Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013891

Physical Location & Seq

Genomic Coordinates Forward (+)

6414675 .. 6417550

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGGTTCCATGGGAGTAGCGGGTGAAGAGGTTCAGCCAAGAAGTTACTGGAGATGGAGCAAACAAGATTTCCTACCAGAAGAATCCTTTCAAAGTTGGAGCACATATCGGACCGCCCTGTCACAAACAGGCTACAGGTTCAAGAACCGTCTCATAAGCAGATCAGATGATAACAATGAGATTGGGGAACTTCCAAAGCGAAGTGAAAATGACATGAAGCGTTGCCTCACATGGTGGGATCTCATCTGGTTTGGATTTGGTTCAGTAATTGGTGCAGGCATCTTTGTGCTTACTGGGCAAGAAACTCATGACCATGCTGGACCAGCTATTGTCTTGTCCTATGTTGCTTCCGGTGTCTCGGCAATGCTCTCTGTCTTCTGCTACACAGAATTTTCAGTGGAAGTCCCTGTGGCAGGTGGAGCTTTTGCTTACCTGCGGATAGAATTAGGAGACTTCATAGCATTCATAACAGCAGGAAACATACTTCTTGAGGGCTTTGTCGGAAGTGCAGCAGTTGCTAGATCATGGACTTCTTACTTCACATCACTCTTGAATCGTCCCTCCAACTCATTACGCATCCATACAAATCTGACGGAGGGGTTCAATCTACTTGACCCAATAGCTGTTGCTGTTCTGACCATAGCTGCAACAATTGCAATGATCAGCACAAGGAAGACCTCTTACTTAAACTGGATAGCATCTATAGTCAATAATGTTGTAATTCTGTTTGTGATAATTGCAGCATTTATCCATGCCAACCCATCAAATATGAAACCCTTTTTTCCGTTTGGGGCTAAAGGAGTCTTTCAAGCAGCTGCAATTGTTTACTTTGCTTATGGAGGATTTGACAATATCGCCACCATGGCTGAAGAAACCAAAAATCCATCCAGAGACATACCGATAGGATTAATTGGATCAATGTCAATCATCACTGTCATATATTGTTTAATGGCAGTTTCACTGCCTATGATGCAGAAATACACAGATATAGACCCAAATGCAGCCTACTCTGTAGCATTTCAAAGTGTGGGCATGACATGGGCCAAGTACCTGGTAGCCCTAGGTGCCCTGAAGGGAATGACCACTGTTCTTCTGGTCGGGACACTTGGACAGGCACGGTATATCACTCATATTGCACGAGCCCACATGATTCCACCATGGTTTGCTCTTGTCCATCCAAAGACAGGAACCCCCATAAATGCTACACTCTTGATTGTCATTCCAAGTGGTTGTTTGGCTTTGTTTTCGAGCTTGAATGTCTTGGCAGGTCTGTTATCAGTGAGCACACTCTTTATCTTCATGATGATGGCTGTCGCACTTCTAGTGAGGAGGGACTTCGGCTTACTGGGGACTAAATCCCAATGGTTGGGTTGGTTATGTCGTGACAGTTCCTCTCTGGTTCTTTGGGACTTTGGCAATGGCAGTATTTTTACCCCAACAGAGGTCACCAAAAGTTTGGGGGGTTCCACTGGTTCCTTGGTTGCCATCCTTGTCAATTGCAACAAACATTTTTCTTATGGGCTCTCTGGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

512

Amino Acids

55.63

Weight (kDa)

