RLG00000032577

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018397
Physical Location & Seq
Forward (+)
16703392 .. 16704507
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032577

Sequence Viewer

Length: 1116 bp
ATGGCCACTCTGATAAACATTAGAGGGGAGGAATTACATGACAGAATGTCGTCCTTGTCATCCTCGATGCGGCTAACTCAGCTGTTGAAAAGACTTGTGAGTTTCCACGGTTTCAAAGTAGAGCCAATTGTTGTAGCCTCTTATAATGACTTGGTTCTGTGCTGTGCACCTCTTAATAATCAAAGTAATTACTACATCTGCAGTCCGTACACCATGCAATGGGTGGCTGTGCCTCCCCCACCCACTCAGTTTCCTGTTACAGCAAAAGTAGTGGGAATCATCTGTGATACTCCGTATTATAACTACTATAAGAAAGACGAAGGGAAGAGGCAGATCATACAGCTTAATGAGGACTACAAGTGCAAAGTTATCAGACTTCTTAGCTCTTATGAGTATCCTAAGAACTACAAGTGCAAGGTGGAGATCTTTTCTTCCGAGACCGGTGAATGGAGCGAGACAGTTATAATTTCTCCTGGACCTTGGCATCATATCTATAGCAGTATTGCTCACAATGGAGTGTTGTATCACTTGTGTCAATCAACTCATTCTAGGACCTGTCTTGCTGGGTTGGATCCTTTCATGATAATGAACAAAATCACGAACAGTCCTACTGGCAATGGTGTTGATCATTATAAATGTTGTCATGTAGAAATGGATACAACTGTGGTAGGCGGCTTCAGTGGAGATTACTGTGTTGTCAGTGAAAGGTCTCTGCGGATTTCCTACTTTGACTGGGATACATTCAGTGTGTATGTTTGGGACTTAAAAGAAGAAGAAGAAGAAGAAGAAGGTCATGCTGAGATGGTCATAGAAGGAACTGAAAAACTGTGTTGGAAACACACGGGGGTTTATTCACTAGACCGAGATATAGCTCCAGATGAATCATCAGTATCAGTGTCTGAGCTGATAGCTATTGATCCAAATAATGATGATATATTGTTTCTAAATATTAATGGAGACCTTGTGATGAGCAATATTCAAACAAGAAAGTGGTCAGTGCTAGTTAGAGGGAGTCAAATCATCGATTCTCACTTCTTCCAGTTACAGCTCCCATTGTGGCCAACACCAATTCCTAAACTACCGCAGCATGCCAATGGTGGAGGGACTAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.1

Weight (kDa)

