FvH4_3g13060

cationic amino acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
7807302 .. 7810186
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13060.t1

Sequence Viewer

Length: 1782 bp
ATGGGTTCTGAGGGAGAAATTGGTGAAGAAATCCAGCCAAGAACTTACTGGAGATGGAGCAAACAAGATTTCCTACCAGAAGAGTCCTTTCAAAGCTGGAGTGCATATCAAACTGCCTTGTCACAAACACACCACAGGTTCAAGGATCGACTCATAAGCAGATCAAATGATGCAAATGAGACTGTGGAGCTTCGGAAACAAAGTGAGAATGACATGAAACGTTGCCTCACCTGGTGGGATCTCATCTGGTTTGGTTTCGGATCAGTCATTGGTGCAGGCATCTTTGTGCTTACTGGGCAAGAAACCCATGATCACGCTGGACCAGCTATTGTGTTATCCTATGTTGCTTCAGGTATCTCGGCAATGCTCTCTGTCTTCTGCTACACTGAATTTTCAGTTGAGATCCCAGTGGCTGGTGGATCTTTTGCTTACCTGCGGATTGAGCTAGGAGACTTTGTAGCGTTCATAACAGCAGGAAACATACTTCTTGAGAGTGTTGTAGGAAGTGCAGCAGTTTCCAGAGCATGGACTTCTTACTTTACATCGCTCTTGAATCGTCCCTCCAACTCTTTGCGGTTGCACACAAATCTCACTGAAGGCTACAATCTCCTGGACCCAATAGCTGTTGTTGTTCTGGCTGTAGCTGCTACAATTACAATGATCAGCACAAGGAAAACCTCCTACTTGAATTGGATAGCATCCGCAATCAATAATGTTGTAATATTGTTTGTATTGATTGCAGGGTTTTCCCATGCTAATCTCTCAAATATGAAACCTTTTATGCCTTTTGGGCCAAAAGGGGTCTTCCAAGCAGCTGCAATTGTTTACTTTGCATACGGAGGATTTGACAACATTGCCACAATGGCTGAAGAAACCAAAAATCCATCCAGAGACATACCGATTGGATTGCTTGGATCAATGTCGATCATAACTGTTGTATATTGTTTGATGGCACTTTCACTCCCTATGATGCAGAAATACACAGATATAGACACAGGAGCAGCTTACTCTATGGCATTTCAAAGTGTGGGCATGACATGGGCCAAGTACCTGGTAGCTCTTGGTGCTCTCAAGGGAATGACCACTGTTCTTCTGGTGGGAACACTTGGACAGGCTCGGTATATCACTCACATAGCACGAGCGCACATGATTCCACCATGGTTTGCTCTAGTCCATCCAAAGACAGGAACCCCCATAAACGCTACACTCTTGATATTTGTTTCAAGTTCCTGCATTGCTTTCTTTTCAAGCTTGGATGTCTTGACAAGCCTGTTATCGGTGAGCACACTCTTTATCTTCATGATGATGGCAGTTGCACTTCTAGTGAGAAGATACTATGTGACAGATGTCACCCCAAAACCACATCTCTTGAAGCTAGTTGTTTACTTGGTGATCATTATTTCTTCCTCTATAGGGACTTCAGCTTACTGGGGATTAAATCCCAATGGTTGGATTGGTTATGTAGTGACAGTTCCAATTTGGTTCTTCACGACTTTGGCAATGTCAGTGTTTCTACCTCAACAGAGGTCACCAAAAGTCTGGGGGGTTCCACTGGTTCCTTGGTTGCCATCCTTGTCAATCGCCACAAATATTTTTCTTATGGGATCTTTGAGTTCTTCTGCTTTTATAAGATTTGGGATATGTACTGCTGTGATGCTTATATACTATGCTTTCTTTGGCCTTCATGCAACCTATGATATGGCCCATAAGAAAGGTATGCCAGAATCGCCAGAACCCCTGAAAGTTGTCAATAGCAACTCCAGAGAGAAGGCAGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

594

Amino Acids

65.36

Weight (kDa)

