RLG00000032780

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017625
Physical Location & Seq
Reverse (-)
18982069 .. 18982590
522 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032780

Sequence Viewer

Length: 522 bp
ATGTTGTTCGCCACCGAAGAGAAGAAGATGAAGAAGATCTCCGTGAGGACGTCAGATGGCCAGGAGTTCGAACTGGAAGAGAACCTGGCAATGGAATCGGCCACCATCAAAACCTCCCTCGATGCTTTTTCCAGGGACGACATTATTCTGCTCCCCAACGTGAATAGCTGGGAGATGGTGAAGATCATCGAGTTCTTCACCAAGGTTCAAGAGCTGGAGACCAAGTTCGGTGTTAAGTTCATGGAAAAGAAAGAGGGTCGGTTCCTTGAGGCATTCCAGGCCGAGTTCGACAAGGACTTGAGCGATGACAACTTGTGCTGTCTCCTTTGGACTGTGGATTACTTGCAAATTGAGGTTTTGCTAGAGAATTTGTGCCACTTAATGGCTGAGAGGACCAAGAATAAGACGGTCGAGTCTTGCAGGAATTTATTTGGAGTTCGGCCTGATTATACTCCTGAAGAGGACGCGGAAATTCGCAAGGATTATTCTTGGGCTTTCGAAGGCCCTGAAATTGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

174

Amino Acids

20.29

Weight (kDa)

