FvH4_3g14701

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017625
Physical Location & Seq
Reverse (-)
9064046 .. 9065015
970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14701.t1

Sequence Viewer

Length: 720 bp
ATGGAGAAGATCACCGTGAGGACCTCAGATGGCCATGAGTTCGAGCTGGAGGAGCACCTGGCATTGCAATCGGCCCCCATTAAAACCTCACTGGACCTTCCCGGTGAAACTGTACCGCTCTCCAACGTGAACAGCTGGGAGATGGTGAAGGTCATCGCGTTCTTCACCAAGCTACAAGAGCTGGAGACCAGTTTCGGCGTTAAATTCATGGAGAAAAAAGAGGATCGGTTTCTTGAGGCCTTCCAGAACGAGTTCGACAAGGACTTGAGCGATGAAAACTTGGTGTGTCTCCTTTGCGCTGTGAGTTACTTGGAAATTGAGGTTTTGCAAGAGATTATGTGCAGCTTAATGGCTGAGAGGATCAAGACCAAGTCGCTCGACTATTGCAGGGACTTGTTTGGGGTTTCGAGTGACTATACTCCTGAAGAGGAAGCGAAAAATCGGAAGGATTATTGTTGGGCTTTCGAAGGCTCTGAAATTGAAAAATACAAAAGACCTGCGCGCAGATTGGCAAACATGCAAGTCAACCTTGAAAGACTTACAGTGGACACGTACCTGTCATACCAGCCTCCGGATATAGATTTCCAGCCTCCGGGTATAGATTTCCACAAGAGAATTATAGATCGCGAATCAATGAGGTGCAACGGGGATCAAACTTGGATGGGGTCTCCACCACGCCCGCCCTTACCAACTGAGCCAAACCTTGTTGGTGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

240

Amino Acids

27.7

Weight (kDa)