8.41

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 76 - 482 3e-46 Amino acid permease
AA_permease PF00324 81 - 469 4.5e-28 Amino acid permease
AA_permease_C PF13906 514 - 563 6.9e-19 C-terminus of AA_permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34960
fragaria_vesca FvH4_3g13060
malus_domestica MD05G1245200.v1.1 MD05G1245300.v1.1
prunus_persica Prupe.4G118600_v2.0.a1 Prupe.4G118700_v2.0.a1
pyrus_communis pycom10g19060
rosa_chinensis RchiOBHm_Chr5g0021251
rosa_laevigata RLG00000032599
rosa_multiflora Rmu_sc0004847.1_g000002
rosa_roxburghii Rroxscaffold_1G00057250
rosa_rugosa Rorug05G0066000
rosa_samantha Rh5AG154700 Rh5BG154200 Rh5CG167800 Rh5DG154800
rosa_wichuraiana Rw5G013790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1628
Acc36I ACCTGC 1 cut(s) 441
AccB7I CCANNNNNTGG 3 cut(s) 413, 525, 1449
AciI CCGC 3 cut(s) 436, 574, 702
AclI AACGTT 1 cut(s) 220
AclWI GGATC 7 cut(s) 153, 246, 268, 397, 427, 922, 1612
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 4 cut(s) 333, 615, 888, 1404
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 2 cut(s) 1049, 1645
AfiI CCNNNNNNNGG 6 cut(s) 413, 525, 1184, 1276, 1413, 1449
AgsI TTSAA 8 cut(s) 92, 142, 553, 688, 1022, 1224, 1248, 1372
AjnI CCWGG 3 cut(s) 230, 609, 1050
Alw21I GWGCWC 2 cut(s) 1069, 1286
Alw26I GTCTC 3 cut(s) 173, 444, 885
AlwI GGATC 7 cut(s) 153, 246, 268, 397, 427, 922, 1612
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 4 cut(s) 791, 1041, 1678, 1701
ApeKI GCWGC 5 cut(s) 509, 644, 812, 815, 1001
ApoI RAATTY 1 cut(s) 389
AspLEI GCGC 1 cut(s) 1144
AspS9I GGNCC 5 cut(s) 320, 613, 791, 1041, 1702
AsuHPI GGTGA 6 cut(s) 35, 220, 1291, 1342, 1402, 1521
AvaII GGWCC 2 cut(s) 320, 613
BauI CACGAG 1 cut(s) 1137
BbsI GAAGAC 2 cut(s) 367, 796
Bbv12I GWGCWC 2 cut(s) 1069, 1286
BbvI GCAGC 5 cut(s) 521, 631, 802, 824, 1013
BccI CCATC 6 cut(s) 48, 892, 943, 1182, 1300, 1576
BcgI CGANNNNNNTGC 2 cut(s) 889, 923
BciT130I CCWGG 3 cut(s) 232, 611, 1052
BclI TGATCA 3 cut(s) 310, 660, 1392
BcoDI GTCTC 3 cut(s) 173, 444, 885
BfaI CTAG 4 cut(s) 446, 1169, 1322, 1376
BfmI CTRYAG 2 cut(s) 639, 1410
BfuAI ACCTGC 1 cut(s) 441
BglI GCCNNNNNGGC 2 cut(s) 790, 863
BisI GCNGC 5 cut(s) 510, 645, 813, 816, 1002
BlsI GCNGC 5 cut(s) 511, 646, 814, 817, 1003
Bme1390I CCNGG 3 cut(s) 232, 611, 1052
Bme18I GGWCC 2 cut(s) 320, 613
BmgT120I GGNCC 5 cut(s) 320, 613, 791, 1041, 1702
BmiI GGNNCC 4 cut(s) 615, 1189, 1548, 1557
BmrFI CCNGG 3 cut(s) 232, 611, 1052
