GATC 7 cut(s) 126, 216, 364, 418, 706, 1110, 1144
BstMAI GTCTC 4 cut(s) 221, 239, 504, 738
BstMBI GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 871, 1032, 1154
BstNSI RCATGY 1 cut(s) 878
BstSFI CTRYAG 2 cut(s) 283, 1185
BstV1I GCAGC 2 cut(s) 883, 1212
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 213, 361, 1107
BstYI RGATCY 3 cut(s) 213, 361, 1107
Bsu15I ATCGAT 2 cut(s) 702, 810
BsuI GTATCC 3 cut(s) 195, 439, 520
BsuRI GGCC 3 cut(s) 847, 917, 1163
BsuTUI ATCGAT 2 cut(s) 702, 810
BtsIMutI CAGTG 4 cut(s) 475, 496, 541, 687
Cac8I GCNNGC 2 cut(s) 876, 1198
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 342, 780
ClaI ATCGAT 2 cut(s) 702, 810
Csp6I GTAC 2 cut(s) 396, 934
CspAI ACCGGT 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 5 cut(s) 434, 581, 595, 875, 1133
CviQI GTAC 2 cut(s) 396, 934
DdeI CTNAG 6 cut(s) 28, 170, 189, 585, 861, 1158
DpnI GATC 7 cut(s) 125, 215, 363, 417, 705, 1109, 1143
DpnII GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
EaeI YGGCCR 1 cut(s) 845
Eam1104I CTCTTC 4 cut(s) 110, 226, 1210, 1221
EarI CTCTTC 4 cut(s) 110, 226, 1210, 1221
Eco130I CCWWGG 1 cut(s) 269
Eco31I GGTCTC 3 cut(s) 221, 504, 738
Eco47I GGWCC 2 cut(s) 342, 780
Eco57I CTGAAG 3 cut(s) 451, 992, 1212
EcoO109I RGGNCCY 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 970
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 5 cut(s) 437, 584, 598, 878, 1136
FaqI GGGAC 1 cut(s) 563
FatI CATG 5 cut(s) 433, 580, 594, 874, 1132
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 3 cut(s) 463, 872, 1201
Fsp4HI GCNGC 3 cut(s) 463, 872, 1201
FspBI CTAG 6 cut(s) 264, 339, 644, 788, 1089, 1170
GluI GCNGC 3 cut(s) 463, 872, 1201
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 2 cut(s) 645, 911
HaeIII GGCC 3 cut(s) 847, 917, 1163
HapII CCGG 3 cut(s) 231, 826, 1105
Hin1II CATG 5 cut(s) 437, 584, 598, 878, 1136
HindIII AAGCTT 1 cut(s) 996
HinfI GANTC 5 cut(s) 66, 668, 799, 812, 1095
HpaII CCGG 3 cut(s) 231, 826, 1105
HphI GGTGA 2 cut(s) 245, 1056
Hpy166II GTNNAC 3 cut(s) 494, 1177, 1185
Hpy188I TCNGA 5 cut(s) 164, 226, 922, 969, 1011
Hpy188III TCNNGA 6 cut(s) 370, 388, 662, 928, 1105, 1119
Hpy8I GTNNAC 3 cut(s) 494, 1177, 1185
HpyAV CCTTC 3 cut(s) 104, 569, 593
HpyCH4III ACNGT 6 cut(s) 250, 395, 454, 482, 498, 615
HpyCH4V TGCA 5 cut(s) 153, 204, 1026, 1035, 1148
HpyF10VI GCNNNNNNNGC 3 cut(s) 871, 1032, 1154
HpyF3I CTNAG 6 cut(s) 28, 170, 189, 585, 861, 1158
Hsp92II CATG 5 cut(s) 437, 584, 598, 878, 1136
Kpn2I TCCGGA 1 cut(s) 1104
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
LguI GCTCTTC 1 cut(s) 1210
LmnI GCTCC 3 cut(s) 240, 664, 840
Lsp1109I GCAGC 2 cut(s) 883, 1212
MaeI CTAG 6 cut(s) 264, 339, 644, 788, 1089, 1170
MaeIII GTNAC 2 cut(s) 46, 828
MalI GATC 7 cut(s) 125, 215, 363, 417, 705, 1109, 1143