5.36

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 37 - 183 1.9e-13 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 144, 300, 464, 633
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 4 cut(s) 70, 672, 715, 1082
AclWI GGATC 3 cut(s) 566, 579, 911
AcoI YGGCCR 2 cut(s) 3, 1058
AcuI CTGAAG 1 cut(s) 661
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 69, 219, 447
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 3 cut(s) 88, 115, 980
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 8 cut(s) 82, 343, 384, 872, 904, 911, 1048, 1113
AluI AGCT 8 cut(s) 82, 343, 384, 872, 904, 911, 1048, 1113
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 4 cut(s) 431, 449, 714, 951
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 3 cut(s) 566, 579, 911
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 2 cut(s) 3, 1058
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 1084, 1110
AseI ATTAAT 1 cut(s) 951
AsiGI ACCGGT 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 476, 552
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 2 cut(s) 476, 552
BaeGI GKGCMC 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 648, 681
BalI TGGCCA 2 cut(s) 5, 1060
BamHI GGATCC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 1096
BccI CCATC 1 cut(s) 796
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 3 cut(s) 405, 649, 730
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 4 cut(s) 431, 449, 714, 951
BfaI CTAG 5 cut(s) 549, 857, 1001, 1107, 1114
BfmI CTRYAG 2 cut(s) 199, 493
BfuI GTATCC 3 cut(s) 405, 649, 730
BglII AGATCT 1 cut(s) 423
BisI GCNGC 4 cut(s) 71, 673, 1085, 1111
BlsI GCNGC 4 cut(s) 72, 674, 1086, 1112
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 2 cut(s) 476, 552
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 476, 552
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 2 cut(s) 57, 493
BmuI ACTGGG 1 cut(s) 742
BpmI CTGGAG 1 cut(s) 858
Bsa29I ATCGAT 1 cut(s) 1023
BsaI GGTCTC 3 cut(s) 431, 714, 951
BsaJI CCNNGG 2 cut(s) 106, 479
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 219, 447
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 616, 737, 1039
Bse3DI GCAATG 2 cut(s) 224, 622
BseBI CCWGG 1 cut(s) 474
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 2 cut(s) 106, 479
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 69, 219, 447
BseMI GCAATG 2 cut(s) 224, 622
BseMII CTCAG 4 cut(s) 92, 260, 789, 891
BseNI ACTGG 3 cut(s) 616, 737, 1039
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 1 cut(s) 1096
BseYI CCCAGC 1 cut(s) 563
BshFI GGCC 2 cut(s) 5, 1060
BshTI ACCGGT 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 1023
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 69, 219, 447
BsmAI GTCTC 4 cut(s) 431, 449, 714, 951
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 2 cut(s) 5, 1060
Bso31I GGTCTC 3 cut(s) 431, 714, 951
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 5 cut(s) 333, 423, 571, 625, 916
BspACI CCGC 4 cut(s) 70, 672, 715, 1082
BspANI GGCC 2 cut(s) 5, 1060
BspCNI CTCAG 4 cut(s) 91, 259, 790, 892
BspDI ATCGAT 1 cut(s) 1023
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 573
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 3 cut(s) 566, 579, 911
BspTNI GGTCTC 3 cut(s) 431, 714, 951
BsrDI GCAATG 2 cut(s) 224, 622
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 3 cut(s) 616, 737, 1039
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 106, 479
BssMI GATC 5 cut(s) 333, 423, 571, 625, 916
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 6 cut(s) 110, 460, 605, 664, 692, 828
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 1089
BstDEI CTNAG 6 cut(s) 78, 246, 380, 399, 798, 900
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 5 cut(s) 336, 426, 574, 628, 919
BstMAI GTCTC 4 cut(s) 431, 449, 714, 951
BstMBI GATC 5 cut(s) 333, 423, 571, 625, 916
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 1091
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 2 cut(s) 199, 493
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 1096
BstX2I RGATCY 2 cut(s) 423, 571
BstYI RGATCY 2 cut(s) 423, 571
Bsu15I ATCGAT 1 cut(s) 1023
BsuI GTATCC 3 cut(s) 405, 649, 730
BsuRI GGCC 2 cut(s) 5, 1060
BsuTUI ATCGAT 1 cut(s) 1023
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 5 cut(s) 685, 706, 751, 900, 1002
Cac8I GCNNGC 1 cut(s) 1089
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 476, 552
ClaI ATCGAT 1 cut(s) 1023
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 440
