Rroxscaffold_1G00055040

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017625
Physical Location & Seq
Forward (+)
76443330 .. 76443851
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055040.1

Sequence Viewer

Length: 522 bp
ATGTTGATCGCCACCGAAGAGAAGAAGATGAAGAAGATCTCCGTGAGGACGTCGGATGGCCAGGAGTTCGAGCTGGAAGAGAACACGGCAATGGAATCGGCCATCATCAAAACCTCTCTCGATGCTTTTTCCAGGGACGACATTATTCTGCTCCCCAACGTGAAGAGCTGGGAGATGGTGAAGATCATCGAGTTCTTCACCAAGGTTCAAGAGCTGGAGACCAAGTTCGGTGTTAAGTTCATGGAAAAGAAAGAGGGTCGGTTCCTTGAGGCATTCCGGGCCGAGTTCGACAAGGACTTGAGCGATGACAACTTGGCACGTCTCCTTTGGATCGTGGATTACTTGCAAATTGAGGTTTTGCAAGAGAATTTGTGCCACTTAATGGCTGAGAGGACCAAGAATAAGACGGTCGAGTTTTGCAGGAATTTATTTGGAGTCAAGCCTCGATTATACTCTGAAGAGGATGCGGAAATTCGCGAGGATTATTCTTGGGCTTTCGAAGGCCCCGAAATTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

173

Amino Acids

20.42

Weight (kDa)

4.71

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 11 - 68 3.4e-10 Skp1 family, tetramerisation domain
Skp1 PF01466 124 - 165 9.3e-07 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 477
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 2 cut(s) 58, 99
AcsI RAATTY 3 cut(s) 367, 424, 471
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 209, 515
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 2 cut(s) 60, 131
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 73, 168, 214
AluI AGCT 3 cut(s) 73, 168, 214
Alw26I GTCTC 2 cut(s) 212, 326
AlwI GGATC 1 cut(s) 338
AoxI GGCC 4 cut(s) 58, 99, 279, 502
ApoI RAATTY 3 cut(s) 367, 424, 471
AspS9I GGNCC 3 cut(s) 279, 393, 503
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 190, 190
AsuII TTCGAA 1 cut(s) 498
AvaII GGWCC 1 cut(s) 393
BalI TGGCCA 1 cut(s) 60
BccI CCATC 3 cut(s) 50, 110, 169
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 2 cut(s) 62, 133
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 212, 326
BglII AGATCT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 62, 133, 278
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 3 cut(s) 279, 393, 503
BmiI GGNNCC 2 cut(s) 263, 505
BmrFI CCNGG 3 cut(s) 62, 133, 278
BmsI GCATC 2 cut(s) 112, 454
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 287, 319
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 132, 201
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 62, 133
BseDI CCNNGG 2 cut(s) 132, 201
BseGI GGATG 2 cut(s) 61, 469
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 4 cut(s) 60, 101, 281, 504
BsiEI CGRYCG 1 cut(s) 411
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 212, 326
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 4 cut(s) 60, 101, 281, 504
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 498
Bsp143I GATC 4 cut(s) 6, 36, 183, 330
Bsp68I TCGCGA 1 cut(s) 477
BspACI CCGC 1 cut(s) 467
BspANI GGCC 4 cut(s) 60, 101, 281, 504
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 263, 505
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 132, 201
BssMI GATC 4 cut(s) 6, 36, 183, 330
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 62, 133
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 4 cut(s) 12, 72, 158, 453
BstACI GRCGYC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 61, 469
BstFNI CGCG 1 cut(s) 477
BstKTI GATC 4 cut(s) 9, 39, 186, 333
BstMAI GTCTC 2 cut(s) 212, 326
BstMBI GATC 4 cut(s) 6, 36, 183, 330
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 2 cut(s) 62, 133
BstSCI CCNGG 3 cut(s) 60, 131, 276
BstUI CGCG 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 4 cut(s) 60, 101, 281, 504
BtgZI GCGATG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 61, 469
BtuMI TCGCGA 1 cut(s) 477
Cfr13I GGNCC 3 cut(s) 279, 393, 503
CviAII CATG 1 cut(s) 241
DdeI CTNAG 1 cut(s) 387
DpnI GATC 4 cut(s) 8, 38, 185, 332
DpnII GATC 4 cut(s) 6, 36, 183, 330
EaeI YGGCCR 2 cut(s) 58, 99
Eam1104I CTCTTC 4 cut(s) 12, 72, 158, 453
EarI CTCTTC 4 cut(s) 12, 72, 158, 453
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 60, 131
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 1 cut(s) 244
FaiI YATR 2 cut(s) 242, 451
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 240
FokI GGATG 2 cut(s) 68, 476
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 4 cut(s) 60, 101, 281, 504
HapII CCGG 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 244
HinfI GANTC 2 cut(s) 95, 435
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 190, 190
Hpy188I TCNGA 2 cut(s) 55, 457
Hpy188III TCNNGA 3 cut(s) 119, 209, 476
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 3 cut(s) 50, 159, 319
HpyCH4V TGCA 3 cut(s) 346, 361, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 3 cut(s) 50, 159, 319
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 244
Kzo9I GATC 4 cut(s) 6, 36, 183, 330
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 47, 59, 74, 118, 145, 154, 200, 290, 406
LweI GCATC 2 cut(s) 112, 454
MaeII ACGT 3 cut(s) 50, 159, 319
MalI GATC 4 cut(s) 8, 38, 185, 332
MboI GATC 4 cut(s) 6, 36, 183, 330
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 5 cut(s) 348, 367, 424, 471, 510
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 9 cut(s) 39, 124, 247, 262, 346, 384, 453, 454, 472
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 234, 380
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 3 cut(s) 62, 133, 278
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 62, 133
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 278
NdeII GATC 4 cut(s) 6, 36, 183, 330
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 263, 505
NmeAIII GCCGAG 1 cut(s) 307
NruI TCGCGA 1 cut(s) 477
NspV TTCGAA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 382
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 60, 131
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 60, 131
PspN4I GGNNCC 2 cut(s) 263, 505
PspPI GGNCC 3 cut(s) 279, 393, 503
PsuI RGATCY 1 cut(s) 36
RruI TCGCGA 1 cut(s) 477
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 234, 380
Sau3AI GATC 4 cut(s) 6, 36, 183, 330
Sau96I GGNCC 3 cut(s) 279, 393, 503
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 3 cut(s) 62, 133, 278
SetI ASST 9 cut(s) 53, 75, 116, 162, 170, 207, 216, 322, 357
SfaNI GCATC 2 cut(s) 112, 454
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 266, 298
SmoI CTYRAG 2 cut(s) 266, 298
Sse9I AATT 5 cut(s) 348, 367, 424, 471, 510
SsiI CCGC 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 60, 131, 276
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 3 cut(s) 53, 162, 322
TaqI TCGA 7 cut(s) 69, 120, 189, 288, 411, 445, 498
TasI AATT 5 cut(s) 348, 367, 424, 471, 510
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 234, 380
Tru9I TTAA 2 cut(s) 234, 380
TspDTI ATGAA 2 cut(s) 44, 229
TspGWI ACGGA 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 3 cut(s) 367, 424, 471
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.