Rh5CG185700

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017625
Physical Location & Seq
Reverse (-)
18553150 .. 18553787
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG185700.1

Sequence Viewer

Length: 513 bp
ATGTTGATCGCCACCGAAGAGAAGAAGATCTCCGTGAGGACGTCAGATGGCCAGGAGTTCGAGCTGGAAGAGAACCTGGCAATGGAATCGGCCATCATCAAAACCTCCCTCGATGCTTTTTCCAGGGACGACATTATTCTGCTCCCCAACGTGAATAGCTGGGAGATGGTGAAGATCATCGAGTTCTTCACCAAGGTTCAAGAGCTGGAGACCAAGTTCGGTGTTAAGTTCATGGAAAAGAAAGAGGGTCGATTCCTTGAGGCATTCCAGGCCGAGTTCGACAAGGACTTGAGCGATGACAACTTGCGCTGTCTCCTTTGGACTGTGGATTACTTGGGAATTGAGGTTTTGCTAGAGAATTTGTGCCACTTAATGGCTGAGAGGACCAAGAATAAGACGGTCGAGTCTTGCAGGAATTTATTTGGAGTTCAGCATGATTATACTCCTGAAGAGGAAGCGGAAATTCGCGAGGATTATTCGTGGGCTTTCGAAGGCCCTGAAATTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

170

Amino Acids

19.89

Weight (kDa)

4.44

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 8 - 65 1.1e-10 Skp1 family, tetramerisation domain
Skp1 PF01466 117 - 162 1.1e-13 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AatII GACGTC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 1 cut(s) 468
AciI CCGC 1 cut(s) 458
AcoI YGGCCR 2 cut(s) 49, 90
AcsI RAATTY 3 cut(s) 358, 415, 462
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 82, 373
AgsI TTSAA 2 cut(s) 200, 506
AjnI CCWGG 4 cut(s) 51, 75, 122, 267
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 64, 159, 205
AluI AGCT 3 cut(s) 64, 159, 205
Alw26I GTCTC 2 cut(s) 203, 317
AoxI GGCC 4 cut(s) 49, 90, 270, 493
ApoI RAATTY 3 cut(s) 358, 415, 462
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 384, 494
AsuHPI GGTGA 2 cut(s) 181, 181
AsuII TTCGAA 1 cut(s) 489
AvaII GGWCC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 51
BccI CCATC 3 cut(s) 41, 101, 160
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 4 cut(s) 53, 77, 124, 269
BcoDI GTCTC 2 cut(s) 203, 317
BfaI CTAG 1 cut(s) 353
BglII AGATCT 1 cut(s) 27
Bme1390I CCNGG 4 cut(s) 53, 77, 124, 269
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 384, 494
BmrFI CCNGG 4 cut(s) 53, 77, 124, 269
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 2 cut(s) 278, 310
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 123, 192
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 373
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 4 cut(s) 53, 77, 124, 269
BseDI CCNNGG 2 cut(s) 123, 192
BseLI CCNNNNNNNGG 2 cut(s) 82, 373
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 4 cut(s) 51, 92, 272, 495
BsiEI CGRYCG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 82, 373
BsmAI GTCTC 2 cut(s) 203, 317
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 4 cut(s) 51, 92, 272, 495
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 6, 27, 174
Bsp68I TCGCGA 1 cut(s) 468
BspACI CCGC 1 cut(s) 458
BspANI GGCC 4 cut(s) 51, 92, 272, 495
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 123, 192
BssMI GATC 3 cut(s) 6, 27, 174
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 4 cut(s) 53, 77, 124, 269
Bst4CI ACNGT 2 cut(s) 325, 400
Bst6I CTCTTC 3 cut(s) 12, 63, 444
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 3 cut(s) 9, 30, 177
BstMAI GTCTC 2 cut(s) 203, 317
BstMBI GATC 3 cut(s) 6, 27, 174
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 4 cut(s) 53, 77, 124, 269
BstSCI CCNGG 4 cut(s) 51, 75, 122, 267
BstUI CGCG 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 4 cut(s) 51, 92, 272, 495
BtgZI GCGATG 1 cut(s) 309
BtuMI TCGCGA 1 cut(s) 468
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 384, 494
CviAII CATG 2 cut(s) 232, 434
CviJI RGCY 9 cut(s) 51, 64, 92, 159, 205, 272, 377, 485, 495
CviKI_1 RGCY 9 cut(s) 51, 64, 92, 159, 205, 272, 377, 485, 495
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 8, 29, 176
DpnII GATC 3 cut(s) 6, 27, 174
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 49, 90
Eam1104I CTCTTC 3 cut(s) 12, 63, 444
EarI CTCTTC 3 cut(s) 12, 63, 444
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 4 cut(s) 51, 75, 122, 267
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 235, 437
FaiI YATR 3 cut(s) 233, 435, 441
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 231, 433
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 308
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 4 cut(s) 51, 92, 272, 495
HhaI GCGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 235, 437
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 3 cut(s) 86, 252, 404
HphI GGTGA 2 cut(s) 181, 181
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 200, 446, 467
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 325, 400
HpyCH4IV ACGT 2 cut(s) 41, 150
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 41, 150
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 235, 437
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 6, 27, 174
LmnI GCTCC 1 cut(s) 147
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 41, 150
MalI GATC 3 cut(s) 8, 29, 176
MboI GATC 3 cut(s) 6, 27, 174
MboII GAAGA 7 cut(s) 29, 34, 37, 80, 178, 184, 461
MflI RGATCY 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 5 cut(s) 339, 358, 415, 462, 501
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 9 cut(s) 30, 115, 119, 238, 253, 337, 375, 445, 463
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 225, 371
Msp20I TGGCCA 1 cut(s) 51
MspR9I CCNGG 4 cut(s) 53, 77, 124, 269
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 4 cut(s) 53, 77, 124, 269
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 6, 27, 174
NlaIII CATG 2 cut(s) 235, 437
NmeAIII GCCGAG 1 cut(s) 298
NruI TCGCGA 1 cut(s) 468
NspV TTCGAA 1 cut(s) 489
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 86, 252
PflMI CCANNNNNTGG 1 cut(s) 373
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 4 cut(s) 51, 75, 122, 267
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 4 cut(s) 51, 75, 122, 267
PspPI GGNCC 2 cut(s) 384, 494
PsuI RGATCY 1 cut(s) 27
RruI TCGCGA 1 cut(s) 468
SaqAI TTAA 2 cut(s) 225, 371
Sau3AI GATC 3 cut(s) 6, 27, 174
Sau96I GGNCC 2 cut(s) 384, 494
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 4 cut(s) 53, 77, 124, 269
SetI ASST 9 cut(s) 44, 66, 78, 107, 153, 161, 198, 207, 348
SfaNI GCATC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 257, 289
SmoI CTYRAG 2 cut(s) 257, 289
Sse9I AATT 5 cut(s) 339, 358, 415, 462, 501
SsiI CCGC 1 cut(s) 458
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 4 cut(s) 51, 75, 122, 267
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 325, 400
TaiI ACGT 2 cut(s) 44, 153
TaqI TCGA 7 cut(s) 60, 111, 180, 250, 279, 402, 489
TasI AATT 5 cut(s) 339, 358, 415, 462, 501
TfiI GAWTC 2 cut(s) 86, 252
Tru1I TTAA 2 cut(s) 225, 371
Tru9I TTAA 2 cut(s) 225, 371
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 3 cut(s) 358, 415, 462
XspI CTAG 1 cut(s) 353
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.