RchiOBHm_Chr5g0021011

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018397
Physical Location & Seq
Forward (+)
15262264 .. 15263559
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30108

Sequence Viewer

Length: 1296 bp
ATGAATATTACTAATATCAATGAACTTCCTTACGTTTTATTGGGTGAAATCATTTCTCGACTTGCTTGCTATAAATTAATTTTTCAATGCAAGTGTGTGTCCAAGCGTTGGTGTACTTTCATCTCCGAACCTTATTTCATTGGCCGTTTTCTCCGTGTCCAAATTGATAAACAAATCCCAACAATGGCCACTCTGATAAACATTAGAGGGGAGGAATTACATGACAGAATGTCTTCCTTGTCATCCTCGATGCGGCTAACTCAGTTGTTGAAAAGACTCGTGAGTTTCCACGGTTTCAAAGTAGAGCCAATTGTTGTAGCCACTTATAATGACTTAGTTCTGTGCTGTGCACCTCTTAATAATCAAAGTAATTACTACATCTGCAATCCGTACACCATGCAATGGGTGGCTCTGCCTCCCCCACCTACTCAGTTTCCGGTTACAGCAAAAGTAGTGGGAATCATCTGTGATACTCCGTATTATAACTACTATAAGGAAGACGCAGGGAAGAGGCAGATCATACAGCTTAATGCGGACTACAAGTGCAAAGTTATCAGACTTCTTAGCTCTTATGAGTATCCTAAGAACTACAAGTGCAAGGTGGAGATCTTCTCTTCCGAGACCGGTGAATGGAGCGAGACAGTTATAATTTCCCCTAAACCTTGGTATCATATCTATAGCAGTATTGCTCACAATGGAGTGTTGTATCACTTGTGTCAATCAACTGATTCTAGGACCTGTCTTGCTGGGTTGGATCCTTTCATGATAATGAACAAAATCACGAACAGTACTACTGGCAATGGTGTTGATCATTATAAATGTTGTCATGTAGAAATGGATACAACCGTGGTAGGCGGCTTCAGTGGAGATTACTGTGTTGTCAGTGAACGGTCTCTGCGGATTTCCTACTTTGACTGGGATACATTCAGTGTATATGTTTGGGACTTAAAAGAAGCAGAAGAAGAAGAATGTCACGCTGAGGTGGTCATAGAAGGAACTGGAAAACTGTGTTGGAAACACACGGGGGTTTTTTCACTAGACCGAGATATAGCTCCAGATGAATCATCAGTATCAGTGTTTGAGCTGATAGCTATCGATCCAAATAATGATGATATATTGTATCTAAATATTAATGGAGACCTTGTGATGAGCAATATTCAAACAAGAAAGTGGTCCGTACTAGTTAGAGAGAGTCAAATCATCGATTCTCACTTCTTCCAGTTACAGCTCCCACTGTGGCCAACACCAATTCCTAAACTACCACAGCATGCCAATGGTGGAGGAACTAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

431

Amino Acids

49.22

Weight (kDa)