BmrI ACTGGG 3 cut(s) 303, 401, 1438
BmsI GCATC 5 cut(s) 160, 288, 707, 960, 1644
BmuI ACTGGG 3 cut(s) 303, 401, 1438
BoxI GACNNNNGTC 1 cut(s) 1346
BpiI GAAGAC 2 cut(s) 367, 796
BpmI CTGGAG 3 cut(s) 70, 118, 1744
BpuEI CTTGAG 2 cut(s) 509, 1055
BsaJI CCNNGG 2 cut(s) 1157, 1559
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 945, 975
Bsc4I CCNNNNNNNGG 6 cut(s) 413, 525, 1184, 1276, 1413, 1449
Bse1I ACTGG 5 cut(s) 53, 298, 407, 1433, 1557
Bse3DI GCAATG 4 cut(s) 369, 852, 1233, 1506
BseBI CCWGG 3 cut(s) 232, 611, 1052
BseDI CCNNGG 2 cut(s) 1157, 1559
BseGI GGATG 5 cut(s) 698, 884, 1174, 1261, 1568
BseLI CCNNNNNNNGG 6 cut(s) 413, 525, 1184, 1276, 1413, 1449
BseMI GCAATG 4 cut(s) 369, 852, 1233, 1506
BseNI ACTGG 5 cut(s) 53, 298, 407, 1433, 1557
BseXI GCAGC 5 cut(s) 521, 631, 802, 824, 1013
BsgI GTGCAG 2 cut(s) 294, 528
BshFI GGCC 4 cut(s) 793, 1043, 1680, 1703
BsiHKAI GWGCWC 2 cut(s) 1069, 1286
BslFI GGGAC 2 cut(s) 543, 1429
BslI CCNNNNNNNGG 6 cut(s) 413, 525, 1184, 1276, 1413, 1449
BsmAI GTCTC 3 cut(s) 173, 444, 885
BsmFI GGGAC 2 cut(s) 543, 1429
BsnI GGCC 4 cut(s) 793, 1043, 1680, 1703
Bsp1286I GDGCHC 2 cut(s) 1069, 1286
Bsp19I CCATGG 1 cut(s) 1157
BspACI CCGC 3 cut(s) 436, 574, 702
BspANI GGCC 4 cut(s) 793, 1043, 1680, 1703
BspHI TCATGA 1 cut(s) 1299
BspLI GGNNCC 4 cut(s) 615, 1189, 1548, 1557
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 7 cut(s) 153, 246, 268, 397, 427, 922, 1612
BsrDI GCAATG 4 cut(s) 369, 852, 1233, 1506
BsrI ACTGG 5 cut(s) 53, 298, 407, 1433, 1557
BssECI CCNNGG 2 cut(s) 1157, 1559
BssSI CACGAG 1 cut(s) 1137
BssT1I CCWWGG 2 cut(s) 1157, 1559
Bst2BI CACGAG 1 cut(s) 1137
Bst2UI CCWGG 3 cut(s) 232, 611, 1052
Bst4CI ACNGT 4 cut(s) 184, 934, 1087, 1471
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 1157
BstEII GGTNACC 1 cut(s) 1527
BstF5I GGATG 5 cut(s) 698, 884, 1174, 1261, 1568
BstHHI GCGC 1 cut(s) 1144
BstMAI GTCTC 3 cut(s) 173, 444, 885
BstMWI GCNNNNNNNGC 8 cut(s) 295, 323, 442, 644, 790, 863, 1064, 1726
BstNI CCWGG 3 cut(s) 232, 611, 1052
BstPAI GACNNNNGTC 1 cut(s) 1346
BstPI GGTNACC 1 cut(s) 1527
BstSCI CCNGG 3 cut(s) 230, 609, 1050
BstSFI CTRYAG 2 cut(s) 639, 1410
BstV1I GCAGC 5 cut(s) 521, 631, 802, 824, 1013
BstV2I GAAGAC 2 cut(s) 367, 796
BstX2I RGATCY 4 cut(s) 238, 402, 419, 1604
BstXI CCANNNNNNTGG 2 cut(s) 1051, 1539
BstYI RGATCY 4 cut(s) 238, 402, 419, 1604
BsuRI GGCC 4 cut(s) 793, 1043, 1680, 1703
BtgI CCRYGG 1 cut(s) 1157
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 5 cut(s) 698, 884, 1174, 1261, 1568
