Rroxscaffold_1G00055720

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017625
Physical Location & Seq
Reverse (-)
77399820 .. 77400167
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055720.1

Sequence Viewer

Length: 348 bp
ATGGTGAAGATCATCGAGTTCTTCACCAAGGTTCAAGAGCTGGAGACCAAGTTCGGTGTTAAGTTCATGGAAAAGAAAGAGGGTCGGTTCCTTGAGGCATTCCGGGCCGAGTTCGACAAGGACTTGAGCGATGACAACTTGGCACGTCTCCTTTGGACTGTGGATTACTTGCAAATTGAGGTTTTGCAAGAGAATTTGTGCCACTTAATGGCTGAGAGGACCAAGAATAAGACGGTCGAGTTTTGCAGGAATTTATTTGGAGTCAAGCCTGATTATACTCACGAAGAGGATGCGGAAATTCGCGAGGATTATTCTTGGGCTTTCGAAGGCCCCGAAATTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

115

Amino Acids

13.79

Weight (kDa)

4.68

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1 PF01466 66 - 107 2.5e-11 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14701
rosa_chinensis RchiOBHm_Chr5g0024201
rosa_laevigata RLG00000032780
rosa_multiflora Rmu_co8420173.1_g000001 Rmu_sc0004033.1_g000005 Rmu_sc0009993.1_g000001
rosa_roxburghii Rroxscaffold_1G00055040 Rroxscaffold_1G00055720
rosa_samantha Rh5AG173100 Rh5CG185700 Rh5DG172200
rosa_wichuraiana Rw5G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 293
AcsI RAATTY 3 cut(s) 193, 250, 297
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 35, 341
AjiI CACGTC 1 cut(s) 146
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 38, 152
AoxI GGCC 2 cut(s) 105, 328
ApoI RAATTY 3 cut(s) 193, 250, 297
AspS9I GGNCC 3 cut(s) 105, 219, 329
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 16, 16
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 38, 152
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 105, 219, 329
BmiI GGNNCC 2 cut(s) 89, 331
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 113, 145
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 107, 330
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 38, 152
BsmBI CGTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 2 cut(s) 107, 330
Bso31I GGTCTC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 1 cut(s) 9
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 107, 330
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 89, 331
BspT104I TTCGAA 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 160, 235
Bst6I CTCTTC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 38, 152
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstUI CGCG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 107, 330
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 295
BtuMI TCGCGA 1 cut(s) 303
Cfr13I GGNCC 3 cut(s) 105, 219, 329
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 40, 107, 212, 268, 320, 330
CviKI_1 RGCY 6 cut(s) 40, 107, 212, 268, 320, 330
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 276
FatI CATG 1 cut(s) 66
FokI GGATG 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 2 cut(s) 107, 330
HapII CCGG 1 cut(s) 103
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 16, 16
Hpy188III TCNNGA 3 cut(s) 35, 281, 302
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 160, 235
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 172, 187, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 26, 116, 232, 282
LweI GCATC 1 cut(s) 280
MaeII ACGT 1 cut(s) 145
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 13, 19, 296
MluCI AATT 5 cut(s) 174, 193, 250, 297, 336
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 6 cut(s) 73, 88, 172, 210, 280, 298
MseI TTAA 2 cut(s) 60, 206
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 98
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 89, 331
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 303
NspV TTCGAA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 208
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 89, 331
PspPI GGNCC 3 cut(s) 105, 219, 329
RruI TCGCGA 1 cut(s) 303
SaqAI TTAA 2 cut(s) 60, 206
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 3 cut(s) 105, 219, 329
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 104
SetI ASST 4 cut(s) 33, 42, 148, 183
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 92, 124
SmoI CTYRAG 2 cut(s) 92, 124
Sse9I AATT 5 cut(s) 174, 193, 250, 297, 336
SsiI CCGC 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 160, 235
TaiI ACGT 1 cut(s) 148
TaqI TCGA 4 cut(s) 15, 114, 237, 324
TasI AATT 5 cut(s) 174, 193, 250, 297, 336
Tru1I TTAA 2 cut(s) 60, 206
Tru9I TTAA 2 cut(s) 60, 206
TspDTI ATGAA 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 3 cut(s) 193, 250, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.