5.8

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 97 - 245 1e-13 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 327, 483, 647, 816
AccB7I CCANNNNNTGG 2 cut(s) 108, 402
AciI CCGC 4 cut(s) 253, 533, 855, 898
AclWI GGATC 3 cut(s) 749, 762, 1091
AcoI YGGCCR 3 cut(s) 142, 186, 1238
AcuI CTGAAG 1 cut(s) 844
AfaI GTAC 4 cut(s) 115, 392, 790, 1179
AfiI CCNNNNNNNGG 5 cut(s) 108, 184, 252, 402, 630
AgeI ACCGGT 1 cut(s) 623
AgsI TTSAA 4 cut(s) 86, 271, 298, 1160
AhdI GACNNNNNGTC 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 994, 1026
AluBI AGCT 7 cut(s) 526, 567, 1052, 1084, 1091, 1228, 1293
AluI AGCT 7 cut(s) 526, 567, 1052, 1084, 1091, 1228, 1293
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 4 cut(s) 614, 632, 897, 1131
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 3 cut(s) 749, 762, 1091
AoxI GGCC 3 cut(s) 142, 186, 1238
ApaLI GTGCAC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 1290
AseI ATTAAT 2 cut(s) 77, 1131
AsiGI ACCGGT 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 735, 1173
AsuHPI GGTGA 2 cut(s) 56, 638
AvaII GGWCC 2 cut(s) 735, 1173
BaeGI GKGCMC 1 cut(s) 352
BaeI ACNNNNGTAYC 4 cut(s) 650, 683, 831, 864
BalI TGGCCA 2 cut(s) 188, 1240
BamHI GGATCC 1 cut(s) 754
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 225, 504
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 978
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciVI GTATCC 3 cut(s) 588, 832, 913
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 4 cut(s) 614, 632, 897, 1131
BcuI ACTAGT 1 cut(s) 1180
BfaI CTAG 5 cut(s) 732, 1037, 1181, 1287, 1294
BfmI CTRYAG 1 cut(s) 676
BfuI GTATCC 3 cut(s) 588, 832, 913
BglII AGATCT 1 cut(s) 606
BisI GCNGC 3 cut(s) 254, 856, 1291
BlsI GCNGC 3 cut(s) 255, 857, 1292
BmcAI AGTACT 1 cut(s) 790
Bme18I GGWCC 2 cut(s) 735, 1173
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 735, 1173
BmiI GGNNCC 1 cut(s) 756
BmrI ACTGGG 1 cut(s) 925
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 925
BpiI GAAGAC 2 cut(s) 225, 504
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 1 cut(s) 1038
Bpu10I CCTNAGC 1 cut(s) 978
Bsa29I ATCGAT 2 cut(s) 1095, 1203
BsaBI GATNNNNATC 1 cut(s) 1091
BsaI GGTCTC 3 cut(s) 614, 897, 1131
BsaJI CCNNGG 3 cut(s) 289, 662, 846
BsaWI WCCGGW 2 cut(s) 436, 623
BsaXI ACNNNNNCTCC 2 cut(s) 1128, 1158
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 184, 252, 402, 630
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 4 cut(s) 799, 920, 1003, 1219
Bse3DI GCAATG 2 cut(s) 407, 805
Bse8I GATNNNNATC 1 cut(s) 1091
BseCI ATCGAT 2 cut(s) 1095, 1203
BseDI CCNNGG 3 cut(s) 289, 662, 846
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 5 cut(s) 108, 184, 252, 402, 630
BseMI GCAATG 2 cut(s) 407, 805
BseMII CTCAG 3 cut(s) 275, 443, 969
BseNI ACTGG 4 cut(s) 799, 920, 1003, 1219
BseSI GKGCMC 1 cut(s) 352
BseYI CCCAGC 1 cut(s) 746
BshFI GGCC 3 cut(s) 144, 188, 1240
BshTI ACCGGT 1 cut(s) 623
BshVI ATCGAT 2 cut(s) 1095, 1203
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 2 cut(s) 437, 624
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 5 cut(s) 108, 184, 252, 402, 630
BsmAI GTCTC 4 cut(s) 614, 632, 897, 1131
BsmFI GGGAC 1 cut(s) 956
BsnI GGCC 3 cut(s) 144, 188, 1240
Bso31I GGTCTC 3 cut(s) 614, 897, 1131
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 516, 606, 754, 808, 1096
BspACI CCGC 4 cut(s) 253, 533, 855, 898
BspANI GGCC 3 cut(s) 144, 188, 1240
