modification-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g14701 |
| rosa_chinensis | RchiOBHm_Chr5g0024201 |
| rosa_laevigata | RLG00000032780 |
| rosa_multiflora | Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00055040 Rroxscaffold_1G00055720 |
| rosa_samantha | Rh5AG173100 Rh5CG185700 Rh5DG172200 |
| rosa_wichuraiana | Rw5G015620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 53 |
| AcoI | YGGCCR | 2 cut(s) | 58, 99 |
| AcyI | GRCGYC | 1 cut(s) | 50 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 1 cut(s) | 209 |
| AjnI | CCWGG | 3 cut(s) | 60, 84, 131 |
| AluBI | AGCT | 3 cut(s) | 73, 168, 214 |
| AluI | AGCT | 3 cut(s) | 73, 168, 214 |
| AoxI | GGCC | 2 cut(s) | 58, 99 |
| AsuHPI | GGTGA | 2 cut(s) | 190, 190 |
| BalI | TGGCCA | 1 cut(s) | 60 |
| BccI | CCATC | 4 cut(s) | 50, 113, 164, 169 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 3 cut(s) | 62, 86, 133 |
| BglII | AGATCT | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 3 cut(s) | 62, 86, 133 |
| BmrFI | CCNGG | 3 cut(s) | 62, 86, 133 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BsaHI | GRCGYC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 2 cut(s) | 132, 201 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse3DI | GCAATG | 1 cut(s) | 96 |
| BseBI | CCWGG | 3 cut(s) | 62, 86, 133 |
| BseDI | CCNNGG | 2 cut(s) | 132, 201 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMI | GCAATG | 1 cut(s) | 96 |
| BseYI | CCCAGC | 1 cut(s) | 168 |
| BshFI | GGCC | 2 cut(s) | 60, 101 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| BsnI | GGCC | 2 cut(s) | 60, 101 |
| Bsp143I | GATC | 3 cut(s) | 6, 36, 183 |
| BspANI | GGCC | 2 cut(s) | 60, 101 |
| BsrDI | GCAATG | 1 cut(s) | 96 |
| BssECI | CCNNGG | 2 cut(s) | 132, 201 |
| BssMI | GATC | 3 cut(s) | 6, 36, 183 |
| BssNI | GRCGYC | 1 cut(s) | 50 |
| BssT1I | CCWWGG | 1 cut(s) | 201 |
| Bst2UI | CCWGG | 3 cut(s) | 62, 86, 133 |
| Bst6I | CTCTTC | 2 cut(s) | 12, 72 |
| BstACI | GRCGYC | 1 cut(s) | 50 |
| BstKTI | GATC | 3 cut(s) | 9, 39, 186 |
| BstMBI | GATC | 3 cut(s) | 6, 36, 183 |
| BstNI | CCWGG | 3 cut(s) | 62, 86, 133 |
| BstSCI | CCNGG | 3 cut(s) | 60, 84, 131 |
| BstX2I | RGATCY | 1 cut(s) | 36 |
| BstYI | RGATCY | 1 cut(s) | 36 |
| BsuRI | GGCC | 2 cut(s) | 60, 101 |
| CviJI | RGCY | 5 cut(s) | 60, 73, 101, 168, 214 |
| CviKI_1 | RGCY | 5 cut(s) | 60, 73, 101, 168, 214 |
| DpnI | GATC | 3 cut(s) | 8, 38, 185 |
| DpnII | GATC | 3 cut(s) | 6, 36, 183 |
| EaeI | YGGCCR | 2 cut(s) | 58, 99 |
| Eam1104I | CTCTTC | 2 cut(s) | 12, 72 |
| EarI | CTCTTC | 2 cut(s) | 12, 72 |
| Eco130I | CCWWGG | 1 cut(s) | 201 |
| EcoRII | CCWGG | 3 cut(s) | 60, 84, 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 201 |
| ErhI | CCWWGG | 1 cut(s) | 201 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| GsaI | CCCAGC | 1 cut(s) | 172 |
| HaeIII | GGCC | 2 cut(s) | 60, 101 |
| Hin1I | GRCGYC | 1 cut(s) | 50 |
| HinfI | GANTC | 1 cut(s) | 95 |
| HphI | GGTGA | 2 cut(s) | 190, 190 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 2 cut(s) | 160, 209 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92I | GRCGYC | 1 cut(s) | 50 |
| Kzo9I | GATC | 3 cut(s) | 6, 36, 183 |
| LmnI | GCTCC | 1 cut(s) | 156 |
| LpnPI | CCDG | 8 cut(s) | 47, 59, 71, 74, 98, 118, 145, 154 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MalI | GATC | 3 cut(s) | 8, 38, 185 |
| MboI | GATC | 3 cut(s) | 6, 36, 183 |
| MboII | GAAGA | 8 cut(s) | 29, 34, 37, 43, 46, 89, 187, 193 |
| MflI | RGATCY | 1 cut(s) | 36 |
| MlsI | TGGCCA | 1 cut(s) | 60 |
| MluNI | TGGCCA | 1 cut(s) | 60 |
| MnlI | CCTC | 2 cut(s) | 39, 128 |
| Mox20I | TGGCCA | 1 cut(s) | 60 |
| MscI | TGGCCA | 1 cut(s) | 60 |
| Msp20I | TGGCCA | 1 cut(s) | 60 |
| MspR9I | CCNGG | 3 cut(s) | 62, 86, 133 |
| MvaI | CCWGG | 3 cut(s) | 62, 86, 133 |
| NdeII | GATC | 3 cut(s) | 6, 36, 183 |
| PfeI | GAWTC | 1 cut(s) | 95 |
| Psp6I | CCWGG | 3 cut(s) | 60, 84, 131 |
| PspFI | CCCAGC | 1 cut(s) | 168 |
| PspGI | CCWGG | 3 cut(s) | 60, 84, 131 |
| PsuI | RGATCY | 1 cut(s) | 36 |
| Sau3AI | GATC | 3 cut(s) | 6, 36, 183 |
| ScrFI | CCNGG | 3 cut(s) | 62, 86, 133 |
| SetI | ASST | 5 cut(s) | 53, 75, 87, 170, 207 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| StyD4I | CCNGG | 3 cut(s) | 60, 84, 131 |
| StyI | CCWWGG | 1 cut(s) | 201 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TaqI | TCGA | 3 cut(s) | 69, 120, 189 |
| TfiI | GAWTC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 44 |
| TspGWI | ACGGA | 1 cut(s) | 31 |
| ZraI | GACGTC | 1 cut(s) | 51 |