8.42

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34960
fragaria_vesca	FvH4_3g13060
malus_domestica	MD05G1245200.v1.1 MD05G1245300.v1.1
prunus_persica	Prupe.4G118600_v2.0.a1 Prupe.4G118700_v2.0.a1
pyrus_communis	pycom10g19060
rosa_chinensis	RchiOBHm_Chr5g0021251
rosa_laevigata	RLG00000032599
rosa_multiflora	Rmu_sc0004847.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057250
rosa_rugosa	Rorug05G0066000
rosa_samantha	Rh5AG154700 Rh5BG154200 Rh5CG167800 Rh5DG154800
rosa_wichuraiana	Rw5G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
AasI	GACNNNNNNGTC	1 cut(s)	118
Acc36I	ACCTGC	3 cut(s)	404, 441, 1256
AccB1I	GGYRCC	1 cut(s)	1064
AccB7I	CCANNNNNTGG	1 cut(s)	1366
AciI	CCGC	3 cut(s)	20, 114, 436
AclWI	GGATC	2 cut(s)	246, 922
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	2 cut(s)	888, 1091
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	1049
AfiI	CCNNNNNNNGG	4 cut(s)	413, 1184, 1366, 1441
AgsI	TTSAA	7 cut(s)	92, 142, 553, 604, 809, 1022, 1255
AjnI	CCWGG	1 cut(s)	1050
AluBI	AGCT	6 cut(s)	326, 422, 623, 644, 815, 1251
AluI	AGCT	6 cut(s)	326, 422, 623, 644, 815, 1251
Alw21I	GWGCWC	2 cut(s)	104, 1286
Alw26I	GTCTC	4 cut(s)	155, 361, 444, 885
AlwI	GGATC	2 cut(s)	246, 922
AoxI	GGCC	1 cut(s)	1041
ApeKI	GCWGC	6 cut(s)	509, 644, 740, 812, 815, 1001
ApoI	RAATTY	1 cut(s)	389
AseI	ATTAAT	1 cut(s)	908
Asp700I	GAANNNNTTC	2 cut(s)	30, 87
AspA2I	CCTAGG	1 cut(s)	1060
AspS9I	GGNCC	3 cut(s)	111, 320, 1041
AsuHPI	GGTGA	2 cut(s)	35, 1438
AvaII	GGWCC	2 cut(s)	111, 320
AvrII	CCTAGG	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	1069
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	2 cut(s)	1144, 1524
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BauI	CACGAG	1 cut(s)	1137
BbsI	GAAGAC	2 cut(s)	367, 680
Bbv12I	GWGCWC	2 cut(s)	104, 1286
BbvI	GCAGC	6 cut(s)	521, 631, 752, 802, 824, 1013
BccI	CCATC	6 cut(s)	48, 769, 892, 1182, 1300, 1493
BciT130I	CCWGG	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	4 cut(s)	155, 361, 444, 885
BfaI	CTAG	3 cut(s)	519, 1061, 1322
BfmI	CTRYAG	3 cut(s)	133, 702, 1011
BfuAI	ACCTGC	3 cut(s)	404, 441, 1256
BglI	GCCNNNNNGGC	1 cut(s)	863
BisI	GCNGC	6 cut(s)	510, 645, 741, 813, 816, 1002
BlnI	CCTAGG	1 cut(s)	1060
BlsI	GCNGC	6 cut(s)	511, 646, 742, 814, 817, 1003
Bme1390I	CCNGG	1 cut(s)	1052
Bme18I	GGWCC	2 cut(s)	111, 320
BmgT120I	GGNCC	3 cut(s)	111, 320, 1041
BmiI	GGNNCC	5 cut(s)	7, 1066, 1189, 1465, 1474
BmrFI	CCNGG	1 cut(s)	1052
BmrI	ACTGGG	2 cut(s)	303, 1355
BmsI	GCATC	4 cut(s)	288, 585, 707, 960
BmuI	ACTGGG	2 cut(s)	303, 1355
BpiI	GAAGAC	2 cut(s)	367, 680
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	5 cut(s)	9, 861, 1060, 1157, 1476