BtsIMutI CAGTG 6 cut(s) 384, 414, 591, 1083, 1512, 1550
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 1299
CfoI GCGC 1 cut(s) 1144
Cfr13I GGNCC 5 cut(s) 320, 613, 791, 1041, 1702
CsiI ACCWGGT 2 cut(s) 230, 1050
Csp6I GTAC 2 cut(s) 1048, 1644
CspCI CAANNNNNGTGG 2 cut(s) 1350, 1385
CviQI GTAC 2 cut(s) 1048, 1644
DdeI CTNAG 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 1157, 1559
Eco47I GGWCC 2 cut(s) 320, 613
Eco57I CTGAAG 4 cut(s) 333, 615, 888, 1404
Eco91I GGTNACC 1 cut(s) 1527
EcoO65I GGTNACC 1 cut(s) 1527
EcoRII CCWGG 3 cut(s) 230, 609, 1050
EcoT14I CCWWGG 2 cut(s) 1157, 1559
ErhI CCWWGG 2 cut(s) 1157, 1559
FaqI GGGAC 2 cut(s) 543, 1429
FbaI TGATCA 3 cut(s) 310, 660, 1392
Fnu4HI GCNGC 5 cut(s) 510, 645, 813, 816, 1002
FokI GGATG 5 cut(s) 685, 871, 1161, 1268, 1555
Fsp4HI GCNGC 5 cut(s) 510, 645, 813, 816, 1002
FspBI CTAG 4 cut(s) 446, 1169, 1322, 1376
GlaI GCGC 1 cut(s) 1143
GluI GCNGC 5 cut(s) 510, 645, 813, 816, 1002
GsuI CTGGAG 3 cut(s) 70, 118, 1744
HaeIII GGCC 4 cut(s) 793, 1043, 1680, 1703
HhaI GCGC 1 cut(s) 1144
Hin6I GCGC 1 cut(s) 1142
HinP1I GCGC 1 cut(s) 1142
HindIII AAGCTT 1 cut(s) 1249
HinfI GANTC 5 cut(s) 83, 150, 553, 1150, 1724
HphI GGTGA 6 cut(s) 35, 220, 1291, 1342, 1402, 1521
Hpy166II GTNNAC 2 cut(s) 826, 1384
Hpy188I TCNGA 3 cut(s) 10, 195, 260
Hpy8I GTNNAC 2 cut(s) 826, 1384
HpyAV CCTTC 3 cut(s) 590, 1691, 1762
HpyCH4III ACNGT 4 cut(s) 184, 934, 1087, 1471
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 8 cut(s) 295, 323, 442, 644, 790, 863, 1064, 1726
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 220
HspAI GCGC 1 cut(s) 1142
Ksp22I TGATCA 3 cut(s) 310, 660, 1392
LmnI GCTCC 3 cut(s) 57, 187, 998
Lsp1109I GCAGC 5 cut(s) 521, 631, 802, 824, 1013
LweI GCATC 5 cut(s) 160, 288, 707, 960, 1644
MabI ACCWGGT 2 cut(s) 230, 1050
MaeI CTAG 4 cut(s) 446, 1169, 1322, 1376
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 5 cut(s) 120, 1339, 1348, 1465, 1527
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 4 cut(s) 238, 402, 419, 1604
MhlI GDGCHC 2 cut(s) 1069, 1286
MluCI AATT 6 cut(s) 18, 389, 651, 688, 819, 1476
MlyI GAGTC 2 cut(s) 92, 144
MmeI TCCRAC 2 cut(s) 588, 1430
MnlI CCTC 8 cut(s) 4, 236, 571, 688, 833, 1417, 1518, 1527
MseI TTAA 1 cut(s) 1436
MslI CAYNNNNRTG 2 cut(s) 284, 1304
MspA1I CMGCKG 1 cut(s) 815
MspR9I CCNGG 3 cut(s) 232, 611, 1052
MunI CAATTG 1 cut(s) 819
MvaI CCWGG 3 cut(s) 232, 611, 1052
MwoI GCNNNNNNNGC 8 cut(s) 295, 323, 442, 644, 790, 863, 1064, 1726
