Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013891

Physical Location & Seq

Genomic Coordinates Reverse (-)

5702239 .. 5702567

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATTCAGATCCGATCGGAGACACCTTGGAGGTGATGGAGGTGCCCGGGGCAGCTGGTTGTCTTTGGTTCTTGAGGGCAAAGCATCTGGTCTTCGATGGTGGAGGCAGTAATTTGTCTCGGGTTGTTGACATTGGGCTTGATCTGTGGGCCACCGGCGGTGGAGGCGGGACAGAAGCTGGCATGTATGGCGGCGGCGGCTTGCTTGCTTTTTCATCTAGCTTTTGCCCTAGGTGTTATGATTGGGCTGCTAGGCTTTGGGCTTTCATTCGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

92

Amino Acids

9.69

Weight (kDa)

4.56

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34960
fragaria_vesca	FvH4_3g13060
malus_domestica	MD05G1245200.v1.1 MD05G1245300.v1.1
prunus_persica	Prupe.4G118600_v2.0.a1 Prupe.4G118700_v2.0.a1
pyrus_communis	pycom10g19060
rosa_chinensis	RchiOBHm_Chr5g0021251
rosa_laevigata	RLG00000032599
rosa_multiflora	Rmu_sc0004847.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057250
rosa_rugosa	Rorug05G0066000
rosa_samantha	Rh5AG154700 Rh5BG154200 Rh5CG167800 Rh5DG154800
rosa_wichuraiana	Rw5G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	5 cut(s)	159, 168, 192, 195, 198
AclWI	GGATC	1 cut(s)	5
AluBI	AGCT	3 cut(s)	56, 179, 222
AluI	AGCT	3 cut(s)	56, 179, 222
Alw26I	GTCTC	2 cut(s)	15, 123
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	47, 120
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	53, 248
AspA2I	CCTAGG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	47, 120
AvrII	CCTAGG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	65, 235
BccI	CCATC	2 cut(s)	31, 92
BcnI	CCSGG	2 cut(s)	48, 49
BcoDI	GTCTC	2 cut(s)	15, 123
BfaI	CTAG	3 cut(s)	219, 231, 252
BisI	GCNGC	5 cut(s)	54, 193, 196, 199, 249
BlnI	CCTAGG	1 cut(s)	230
BlsI	GCNGC	5 cut(s)	55, 194, 197, 200, 250
Bme1390I	CCNGG	2 cut(s)	48, 49
BmeT110I	CYCGRG	2 cut(s)	47, 120
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	48, 49
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	48, 49
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	27, 47, 48, 230
Bse118I	RCCGGY	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	4 cut(s)	27, 47, 48, 230
BseJI	GATNNNNATC	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	65, 235
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	47, 120
BsiSI	CCGG	2 cut(s)	48, 156
BslFI	GGGAC	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	15, 123
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	47, 120
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	10, 15, 142
BspACI	CCGC	5 cut(s)	159, 168, 192, 195, 198
BspANI	GGCC	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	4 cut(s)	27, 47, 48, 230
BssMI	GATC	3 cut(s)	10, 15, 142
BssT1I	CCWWGG	2 cut(s)	27, 230
BstC8I	GCNNGC	3 cut(s)	181, 203, 207
BstKTI	GATC	3 cut(s)	13, 18, 145
BstMAI	GTCTC	2 cut(s)	15, 123
BstMBI	GATC	3 cut(s)	10, 15, 142
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 189, 198
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	46, 47
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	65, 235
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	181, 203, 207
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	47
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	9 cut(s)	56, 139, 152, 179, 201, 222, 248, 256, 263
CviKI_1	RGCY	9 cut(s)	56, 139, 152, 179, 201, 222, 248, 256, 263
DpnI	GATC	3 cut(s)	12, 17, 144
DpnII	GATC	3 cut(s)	10, 15, 142
Eco130I	CCWWGG	2 cut(s)	27, 230
Eco88I	CYCGRG	2 cut(s)	47, 120
EcoT14I	CCWWGG	2 cut(s)	27, 230
ErhI	CCWWGG	2 cut(s)	27, 230
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	185, 189, 240
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	5 cut(s)	54, 193, 196, 199, 249
Fsp4HI	GCNGC	5 cut(s)	54, 193, 196, 199, 249
FspBI	CTAG	3 cut(s)	219, 231, 252
GluI	GCNGC	5 cut(s)	54, 193, 196, 199, 249
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	48, 156
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	48, 156
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	10, 15, 20
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 189, 198
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	10, 15, 142
LpnPI	CCDG	5 cut(s)	42, 61, 74, 165, 169
Lsp1109I	GCAGC	2 cut(s)	65, 235
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	3 cut(s)	219, 231, 252
MalI	GATC	3 cut(s)	12, 17, 144
MboI	GATC	3 cut(s)	10, 15, 142
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	5 cut(s)	25, 34, 69, 98, 158
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	48, 156
MspR9I	CCNGG	2 cut(s)	48, 49
MwoI	GCNNNNNNNGC	3 cut(s)	165, 189, 198
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	3 cut(s)	10, 15, 142
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	5 cut(s)	55, 194, 197, 200, 250
Ple19I	CGATCG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	56
SatI	GCNGC	5 cut(s)	54, 193, 196, 199, 249
Sau3AI	GATC	3 cut(s)	10, 15, 142
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	48, 49
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	29, 36, 45, 58, 181, 224, 236
SfaNI	GCATC	1 cut(s)	94
SgrAI	CRCCGGYG	1 cut(s)	155
SmaI	CCCGGG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	5 cut(s)	159, 168, 192, 195, 198
SspMI	CTAG	3 cut(s)	219, 231, 252
StyD4I	CCNGG	2 cut(s)	46, 47
StyI	CCWWGG	2 cut(s)	27, 230
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	112
TauI	GCSGC	3 cut(s)	195, 198, 201
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	53, 248
TspDTI	ATGAA	2 cut(s)	204, 256
TspMI	CCCGGG	1 cut(s)	47
XceI	RCATGY	1 cut(s)	187
XmaI	CCCGGG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	230
XspI	CTAG	3 cut(s)	219, 231, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.