Rmu_co8420173.1_g000001

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8420173.1
OG0017625
Physical Location & Seq
Reverse (-)
1019 .. 1366
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8420173.1_g000001.1.cds

Sequence Viewer

Length: 348 bp
atggtgaagatcatcgagttcttcaccaaggttcaagagctggagaccaagttcggtgttaagttcatggaaaagaaagagggtcggttccttgaggcattccaggccgagttcgacaaggacttgagcgatgacaacttgcgccgtctcctttggactgtggattacttgcaaattgaggttttgctagcgaatttgtgccacttaatggctgagaggaccaagaataagacggtcgagtcctgcaggaatttatttggagttcggcctgattatacttctgaagaggaagcggaaattcgcgaggattatgcgtgggctttcgaaggccctgaaattgaagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

115

Amino Acids

13.69

Weight (kDa)

4.67

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 293
AcsI RAATTY 3 cut(s) 193, 250, 297
AcuI CTGAAG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 35, 341
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 38, 152
AoxI GGCC 3 cut(s) 105, 266, 328
ApoI RAATTY 3 cut(s) 193, 250, 297
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 219, 329
AsuHPI GGTGA 2 cut(s) 16, 16
AsuII TTCGAA 1 cut(s) 324
AsuNHI GCTAGC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 38, 152
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 219, 329
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 104
BmtI GCTAGC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 113, 145
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 107, 268, 330
BsiEI CGRYCG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 38, 152
BsmBI CGTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 3 cut(s) 107, 268, 330
Bso31I GGTCTC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 1 cut(s) 9
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 107, 268, 330
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 248
BspOI GCTAGC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 160, 235
Bst6I CTCTTC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 38, 152
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 107, 268, 330
BtgZI GCGATG 1 cut(s) 144
BtuMI TCGCGA 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 219, 329
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 40, 107, 212, 268, 320, 330
CviKI_1 RGCY 6 cut(s) 40, 107, 212, 268, 320, 330
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 276, 312
FatI CATG 1 cut(s) 66
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 3 cut(s) 107, 268, 330
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 1 cut(s) 239
HphI GGTGA 2 cut(s) 16, 16
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 35, 302
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 160, 235
HpyCH4V TGCA 2 cut(s) 172, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 26, 89, 116, 232, 256, 282
MaeI CTAG 1 cut(s) 188
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 13, 19, 296
MluCI AATT 5 cut(s) 174, 193, 250, 297, 336
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 6 cut(s) 73, 88, 172, 210, 280, 298
MseI TTAA 2 cut(s) 60, 206
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 9
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 303
NspV TTCGAA 1 cut(s) 324
PctI GAATGC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 208
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 219, 329
PstI CTGCAG 1 cut(s) 248
RruI TCGCGA 1 cut(s) 303
SaqAI TTAA 2 cut(s) 60, 206
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 219, 329
SbfI CCTGCAGG 1 cut(s) 248
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 104
SdaI CCTGCAGG 1 cut(s) 248
SetI ASST 3 cut(s) 33, 42, 183
SfcI CTRYAG 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 92, 124
SmoI CTYRAG 2 cut(s) 92, 124
Sse8387I CCTGCAGG 1 cut(s) 248
Sse9I AATT 5 cut(s) 174, 193, 250, 297, 336
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 160, 235
TaqI TCGA 4 cut(s) 15, 114, 237, 324
TasI AATT 5 cut(s) 174, 193, 250, 297, 336
Tru1I TTAA 2 cut(s) 60, 206
Tru9I TTAA 2 cut(s) 60, 206
TspDTI ATGAA 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 3 cut(s) 193, 250, 297
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.