Rw5G015620

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017625
Physical Location & Seq
Reverse (-)
19374588 .. 19375082
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015620.1

Sequence Viewer

Length: 495 bp
ATGAAGAAGATCTCCGTGAGGACGTCAGATGGCCAGGAGTTCGAGCTGGAAGAGAACCTGGCAATGGAATCGGCCACCATCAAAACTTCCCTCGATGCTTTTTCCAGGGACGACATTATTCTGCTCCCCATCGTGAATAGCTGGGAGATGGTGAAGATCATCGAGTTCTTCACCAAGGTTCAAGAGCTGGAGACCAAGTTCGGTGTTAAGTTCATGGAAAAGAAAGAGGGTCGGTTCCTTGAGGCATTCCAGGCCGAGTTCGACAAGGACTTGAGCGATGACAACTTGCGCCGTCTCCTTTGGACTGTGGATTACTTGCAAATTGAGGTTTTGCTAGCGAATTTGTGCCACTTAATGGCTGAGAGGACCAAGAATAAGACGGTCGAGTCCTGCAGGAATTTATTTGGAGTTCGGCCTGATTATACTCCTGAAGAGGAAGCGGAAATTCGCGAGGATTATGCGTGGGCTTTCGAAGGCCCTGAAATTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

164

Amino Acids

19.26

Weight (kDa)

4.56

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 2 - 59 1.7e-09 Skp1 family, tetramerisation domain
Skp1 PF01466 111 - 156 3.8e-13 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AatII GACGTC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 355
AccII CGCG 1 cut(s) 450
AciI CCGC 1 cut(s) 440
AcoI YGGCCR 2 cut(s) 31, 72
AcsI RAATTY 3 cut(s) 340, 397, 444
AcuI CTGAAG 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 64, 355
AgsI TTSAA 2 cut(s) 182, 488
AjnI CCWGG 4 cut(s) 33, 57, 104, 249
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 3 cut(s) 46, 141, 187
AluI AGCT 3 cut(s) 46, 141, 187
Alw26I GTCTC 2 cut(s) 185, 299
AoxI GGCC 5 cut(s) 31, 72, 252, 413, 475
ApoI RAATTY 3 cut(s) 340, 397, 444
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 366, 476
AsuHPI GGTGA 2 cut(s) 163, 163
AsuII TTCGAA 1 cut(s) 471
AsuNHI GCTAGC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 366
BalI TGGCCA 1 cut(s) 33
BccI CCATC 4 cut(s) 23, 86, 137, 142
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 4 cut(s) 51, 85, 440, 474
BciT130I CCWGG 4 cut(s) 35, 59, 106, 251
BcoDI GTCTC 2 cut(s) 185, 299
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 391
BglII AGATCT 1 cut(s) 9
Bme1390I CCNGG 4 cut(s) 35, 59, 106, 251
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 366, 476
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 4 cut(s) 35, 59, 106, 251
BmsI GCATC 1 cut(s) 85
BmtI GCTAGC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 260, 292
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 105, 174
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 355
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 4 cut(s) 35, 59, 106, 251
BseDI CCNNGG 2 cut(s) 105, 174
BseLI CCNNNNNNNGG 2 cut(s) 64, 355
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 5 cut(s) 33, 74, 254, 415, 477
BsiEI CGRYCG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 64, 355
BsmAI GTCTC 2 cut(s) 185, 299
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 5 cut(s) 33, 74, 254, 415, 477
Bso31I GGTCTC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 9, 156
Bsp68I TCGCGA 1 cut(s) 450
BspACI CCGC 1 cut(s) 440
BspANI GGCC 5 cut(s) 33, 74, 254, 415, 477
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 105, 174
BssMI GATC 2 cut(s) 9, 156
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 4 cut(s) 35, 59, 106, 251
Bst4CI ACNGT 2 cut(s) 307, 382
Bst6I CTCTTC 2 cut(s) 45, 426
BstACI GRCGYC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 12, 159
BstMAI GTCTC 2 cut(s) 185, 299
BstMBI GATC 2 cut(s) 9, 156
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 4 cut(s) 35, 59, 106, 251
BstSCI CCNGG 4 cut(s) 33, 57, 104, 249
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 5 cut(s) 33, 74, 254, 415, 477
BtgZI GCGATG 1 cut(s) 291
BtuMI TCGCGA 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 366, 476
CviAII CATG 1 cut(s) 214
DdeI CTNAG 1 cut(s) 360
DpnI GATC 2 cut(s) 11, 158
DpnII GATC 2 cut(s) 9, 156
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 2 cut(s) 31, 72
Eam1104I CTCTTC 2 cut(s) 45, 426
EarI CTCTTC 2 cut(s) 45, 426
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 4 cut(s) 33, 57, 104, 249
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 215, 423, 459
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 213
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 290
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 5 cut(s) 33, 74, 254, 415, 477
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 68, 386
HphI GGTGA 2 cut(s) 163, 163
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 4 cut(s) 133, 182, 428, 449
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 307, 382
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 319, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 9, 156
LmnI GCTCC 1 cut(s) 129
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 23
MalI GATC 2 cut(s) 11, 158
MboI GATC 2 cut(s) 9, 156
MboII GAAGA 6 cut(s) 16, 19, 62, 160, 166, 443
MflI RGATCY 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 5 cut(s) 321, 340, 397, 444, 483
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 8 cut(s) 12, 101, 220, 235, 319, 357, 427, 445
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 2 cut(s) 207, 353
Msp20I TGGCCA 1 cut(s) 33
MspR9I CCNGG 4 cut(s) 35, 59, 106, 251
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 4 cut(s) 35, 59, 106, 251
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 2 cut(s) 9, 156
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 280
NruI TCGCGA 1 cut(s) 450
NspV TTCGAA 1 cut(s) 471
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 355
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 4 cut(s) 33, 57, 104, 249
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 4 cut(s) 33, 57, 104, 249
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 366, 476
PstI CTGCAG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 9
RruI TCGCGA 1 cut(s) 450
SaqAI TTAA 2 cut(s) 207, 353
Sau3AI GATC 2 cut(s) 9, 156
Sau96I GGNCC 2 cut(s) 366, 476
SbfI CCTGCAGG 1 cut(s) 395
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 4 cut(s) 35, 59, 106, 251
SdaI CCTGCAGG 1 cut(s) 395
SetI ASST 7 cut(s) 26, 48, 60, 143, 180, 189, 330
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 471
SinI GGWCC 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 239, 271
SmoI CTYRAG 2 cut(s) 239, 271
Sse8387I CCTGCAGG 1 cut(s) 395
Sse9I AATT 5 cut(s) 321, 340, 397, 444, 483
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 4 cut(s) 33, 57, 104, 249
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 307, 382
TaiI ACGT 1 cut(s) 26
TaqI TCGA 6 cut(s) 42, 93, 162, 261, 384, 471
TasI AATT 5 cut(s) 321, 340, 397, 444, 483
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 207, 353
Tru9I TTAA 2 cut(s) 207, 353
TspDTI ATGAA 2 cut(s) 17, 202
TspGWI ACGGA 1 cut(s) 4
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 3 cut(s) 340, 397, 444
XspI CTAG 1 cut(s) 335
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.