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 1184, 1366, 1441
Bse1I	ACTGG	5 cut(s)	53, 298, 695, 1350, 1474
Bse3DI	GCAATG	3 cut(s)	369, 663, 1423
BseBI	CCWGG	1 cut(s)	1052
BseDI	CCNNGG	5 cut(s)	9, 861, 1060, 1157, 1476
BseGI	GGATG	4 cut(s)	576, 884, 1174, 1485
BseLI	CCNNNNNNNGG	4 cut(s)	413, 1184, 1366, 1441
BseMI	GCAATG	3 cut(s)	369, 663, 1423
BseNI	ACTGG	5 cut(s)	53, 298, 695, 1350, 1474
BseRI	GAGGAG	1 cut(s)	1342
BseSI	GKGCMC	1 cut(s)	1069
BseXI	GCAGC	6 cut(s)	521, 631, 752, 802, 824, 1013
BsgI	GTGCAG	2 cut(s)	294, 528
BshFI	GGCC	1 cut(s)	1043
BshNI	GGYRCC	1 cut(s)	1064
BsiHKAI	GWGCWC	2 cut(s)	104, 1286
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	6 cut(s)	389, 543, 1114, 1346, 1363, 1421
BslI	CCNNNNNNNGG	4 cut(s)	413, 1184, 1366, 1441
BsmAI	GTCTC	4 cut(s)	155, 361, 444, 885
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	6 cut(s)	389, 543, 1114, 1346, 1363, 1421
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	1043
Bsp1286I	GDGCHC	5 cut(s)	104, 1069, 1144, 1286, 1524
Bsp143I	GATC	5 cut(s)	161, 238, 521, 660, 914
Bsp19I	CCATGG	3 cut(s)	9, 861, 1157
BspACI	CCGC	3 cut(s)	20, 114, 436
BspANI	GGCC	1 cut(s)	1043
BspHI	TCATGA	2 cut(s)	307, 1299
BspLI	GGNNCC	5 cut(s)	7, 1066, 1189, 1465, 1474
BspMI	ACCTGC	3 cut(s)	404, 441, 1256
BspPI	GGATC	2 cut(s)	246, 922
BspT107I	GGYRCC	1 cut(s)	1064
BsrDI	GCAATG	3 cut(s)	369, 663, 1423
BsrI	ACTGG	5 cut(s)	53, 298, 695, 1350, 1474
BssECI	CCNNGG	5 cut(s)	9, 861, 1060, 1157, 1476
BssMI	GATC	5 cut(s)	161, 238, 521, 660, 914
BssSI	CACGAG	1 cut(s)	1137
BssT1I	CCWWGG	5 cut(s)	9, 861, 1060, 1157, 1476
Bst2BI	CACGAG	1 cut(s)	1137
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	5 cut(s)	149, 934, 1087, 1119, 1388
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	515, 653
BstC8I	GCNNGC	1 cut(s)	277
BstDSI	CCRYGG	3 cut(s)	9, 861, 1157
BstEII	GGTNACC	1 cut(s)	1444
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	4 cut(s)	576, 884, 1174, 1485
BstKTI	GATC	5 cut(s)	164, 241, 524, 663, 917
BstMAI	GTCTC	4 cut(s)	155, 361, 444, 885
BstMBI	GATC	5 cut(s)	161, 238, 521, 660, 914
BstMWI	GCNNNNNNNGC	8 cut(s)	295, 323, 419, 515, 653, 863, 970, 1064
BstNI	CCWGG	1 cut(s)	1052
BstPI	GGTNACC	1 cut(s)	1444
BstSCI	CCNGG	1 cut(s)	1050
BstSFI	CTRYAG	3 cut(s)	133, 702, 1011
BstSLI	GKGCMC	1 cut(s)	1069
BstV1I	GCAGC	6 cut(s)	521, 631, 752, 802, 824, 1013
BstV2I	GAAGAC	2 cut(s)	367, 680
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	2 cut(s)	1051, 1456
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	1043
BtgI	CCRYGG	3 cut(s)	9, 861, 1157
BtsCI	GGATG	4 cut(s)	576, 884, 1174, 1485