BspCNI CTCAG 3 cut(s) 274, 442, 970
BspDI ATCGAT 2 cut(s) 1095, 1203
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 3 cut(s) 749, 762, 1091
BspTNI GGTCTC 3 cut(s) 614, 897, 1131
BsrDI GCAATG 2 cut(s) 407, 805
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 4 cut(s) 799, 920, 1003, 1219
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 289, 662, 846
BssMI GATC 5 cut(s) 516, 606, 754, 808, 1096
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 278
Bst4CI ACNGT 8 cut(s) 293, 643, 788, 847, 875, 891, 1008, 1236
Bst6I CTCTTC 2 cut(s) 503, 619
BstC8I GCNNGC 2 cut(s) 67, 1269
BstDEI CTNAG 6 cut(s) 261, 334, 429, 563, 582, 978
BstDSI CCRYGG 2 cut(s) 289, 846
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 5 cut(s) 519, 609, 757, 811, 1099
BstMAI GTCTC 4 cut(s) 614, 632, 897, 1131
BstMBI GATC 5 cut(s) 516, 606, 754, 808, 1096
BstNSI RCATGY 1 cut(s) 1271
BstSFI CTRYAG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 225, 504
BstX2I RGATCY 2 cut(s) 606, 754
BstYI RGATCY 2 cut(s) 606, 754
Bsu15I ATCGAT 2 cut(s) 1095, 1203
BsuI GTATCC 3 cut(s) 588, 832, 913
BsuRI GGCC 3 cut(s) 144, 188, 1240
BsuTUI ATCGAT 2 cut(s) 1095, 1203
BtgI CCRYGG 2 cut(s) 289, 846
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 5 cut(s) 868, 889, 934, 1080, 1232
Cac8I GCNNGC 2 cut(s) 67, 1269
CciI TCATGA 1 cut(s) 762
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 735, 1173
ClaI ATCGAT 2 cut(s) 1095, 1203
CseI GACGC 1 cut(s) 509
Csp6I GTAC 4 cut(s) 114, 391, 789, 1178
CspAI ACCGGT 1 cut(s) 623
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 5 cut(s) 221, 397, 763, 827, 1268
CviQI GTAC 4 cut(s) 114, 391, 789, 1178
DdeI CTNAG 6 cut(s) 261, 334, 429, 563, 582, 978
DpnI GATC 5 cut(s) 518, 608, 756, 810, 1098
DpnII GATC 5 cut(s) 516, 606, 754, 808, 1096
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 3 cut(s) 142, 186, 1238
Eam1104I CTCTTC 2 cut(s) 503, 619
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 2 cut(s) 503, 619
Eco130I CCWWGG 1 cut(s) 662
Eco31I GGTCTC 3 cut(s) 614, 897, 1131
Eco47I GGWCC 2 cut(s) 735, 1173
Eco57I CTGAAG 1 cut(s) 844
EcoO109I RGGNCCY 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 5 cut(s) 224, 400, 766, 830, 1271
FaqI GGGAC 1 cut(s) 956
FatI CATG 5 cut(s) 220, 396, 762, 826, 1267
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 3 cut(s) 254, 856, 1291
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 254, 856, 1291
FspBI CTAG 5 cut(s) 732, 1037, 1181, 1287, 1294
GluI GCNGC 3 cut(s) 254, 856, 1291
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 1038
HaeIII GGCC 3 cut(s) 144, 188, 1240
HapII CCGG 2 cut(s) 437, 624
HgaI GACGC 1 cut(s) 509
Hin1II CATG 5 cut(s) 224, 400, 766, 830, 1271
HinfI GANTC 6 cut(s) 276, 459, 728, 1061, 1192, 1205
HpaII CCGG 2 cut(s) 437, 624
HphI GGTGA 2 cut(s) 56, 638
Hpy166II GTNNAC 4 cut(s) 114, 350, 393, 887
Hpy188I TCNGA 4 cut(s) 127, 195, 557, 619
Hpy188III TCNNGA 5 cut(s) 57, 280, 763, 781, 1055
Hpy8I GTNNAC 4 cut(s) 114, 350, 393, 887
HpyAV CCTTC 1 cut(s) 986
HpyCH4III ACNGT 8 cut(s) 293, 643, 788, 847, 875, 891, 1008, 1236
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 90, 350, 384, 400, 546, 597
HpyF3I CTNAG 6 cut(s) 261, 334, 429, 563, 582, 978
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 224, 400, 766, 830, 1271
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 516, 606, 754, 808, 1096
LmnI GCTCC 3 cut(s) 633, 1057, 1233