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 6 cut(s) 38, 214, 580, 644, 794, 1088
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 6 cut(s) 78, 246, 380, 399, 798, 900
DpnI GATC 5 cut(s) 335, 425, 573, 627, 918
DpnII GATC 5 cut(s) 333, 423, 571, 625, 916
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 3, 1058
Eam1104I CTCTTC 1 cut(s) 320
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 479
Eco31I GGTCTC 3 cut(s) 431, 714, 951
Eco47I GGWCC 2 cut(s) 476, 552
Eco57I CTGAAG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 6 cut(s) 41, 217, 583, 647, 797, 1091
FaqI GGGAC 1 cut(s) 773
FatI CATG 6 cut(s) 37, 213, 579, 643, 793, 1087
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 71, 673, 1085, 1111
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 4 cut(s) 71, 673, 1085, 1111
FspBI CTAG 5 cut(s) 549, 857, 1001, 1107, 1114
GluI GCNGC 4 cut(s) 71, 673, 1085, 1111
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 2 cut(s) 5, 1060
HapII CCGG 1 cut(s) 441
Hin1II CATG 6 cut(s) 41, 217, 583, 647, 797, 1091
HinfI GANTC 4 cut(s) 276, 881, 1012, 1025
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 167, 210
Hpy188I TCNGA 4 cut(s) 12, 374, 436, 901
Hpy188III TCNNGA 3 cut(s) 580, 598, 875
Hpy8I GTNNAC 2 cut(s) 167, 210
HpyAV CCTTC 3 cut(s) 314, 782, 806
HpyCH4III ACNGT 6 cut(s) 110, 460, 605, 664, 692, 828
HpyCH4V TGCA 5 cut(s) 167, 201, 217, 363, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 6 cut(s) 78, 246, 380, 399, 798, 900
Hsp92II CATG 6 cut(s) 41, 217, 583, 647, 797, 1091
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 333, 423, 571, 625, 916
LmnI GCTCC 3 cut(s) 450, 877, 1053
Lsp1109I GCAGC 1 cut(s) 1096
LweI GCATC 2 cut(s) 57, 493
MaeI CTAG 5 cut(s) 549, 857, 1001, 1107, 1114
MaeIII GTNAC 2 cut(s) 256, 1041
MalI GATC 5 cut(s) 335, 425, 573, 627, 918
MboI GATC 5 cut(s) 333, 423, 571, 625, 916
MboII GAAGA 9 cut(s) 337, 423, 782, 785, 788, 791, 794, 797, 1027
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 423, 571
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 2 cut(s) 5, 1060
MluCI AATT 5 cut(s) 32, 126, 187, 465, 1068
MluNI TGGCCA 2 cut(s) 5, 1060
MlyI GAGTC 1 cut(s) 1021
MmeI TCCRAC 2 cut(s) 549, 812
Mox20I TGGCCA 2 cut(s) 5, 1060
MscI TGGCCA 2 cut(s) 5, 1060
MseI TTAA 4 cut(s) 174, 345, 764, 951
MslI CAYNNNNRTG 2 cut(s) 584, 1092
Msp20I TGGCCA 2 cut(s) 5, 1060
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 474
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 5 cut(s) 333, 423, 571, 625, 916
NlaIII CATG 6 cut(s) 41, 217, 583, 647, 797, 1091
NlaIV GGNNCC 1 cut(s) 573
NspI RCATGY 1 cut(s) 1091
PaeI GCATGC 1 cut(s) 1091
PagI TCATGA 1 cut(s) 579
PfeI GAWTC 3 cut(s) 276, 881, 1025
PflMI CCANNNNNTGG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 4 cut(s) 72, 674, 1086, 1112
PleI GAGTC 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 1020
PpuMI RGGWCCY 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 4 cut(s) 144, 300, 464, 633
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 2 cut(s) 476, 552
PspPPI RGGWCCY 1 cut(s) 552
PstI CTGCAG 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 423, 571
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 584, 1092
SaqAI TTAA 4 cut(s) 174, 345, 764, 951
SatI GCNGC 4 cut(s) 71, 673, 1085, 1111
Sau3AI GATC 5 cut(s) 333, 423, 571, 625, 916
Sau96I GGNCC 2 cut(s) 476, 552
SchI GAGTC 1 cut(s) 1021
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 169
SfaNI GCATC 2 cut(s) 57, 493
SfcI CTRYAG 2 cut(s) 199, 493
SinI GGWCC 2 cut(s) 476, 552
SmiMI CAYNNNNRTG 2 cut(s) 584, 1092
SphI GCATGC 1 cut(s) 1091
Sse9I AATT 5 cut(s) 32, 126, 187, 465, 1068
SsiI CCGC 4 cut(s) 70, 672, 715, 1082
SspI AATATT 2 cut(s) 949, 976
SspMI CTAG 5 cut(s) 549, 857, 1001, 1107, 1114
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 6 cut(s) 110, 460, 605, 664, 692, 828
TaqI TCGA 2 cut(s) 65, 1023
TaqII GACCGA 1 cut(s) 876
TasI AATT 5 cut(s) 32, 126, 187, 465, 1068
TauI GCSGC 2 cut(s) 73, 675
TfiI GAWTC 3 cut(s) 276, 881, 1025
Tru1I TTAA 4 cut(s) 174, 345, 764, 951
Tru9I TTAA 4 cut(s) 174, 345, 764, 951
TscAI CASTG 5 cut(s) 685, 706, 751, 900, 1002
TseI GCWGC 2 cut(s) 1084, 1110
TspDTI ATGAA 3 cut(s) 568, 602, 894
TspGWI ACGGA 2 cut(s) 195, 282
TspRI CASTG 5 cut(s) 685, 706, 751, 900, 1002
Van91I CCANNNNNTGG 1 cut(s) 219
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 476, 552
VspI ATTAAT 1 cut(s) 951
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 5 cut(s) 549, 857, 1001, 1107, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.