BtsI	GCAGTG	1 cut(s)	959
BtsIMutI	CAGTG	6 cut(s)	402, 930, 959, 1083, 1284, 1467
BveI	ACCTGC	3 cut(s)	404, 441, 1256
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	2 cut(s)	307, 1299
Cfr13I	GGNCC	3 cut(s)	111, 320, 1041
CpoI	CGGWCCG	1 cut(s)	111
CsiI	ACCWGGT	1 cut(s)	1050
Csp6I	GTAC	1 cut(s)	1048
CspI	CGGWCCG	1 cut(s)	111
CviQI	GTAC	1 cut(s)	1048
DpnI	GATC	5 cut(s)	163, 240, 523, 662, 916
DpnII	GATC	5 cut(s)	161, 238, 521, 660, 914
DraIII	CACNNNGTG	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	5 cut(s)	9, 861, 1060, 1157, 1476
Eco24I	GRGCYC	2 cut(s)	1144, 1524
Eco47I	GGWCC	2 cut(s)	111, 320
Eco57I	CTGAAG	2 cut(s)	888, 1091
Eco91I	GGTNACC	1 cut(s)	1444
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO65I	GGTNACC	1 cut(s)	1444
EcoRII	CCWGG	1 cut(s)	1050
EcoT14I	CCWWGG	5 cut(s)	9, 861, 1060, 1157, 1476
EcoT38I	GRGCYC	2 cut(s)	1144, 1524
ErhI	CCWWGG	5 cut(s)	9, 861, 1060, 1157, 1476
Esp3I	CGTCTC	1 cut(s)	155
FaqI	GGGAC	6 cut(s)	389, 543, 1114, 1346, 1363, 1421
FauI	CCCGC	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	6 cut(s)	510, 645, 741, 813, 816, 1002
FokI	GGATG	4 cut(s)	563, 871, 1161, 1472
FriOI	GRGCYC	2 cut(s)	1144, 1524
Fsp4HI	GCNGC	6 cut(s)	510, 645, 741, 813, 816, 1002
FspBI	CTAG	3 cut(s)	519, 1061, 1322
GluI	GCNGC	6 cut(s)	510, 645, 741, 813, 816, 1002
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	1043
HapII	CCGG	1 cut(s)	351
HinfI	GANTC	4 cut(s)	83, 553, 801, 1150
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	35, 1438
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	5 cut(s)	111, 166, 503, 591, 636
Hpy188III	TCNNGA	9 cut(s)	142, 308, 488, 550, 888, 1099, 1210, 1300, 1382
Hpy8I	GTNNAC	1 cut(s)	826
HpyAV	CCTTC	1 cut(s)	1066
HpyCH4III	ACNGT	5 cut(s)	149, 934, 1087, 1119, 1388
HpyF10VI	GCNNNNNNNGC	8 cut(s)	295, 323, 419, 515, 653, 863, 970, 1064
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	161, 238, 521, 660, 914
LmnI	GCTCC	3 cut(s)	57, 99, 419
Lsp1109I	GCAGC	6 cut(s)	521, 631, 752, 802, 824, 1013
LweI	GCATC	4 cut(s)	288, 585, 707, 960
MabI	ACCWGGT	1 cut(s)	1050
MaeI	CTAG	3 cut(s)	519, 1061, 1322
MaeIII	GTNAC	4 cut(s)	44, 120, 1382, 1444
MalI	GATC	5 cut(s)	163, 240, 523, 662, 916
MboI	GATC	5 cut(s)	161, 238, 521, 660, 914
MboII	GAAGA	7 cut(s)	38, 92, 367, 685, 881, 1082, 1288
MfeI	CAATTG	3 cut(s)	651, 819, 1495
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	5 cut(s)	104, 1069, 1144, 1286, 1524
MluCI	AATT	9 cut(s)	267, 389, 443, 651, 720, 735, 819, 909, 1495
MlyI	GAGTC	1 cut(s)	810
MmeI	TCCRAC	3 cut(s)	77, 481, 588
MroXI	GAANNNNTTC	2 cut(s)	30, 87
MseI	TTAA	3 cut(s)	686, 908, 947
MslI	CAYNNNNRTG	3 cut(s)	284, 312, 1304