LweI GCATC 1 cut(s) 240
MaeI CTAG 5 cut(s) 732, 1037, 1181, 1287, 1294
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 439, 971, 1221
MalI GATC 5 cut(s) 518, 608, 756, 810, 1098
MboI GATC 5 cut(s) 516, 606, 754, 808, 1096
MboII GAAGA 9 cut(s) 225, 509, 520, 601, 606, 971, 974, 977, 1207
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 606, 754
MhlI GDGCHC 1 cut(s) 352
MlsI TGGCCA 2 cut(s) 188, 1240
MluCI AATT 8 cut(s) 74, 78, 162, 215, 309, 370, 648, 1248
MluNI TGGCCA 2 cut(s) 188, 1240
MlyI GAGTC 2 cut(s) 270, 1201
MmeI TCCRAC 2 cut(s) 732, 992
MnlI CCTC 8 cut(s) 200, 205, 256, 363, 426, 504, 973, 1274
Mox20I TGGCCA 2 cut(s) 188, 1240
MroXI GAANNNNTTC 1 cut(s) 232
MscI TGGCCA 2 cut(s) 188, 1240
MseI TTAA 5 cut(s) 77, 357, 528, 947, 1131
MslI CAYNNNNRTG 2 cut(s) 767, 1272
Msp20I TGGCCA 2 cut(s) 188, 1240
MspI CCGG 2 cut(s) 437, 624
MunI CAATTG 1 cut(s) 309
NdeII GATC 5 cut(s) 516, 606, 754, 808, 1096
NlaIII CATG 5 cut(s) 224, 400, 766, 830, 1271
NlaIV GGNNCC 1 cut(s) 756
NmuCI GTSAC 1 cut(s) 971
NspI RCATGY 1 cut(s) 1271
PaeI GCATGC 1 cut(s) 1271
PagI TCATGA 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 4 cut(s) 459, 728, 1061, 1205
PflMI CCANNNNNTGG 2 cut(s) 108, 402
PinAI ACCGGT 1 cut(s) 623
PkrI GCNGC 3 cut(s) 255, 857, 1292
PleI GAGTC 2 cut(s) 270, 1200
PpsI GAGTC 2 cut(s) 270, 1200
PpuMI RGGWCCY 1 cut(s) 735
PshBI ATTAAT 2 cut(s) 77, 1131
PsiI TTATAA 4 cut(s) 327, 483, 647, 816
Psp5II RGGWCCY 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 746
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 2 cut(s) 735, 1173
PspPPI RGGWCCY 1 cut(s) 735
PsuI RGATCY 2 cut(s) 606, 754
RsaI GTAC 4 cut(s) 115, 392, 790, 1179
RsaNI GTAC 4 cut(s) 114, 391, 789, 1178
RseI CAYNNNNRTG 2 cut(s) 767, 1272
SaqAI TTAA 5 cut(s) 77, 357, 528, 947, 1131
SatI GCNGC 3 cut(s) 254, 856, 1291
Sau3AI GATC 5 cut(s) 516, 606, 754, 808, 1096
Sau96I GGNCC 2 cut(s) 735, 1173
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 2 cut(s) 270, 1201
SduI GDGCHC 1 cut(s) 352
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 735, 1173
SmiMI CAYNNNNRTG 2 cut(s) 767, 1272
SpeI ACTAGT 1 cut(s) 1180
SphI GCATGC 1 cut(s) 1271
Sse9I AATT 8 cut(s) 74, 78, 162, 215, 309, 370, 648, 1248
SsiI CCGC 4 cut(s) 253, 533, 855, 898
SspI AATATT 3 cut(s) 7, 1129, 1156
SspMI CTAG 5 cut(s) 732, 1037, 1181, 1287, 1294
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 8 cut(s) 293, 643, 788, 847, 875, 891, 1008, 1236
TaiI ACGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 58, 248, 1095, 1203
TaqII GACCGA 1 cut(s) 1056
TasI AATT 8 cut(s) 74, 78, 162, 215, 309, 370, 648, 1248
TatI WGTACW 2 cut(s) 113, 788
TauI GCSGC 2 cut(s) 256, 858
TfiI GAWTC 4 cut(s) 459, 728, 1061, 1205
Tru1I TTAA 5 cut(s) 77, 357, 528, 947, 1131
Tru9I TTAA 5 cut(s) 77, 357, 528, 947, 1131
TscAI CASTG 5 cut(s) 868, 889, 934, 1080, 1239
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 1 cut(s) 1290
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 7 cut(s) 17, 36, 109, 127, 751, 785, 1074
TspGWI ACGGA 4 cut(s) 143, 378, 465, 1165
TspRI CASTG 5 cut(s) 868, 889, 934, 1080, 1239
Van91I CCANNNNNTGG 2 cut(s) 108, 402
VneI GTGCAC 1 cut(s) 348
VpaK11BI GGWCC 2 cut(s) 735, 1173
VspI ATTAAT 2 cut(s) 77, 1131
XceI RCATGY 1 cut(s) 1271
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 5 cut(s) 732, 1037, 1181, 1287, 1294
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.