4.55

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 11 - 68 5.6e-11 Skp1 family, tetramerisation domain
Skp1 PF01466 120 - 165 6e-13 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AatII GACGTC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 467
AciI CCGC 1 cut(s) 467
AcoI YGGCCR 2 cut(s) 58, 99
AcsI RAATTY 3 cut(s) 367, 424, 471
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 91, 382
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 4 cut(s) 60, 84, 131, 276
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 168, 214
AluI AGCT 2 cut(s) 168, 214
Alw26I GTCTC 2 cut(s) 212, 326
AoxI GGCC 5 cut(s) 58, 99, 279, 440, 502
ApoI RAATTY 3 cut(s) 367, 424, 471
AspS9I GGNCC 2 cut(s) 393, 503
AsuHPI GGTGA 2 cut(s) 190, 190
AsuII TTCGAA 2 cut(s) 69, 498
AvaII GGWCC 1 cut(s) 393
BalI TGGCCA 1 cut(s) 60
BccI CCATC 3 cut(s) 50, 113, 169
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 4 cut(s) 62, 86, 133, 278
BcoDI GTCTC 2 cut(s) 212, 326
BfaI CTAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 36
Bme1390I CCNGG 4 cut(s) 62, 86, 133, 278
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 393, 503
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 4 cut(s) 62, 86, 133, 278
BmsI GCATC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 2 cut(s) 69, 498
BpuEI CTTGAG 2 cut(s) 287, 319
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 132, 201
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 382
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 4 cut(s) 62, 86, 133, 278
BseDI CCNNGG 2 cut(s) 132, 201
BseLI CCNNNNNNNGG 2 cut(s) 91, 382
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 5 cut(s) 60, 101, 281, 442, 504
BsiEI CGRYCG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 91, 382
BsmAI GTCTC 2 cut(s) 212, 326
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 5 cut(s) 60, 101, 281, 442, 504
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 2 cut(s) 69, 498
Bsp143I GATC 2 cut(s) 36, 183
BspACI CCGC 1 cut(s) 467
BspANI GGCC 5 cut(s) 60, 101, 281, 442, 504
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 263
BspT104I TTCGAA 2 cut(s) 69, 498
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 132, 201
BssMI GATC 2 cut(s) 36, 183
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 4 cut(s) 62, 86, 133, 278
Bst4CI ACNGT 2 cut(s) 334, 409
Bst6I CTCTTC 3 cut(s) 12, 72, 453
BstACI GRCGYC 1 cut(s) 50
BstBI TTCGAA 2 cut(s) 69, 498
BstDEI CTNAG 1 cut(s) 387
BstFNI CGCG 1 cut(s) 467
BstKTI GATC 2 cut(s) 39, 186
BstMAI GTCTC 2 cut(s) 212, 326
BstMBI GATC 2 cut(s) 36, 183
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 4 cut(s) 62, 86, 133, 278
BstSCI CCNGG 4 cut(s) 60, 84, 131, 276
BstUI CGCG 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 5 cut(s) 60, 101, 281, 442, 504
BtgZI GCGATG 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 393, 503
CseI GACGC 1 cut(s) 473
CviAII CATG 1 cut(s) 241
CviJI RGCY 9 cut(s) 60, 101, 168, 214, 281, 386, 442, 494, 504
CviKI_1 RGCY 9 cut(s) 60, 101, 168, 214, 281, 386, 442, 494, 504
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 38, 185
DpnII GATC 2 cut(s) 36, 183
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 2 cut(s) 58, 99
Eam1104I CTCTTC 3 cut(s) 12, 72, 453
EarI CTCTTC 3 cut(s) 12, 72, 453
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 4 cut(s) 60, 84, 131, 276
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 244
FaiI YATR 2 cut(s) 242, 450
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 240
FspBI CTAG 1 cut(s) 362
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 5 cut(s) 60, 101, 281, 442, 504
HgaI GACGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 244
HinfI GANTC 2 cut(s) 95, 413
HphI GGTGA 2 cut(s) 190, 190
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 209, 455
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 334, 409
HpyCH4IV ACGT 2 cut(s) 50, 159
HpyCH4V TGCA 2 cut(s) 346, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 2 cut(s) 50, 159
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 244
Kzo9I GATC 2 cut(s) 36, 183
LmnI GCTCC 1 cut(s) 156
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 362
MaeII ACGT 2 cut(s) 50, 159
MalI GATC 2 cut(s) 38, 185
MboI GATC 2 cut(s) 36, 183
MboII GAAGA 9 cut(s) 29, 34, 37, 43, 46, 89, 187, 193, 470
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 5 cut(s) 348, 367, 424, 471, 510
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 9 cut(s) 39, 124, 128, 247, 262, 346, 384, 454, 508
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 234, 380
Msp20I TGGCCA 1 cut(s) 60
MspR9I CCNGG 4 cut(s) 62, 86, 133, 278
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 4 cut(s) 62, 86, 133, 278
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 2 cut(s) 36, 183
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 263
NmeAIII GCCGAG 1 cut(s) 307
NspV TTCGAA 2 cut(s) 69, 498
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 382
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 4 cut(s) 60, 84, 131, 276
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 4 cut(s) 60, 84, 131, 276
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 2 cut(s) 393, 503
PsuI RGATCY 1 cut(s) 36
SaqAI TTAA 2 cut(s) 234, 380
Sau3AI GATC 2 cut(s) 36, 183
Sau96I GGNCC 2 cut(s) 393, 503
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 4 cut(s) 62, 86, 133, 278
SetI ASST 8 cut(s) 53, 87, 116, 162, 170, 207, 216, 357
SfaNI GCATC 1 cut(s) 112
SfuI TTCGAA 2 cut(s) 69, 498
SinI GGWCC 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 266, 298
SmoI CTYRAG 2 cut(s) 266, 298
Sse9I AATT 5 cut(s) 348, 367, 424, 471, 510
SsiI CCGC 1 cut(s) 467
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 60, 84, 131, 276
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 334, 409
TaiI ACGT 2 cut(s) 53, 162
TaqI TCGA 6 cut(s) 69, 120, 189, 288, 411, 498
TasI AATT 5 cut(s) 348, 367, 424, 471, 510
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 234, 380
Tru9I TTAA 2 cut(s) 234, 380
TspDTI ATGAA 2 cut(s) 44, 229
TspGWI ACGGA 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 3 cut(s) 367, 424, 471
XspI CTAG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.