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	1052
MunI	CAATTG	3 cut(s)	651, 819, 1495
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	8 cut(s)	295, 323, 419, 515, 653, 863, 970, 1064
NcoI	CCATGG	3 cut(s)	9, 861, 1157
NdeII	GATC	5 cut(s)	161, 238, 521, 660, 914
NlaIV	GGNNCC	5 cut(s)	7, 1066, 1189, 1465, 1474
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	3 cut(s)	120, 1382, 1444
PagI	TCATGA	2 cut(s)	307, 1299
PaqCI	CACCTGC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	30, 87
PfeI	GAWTC	3 cut(s)	83, 553, 1150
PflMI	CCANNNNNTGG	1 cut(s)	1366
PkrI	GCNGC	6 cut(s)	511, 646, 742, 814, 817, 1003
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	1050
PspEI	GGTNACC	1 cut(s)	1444
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	5 cut(s)	7, 1066, 1189, 1465, 1474
PspPI	GGNCC	3 cut(s)	111, 320, 1041
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	1049
RsaNI	GTAC	1 cut(s)	1048
RseI	CAYNNNNRTG	3 cut(s)	284, 312, 1304
Rsr2I	CGGWCCG	1 cut(s)	111
RsrII	CGGWCCG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	686, 908, 947
SatI	GCNGC	6 cut(s)	510, 645, 741, 813, 816, 1002
Sau3AI	GATC	5 cut(s)	161, 238, 521, 660, 914
Sau96I	GGNCC	3 cut(s)	111, 320, 1041
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	1 cut(s)	1052
SduI	GDGCHC	5 cut(s)	104, 1069, 1144, 1286, 1524
SexAI	ACCWGGT	1 cut(s)	1050
SfaNI	GCATC	4 cut(s)	288, 585, 707, 960
SfcI	CTRYAG	3 cut(s)	133, 702, 1011
SinI	GGWCC	2 cut(s)	111, 320
SmiMI	CAYNNNNRTG	3 cut(s)	284, 312, 1304
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	9 cut(s)	267, 389, 443, 651, 720, 735, 819, 909, 1495
SsiI	CCGC	3 cut(s)	20, 114, 436
SspMI	CTAG	3 cut(s)	519, 1061, 1322
StyD4I	CCNGG	1 cut(s)	1050
StyI	CCWWGG	5 cut(s)	9, 861, 1060, 1157, 1476
TaaI	ACNGT	5 cut(s)	149, 934, 1087, 1119, 1388
TaqI	TCGA	1 cut(s)	1247
TasI	AATT	9 cut(s)	267, 389, 443, 651, 720, 735, 819, 909, 1495
TfiI	GAWTC	3 cut(s)	83, 553, 1150
Tru1I	TTAA	3 cut(s)	686, 908, 947
Tru9I	TTAA	3 cut(s)	686, 908, 947
TscAI	CASTG	6 cut(s)	402, 937, 966, 1090, 1284, 1474
TseFI	GTSAC	3 cut(s)	120, 1382, 1444
TseI	GCWGC	6 cut(s)	509, 644, 740, 812, 815, 1001
Tsp45I	GTSAC	3 cut(s)	120, 1382, 1444
TspDTI	ATGAA	5 cut(s)	230, 445, 454, 785, 1288
TspGWI	ACGGA	2 cut(s)	608, 774
TspRI	CASTG	6 cut(s)	402, 937, 966, 1090, 1284, 1474
Van91I	CCANNNNNTGG	1 cut(s)	1366
VpaK11BI	GGWCC	2 cut(s)	111, 320
VspI	ATTAAT	1 cut(s)	908
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	3 cut(s)	45, 1090, 1474
XmaJI	CCTAGG	1 cut(s)	1060
XmnI	GAANNNNTTC	2 cut(s)	30, 87
XspI	CTAG	3 cut(s)	519, 1061, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.