4.73

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 3 - 56 1.2e-06 Skp1 family, tetramerisation domain
Skp1 PF01466 109 - 154 3.1e-10 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 3 cut(s) 158, 502, 627
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 2 cut(s) 116, 680
AclWI GGATC 3 cut(s) 231, 368, 657
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 114, 554
AfiI CCNNNNNNNGG 2 cut(s) 571, 592
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 2 cut(s) 482, 533
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 46, 135, 172, 181, 345
AluI AGCT 5 cut(s) 46, 135, 172, 181, 345
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 179, 293, 672
AlwI GGATC 3 cut(s) 231, 368, 657
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 3 cut(s) 31, 72, 237
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 299, 502, 504
AspS9I GGNCC 3 cut(s) 21, 73, 94
AsuC2I CCSGG 2 cut(s) 102, 594
AsuHPI GGTGA 4 cut(s) 4, 116, 157, 157
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 2 cut(s) 21, 94
BalI TGGCCA 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 354
BccI CCATC 3 cut(s) 23, 136, 655
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 2 cut(s) 102, 594
BcoDI GTCTC 3 cut(s) 179, 293, 672
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 3 cut(s) 59, 102, 594
Bme18I GGWCC 2 cut(s) 21, 94
BmgT120I GGNCC 3 cut(s) 21, 73, 94
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 3 cut(s) 59, 102, 594
BpmI CTGGAG 2 cut(s) 68, 203
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 254, 286
BpuMI CCSGG 2 cut(s) 102, 594
BsaAI YACGTR 1 cut(s) 552
BsaI GGTCTC 2 cut(s) 179, 672
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 2 cut(s) 571, 592
Bse1I ACTGG 2 cut(s) 96, 189
Bse3DI GCAATG 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 571
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 571, 592
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 3 cut(s) 39, 345, 684
BseNI ACTGG 2 cut(s) 96, 189
BsePI GCGCGC 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 361
Bsh1236I CGCG 3 cut(s) 158, 502, 627
BshFI GGCC 3 cut(s) 33, 74, 239
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 102, 572, 593
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 571, 592
BsmAI GTCTC 3 cut(s) 179, 293, 672
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 3 cut(s) 33, 74, 239
Bso31I GGTCTC 2 cut(s) 179, 672
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 5 cut(s) 9, 223, 360, 622, 649
Bsp68I TCGCGA 1 cut(s) 627
BspACI CCGC 2 cut(s) 116, 680
BspANI GGCC 3 cut(s) 33, 74, 239
BspCNI CTCAG 3 cut(s) 38, 346, 685
BspEI TCCGGA 1 cut(s) 571
BspFNI CGCG 3 cut(s) 158, 502, 627
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 3 cut(s) 231, 368, 657
BspT104I TTCGAA 1 cut(s) 465
BspTNI GGTCTC 2 cut(s) 179, 672
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 2 cut(s) 96, 189
BssHII GCGCGC 1 cut(s) 500
BssMI GATC 5 cut(s) 9, 223, 360, 622, 649
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 16, 112, 544
Bst6I CTCTTC 1 cut(s) 420
BstBAI YACGTR 1 cut(s) 552
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 502, 680
BstDEI CTNAG 3 cut(s) 25, 354, 693
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 3 cut(s) 158, 502, 627
BstHHI GCGC 3 cut(s) 299, 502, 504
BstKTI GATC 5 cut(s) 12, 226, 363, 625, 652
BstMAI GTCTC 3 cut(s) 179, 293, 672
BstMBI GATC 5 cut(s) 9, 223, 360, 622, 649
BstMWI GCNNNNNNNGC 2 cut(s) 52, 178
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 57, 100, 592
BstUI CGCG 3 cut(s) 158, 502, 627
BstV1I GCAGC 1 cut(s) 354
BsuRI GGCC 3 cut(s) 33, 74, 239
BtgZI GCGATG 2 cut(s) 139, 285
BtsCI GGATG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 89, 549
BtuMI TCGCGA 1 cut(s) 627
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 502, 680
CfoI GCGC 3 cut(s) 299, 502, 504
Cfr13I GGNCC 3 cut(s) 21, 73, 94
Csp6I GTAC 2 cut(s) 113, 553
CviAII CATG 3 cut(s) 35, 208, 517
CviQI GTAC 2 cut(s) 113, 553
DdeI CTNAG 3 cut(s) 25, 354, 693
DpnI GATC 5 cut(s) 11, 225, 362, 624, 651
DpnII GATC 5 cut(s) 9, 223, 360, 622, 649
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco147I AGGCCT 1 cut(s) 239
Eco31I GGTCTC 2 cut(s) 179, 672
Eco47I GGWCC 2 cut(s) 21, 94
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 38, 211, 520
FaiI YATR 9 cut(s) 36, 209, 338, 417, 518, 562, 578, 599, 620
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 1 cut(s) 404
FatI CATG 3 cut(s) 34, 207, 516
FauI CCCGC 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 1 cut(s) 343
GlaI GCGC 3 cut(s) 298, 501, 503
GluI GCNGC 1 cut(s) 343
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 68, 203
HaeIII GGCC 3 cut(s) 33, 74, 239
HapII CCGG 3 cut(s) 102, 572, 593
HhaI GCGC 3 cut(s) 299, 502, 504
Hin1II CATG 3 cut(s) 38, 211, 520
Hin6I GCGC 3 cut(s) 297, 500, 502
HinP1I GCGC 3 cut(s) 297, 500, 502
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 1 cut(s) 629
HpaII CCGG 3 cut(s) 102, 572, 593
HphI GGTGA 4 cut(s) 4, 116, 157, 157
Hpy166II GTNNAC 3 cut(s) 130, 526, 547
Hpy188I TCNGA 3 cut(s) 28, 444, 475
Hpy188III TCNNGA 6 cut(s) 233, 244, 364, 422, 572, 626
Hpy8I GTNNAC 3 cut(s) 130, 526, 547
HpyAV CCTTC 5 cut(s) 107, 142, 250, 439, 461
HpyCH4III ACNGT 3 cut(s) 16, 112, 544
HpyCH4IV ACGT 2 cut(s) 126, 551
HpyCH4V TGCA 6 cut(s) 67, 328, 342, 387, 520, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 178
HpyF3I CTNAG 3 cut(s) 25, 354, 693
HpySE526I ACGT 2 cut(s) 126, 551
Hsp92II CATG 3 cut(s) 38, 211, 520
HspAI GCGC 3 cut(s) 297, 500, 502
Kpn2I TCCGGA 1 cut(s) 571
Kzo9I GATC 5 cut(s) 9, 223, 360, 622, 649
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 354
MaeII ACGT 2 cut(s) 126, 551
MaeIII GTNAC 2 cut(s) 305, 410
MalI GATC 5 cut(s) 11, 225, 362, 624, 651
MbiI CCGCTC 1 cut(s) 118
MboI GATC 5 cut(s) 9, 223, 360, 622, 649
MboII GAAGA 3 cut(s) 19, 154, 437
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 4 cut(s) 203, 315, 477, 615
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 33
MroI TCCGGA 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 251
MscI TGGCCA 1 cut(s) 33
MseI TTAA 4 cut(s) 81, 201, 347, 718
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 3 cut(s) 102, 572, 593
MspR9I CCNGG 3 cut(s) 59, 102, 594
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 3 cut(s) 158, 502, 627
MwoI GCNNNNNNNGC 2 cut(s) 52, 178
NciI CCSGG 2 cut(s) 102, 594
NdeII GATC 5 cut(s) 9, 223, 360, 622, 649
NlaIII CATG 3 cut(s) 38, 211, 520
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 410
NruI TCGCGA 1 cut(s) 627
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 465
PauI GCGCGC 1 cut(s) 500
PceI AGGCCT 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 629
PflFI GACNNNGTC 1 cut(s) 370
PkrI GCNGC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 552
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 3 cut(s) 21, 73, 94
PspPPI RGGWCCY 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 370
PteI GCGCGC 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 135
RruI TCGCGA 1 cut(s) 627
RsaI GTAC 2 cut(s) 114, 554
RsaNI GTAC 2 cut(s) 113, 553
SaqAI TTAA 4 cut(s) 81, 201, 347, 718
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 5 cut(s) 9, 223, 360, 622, 649
Sau96I GGNCC 3 cut(s) 21, 73, 94
ScrFI CCNGG 3 cut(s) 59, 102, 594
SduI GDGCHC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 465
SinI GGWCC 2 cut(s) 21, 94
SmlI CTYRAG 2 cut(s) 233, 265
SmoI CTYRAG 2 cut(s) 233, 265
Sse9I AATT 4 cut(s) 203, 315, 477, 615
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 2 cut(s) 116, 680
StuI AGGCCT 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 57, 100, 592
TaaI ACNGT 3 cut(s) 16, 112, 544
TaiI ACGT 2 cut(s) 129, 554
TaqI TCGA 5 cut(s) 42, 255, 378, 407, 465
TasI AATT 4 cut(s) 203, 315, 477, 615
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 4 cut(s) 81, 201, 347, 718
Tru9I TTAA 4 cut(s) 81, 201, 347, 718
TscAI CASTG 2 cut(s) 96, 549
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 196, 288
TspRI CASTG 2 cut(s) 96, 549
Tth111I GACNNNGTC 1 cut(s) 370
VpaK11BI GGWCC 2 cut(s) 21, 94
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.