NcoI CCATGG 1 cut(s) 1157
NlaIV GGNNCC 4 cut(s) 615, 1189, 1548, 1557
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 5 cut(s) 120, 1339, 1348, 1465, 1527
PagI TCATGA 1 cut(s) 1299
PfeI GAWTC 3 cut(s) 553, 1150, 1724
PflMI CCANNNNNTGG 3 cut(s) 413, 525, 1449
PfoI TCCNGGA 1 cut(s) 609
PkrI GCNGC 5 cut(s) 511, 646, 814, 817, 1003
PleI GAGTC 2 cut(s) 91, 144
PpsI GAGTC 2 cut(s) 91, 144
PshAI GACNNNNGTC 1 cut(s) 1346
PsiI TTATAA 1 cut(s) 1628
Psp1406I AACGTT 1 cut(s) 220
Psp6I CCWGG 3 cut(s) 230, 609, 1050
PspEI GGTNACC 1 cut(s) 1527
PspGI CCWGG 3 cut(s) 230, 609, 1050
PspN4I GGNNCC 4 cut(s) 615, 1189, 1548, 1557
PspPI GGNCC 5 cut(s) 320, 613, 791, 1041, 1702
PsrI GAACNNNNNNTAC 2 cut(s) 1455, 1487
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 4 cut(s) 238, 402, 419, 1604
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 1049, 1645
RsaNI GTAC 2 cut(s) 1048, 1644
RseI CAYNNNNRTG 2 cut(s) 284, 1304
SaqAI TTAA 1 cut(s) 1436
SatI GCNGC 5 cut(s) 510, 645, 813, 816, 1002
Sau96I GGNCC 5 cut(s) 320, 613, 791, 1041, 1702
SchI GAGTC 2 cut(s) 92, 144
ScrFI CCNGG 3 cut(s) 232, 611, 1052
SduI GDGCHC 2 cut(s) 1069, 1286
SexAI ACCWGGT 2 cut(s) 230, 1050
SfaNI GCATC 5 cut(s) 160, 288, 707, 960, 1644
SfcI CTRYAG 2 cut(s) 639, 1410
SinI GGWCC 2 cut(s) 320, 613
SmiMI CAYNNNNRTG 2 cut(s) 284, 1304
SmlI CTYRAG 2 cut(s) 488, 1070
SmoI CTYRAG 2 cut(s) 488, 1070
Sse9I AATT 6 cut(s) 18, 389, 651, 688, 819, 1476
SsiI CCGC 3 cut(s) 436, 574, 702
SspI AATATT 2 cut(s) 723, 1591
SspMI CTAG 4 cut(s) 446, 1169, 1322, 1376
StyD4I CCNGG 3 cut(s) 230, 609, 1050
StyI CCWWGG 2 cut(s) 1157, 1559
TaaI ACNGT 4 cut(s) 184, 934, 1087, 1471
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 148, 923
TasI AATT 6 cut(s) 18, 389, 651, 688, 819, 1476
TatI WGTACW 1 cut(s) 1643
TfiI GAWTC 3 cut(s) 553, 1150, 1724
Tru1I TTAA 1 cut(s) 1436
Tru9I TTAA 1 cut(s) 1436
TscAI CASTG 6 cut(s) 391, 414, 598, 1090, 1512, 1557
TseFI GTSAC 5 cut(s) 120, 1339, 1348, 1465, 1527
TseI GCWGC 5 cut(s) 509, 644, 812, 815, 1001
Tsp45I GTSAC 5 cut(s) 120, 1339, 1348, 1465, 1527
TspDTI ATGAA 5 cut(s) 230, 454, 785, 1288, 1673
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 6 cut(s) 391, 414, 598, 1090, 1512, 1557
Van91I CCANNNNNTGG 3 cut(s) 413, 525, 1449
VpaK11BI GGWCC 2 cut(s) 320, 613
XapI RAATTY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 4 cut(s) 45, 314, 1090, 1557
XspI CTAG 4 cut(s) 446, 1169, 1322, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.