MboI GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
MflI RGATCY 3 cut(s) 213, 361, 1107
MlsI TGGCCA 1 cut(s) 847
MluCI AATT 6 cut(s) 255, 855, 895, 970, 1036, 1083
MluNI TGGCCA 1 cut(s) 847
MlyI GAGTC 2 cut(s) 808, 1089
MmeI TCCRAC 2 cut(s) 339, 599
MnlI CCTC 6 cut(s) 25, 111, 580, 928, 1153, 1225
Mox20I TGGCCA 1 cut(s) 847
MroI TCCGGA 1 cut(s) 1104
MscI TGGCCA 1 cut(s) 847
MseI TTAA 2 cut(s) 554, 738
MslI CAYNNNNRTG 2 cut(s) 374, 879
Msp20I TGGCCA 1 cut(s) 847
MspA1I CMGCKG 1 cut(s) 1190
MspI CCGG 3 cut(s) 231, 826, 1105
MwoI GCNNNNNNNGC 3 cut(s) 871, 1032, 1154
NdeII GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
NlaIII CATG 5 cut(s) 437, 584, 598, 878, 1136
NlaIV GGNNCC 2 cut(s) 363, 1109
NspI RCATGY 1 cut(s) 878
PaeI GCATGC 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 1210
PfeI GAWTC 3 cut(s) 66, 668, 812
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 3 cut(s) 464, 873, 1202
PleI GAGTC 2 cut(s) 807, 1089
PpsI GAGTC 2 cut(s) 807, 1089
PpuMI RGGWCCY 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 738
PsiI TTATAA 3 cut(s) 90, 254, 423
Psp5II RGGWCCY 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 363, 1109
PspPI GGNCC 2 cut(s) 342, 780
PspPPI RGGWCCY 1 cut(s) 342
PsuI RGATCY 3 cut(s) 213, 361, 1107
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 2 cut(s) 397, 935
RsaNI GTAC 2 cut(s) 396, 934
RseI CAYNNNNRTG 2 cut(s) 374, 879
SapI GCTCTTC 1 cut(s) 1210
SaqAI TTAA 2 cut(s) 554, 738
SatI GCNGC 3 cut(s) 463, 872, 1201
Sau3AI GATC 7 cut(s) 123, 213, 361, 415, 703, 1107, 1141
Sau96I GGNCC 2 cut(s) 342, 780
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 2 cut(s) 808, 1089
SfcI CTRYAG 2 cut(s) 283, 1185
SinI GGWCC 2 cut(s) 342, 780
SmiMI CAYNNNNRTG 2 cut(s) 374, 879
SphI GCATGC 1 cut(s) 878
Sse9I AATT 6 cut(s) 255, 855, 895, 970, 1036, 1083
SsiI CCGC 4 cut(s) 140, 462, 505, 869
SspI AATATT 2 cut(s) 736, 763
SspMI CTAG 6 cut(s) 264, 339, 644, 788, 1089, 1170
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 6 cut(s) 250, 395, 454, 482, 498, 615
TaqI TCGA 3 cut(s) 702, 810, 1120
TaqII GACCGA 1 cut(s) 663
TasI AATT 6 cut(s) 255, 855, 895, 970, 1036, 1083
TatI WGTACW 2 cut(s) 395, 933
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 3 cut(s) 66, 668, 812
Tru1I TTAA 2 cut(s) 554, 738
Tru9I TTAA 2 cut(s) 554, 738
TscAI CASTG 4 cut(s) 475, 496, 541, 687
TseI GCWGC 2 cut(s) 871, 1200
TspDTI ATGAA 2 cut(s) 392, 681
TspGWI ACGGA 2 cut(s) 72, 772
TspRI CASTG 4 cut(s) 475, 496, 541, 687
VpaK11BI GGWCC 2 cut(s) 342, 780
VspI ATTAAT 1 cut(s) 738
XapI RAATTY 2 cut(s) 895, 970
XceI RCATGY 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 1184
XspI CTAG 6 cut(s) 264, 339, 644, 788, 1089, 1170
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.