Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Forward (+)

10655208 .. 10657116

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCAGTAGCGGCCCGTGGGAAGCTCAACTTCGACGAAGAAGTCCCCGACGGATGCAGAGGCGTCGATTCCTTCGAGAATCTGAAACTTCTTGGCCAGGGCACATATGGCGAAGTCAACAAAGCTAAGGAAAAAAGGACCGGAGAGATTGTTGCTCTAAAGAAACTGAAGCTGGCAAAGGGGAATTACGAGAAGGAAGGCTTCCCCTTGACTGCAATAAGAGAAATCAAGATCCTGAACAAGCTTCTTCACGAAAATATCATCAAGTTGAAGGAGATTGTCACATCTCCGGTGCAAAGTCCCAGTGTTGATGATGGTGACATGACTGACATCTATATGGTGTTCGAATACATGGACCATGACTTGACCGGTCTGGCTAAGCGGGCTAGATTTACAGTCCCACAGGTTAAGTGCTACATGAGCCAACTCTTGAAGGGGCTTCACTATTGTCATGCCAATGGAGTGCTTCATCGAGATATCAAAAGCTCGAATCTTCTTATAAACAATGAAGGCAGTTTGATGCTTGCAGATTTTGGGCTTGCCCGGAACTTTTGGGCGGAAGATTGTCATCAGAATGCTGAGCTTACCAGTCAAGTCGTCACGCTTTGGTATAGACCTCCAGAGTTGCTGCTTGGGGCTACCAAGTATGGTCCGGCTGTTGATATGTGGTCTGCTGGTTGTATCTTCGCTGAGCTTCTATGCCAAGGAAGGCCAATTTTCAATAGTCCAACTGAGGCAGGTGTTATAAGTAAGATTGTTGAGGTTCGTGGAGCTCCAGATGAGGCCAACTGGCCTGGAGTTTCAAAGCTGCCTTTGTATAACACCTTCTTGAGCAAAGCGAAATCGCACCAGAAGCCTCTTAGGCCTCTTAGTGAGATTTTCGGGCATTGTGACCGCCATGCTTTGGAGCTGTTGGAGAAGTTGCTCACTCTTGATCCTTCTAAGAGAATATCTGCCAAGGATGCTTTGGATGCTGACTACTTCTGGACTGATCCATTACCGTGTGATCCGAAAAGTCTGCCCAAAAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

6.76

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 328	8.2e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 257	1.2e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	500, 746, 1033
AarI	CACCTGC	1 cut(s)	728
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	904
AciI	CCGC	4 cut(s)	11, 382, 557, 895
AclWI	GGATC	4 cut(s)	226, 929, 986, 1001
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	904
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	271, 433, 721, 804
AjnI	CCWGG	2 cut(s)	96, 793
Alw21I	GWGCWC	1 cut(s)	775
AlwI	GGATC	4 cut(s)	226, 929, 986, 1001
AoxI	GGCC	6 cut(s)	12, 94, 710, 783, 791, 863
ApeKI	GCWGC	2 cut(s)	628, 808
AsiGI	ACCGGT	1 cut(s)	368
AspS9I	GGNCC	4 cut(s)	13, 138, 355, 650
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	3 cut(s)	138, 355, 650
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	775
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	615, 795
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 1000, 1034
BciT130I	CCWGG	2 cut(s)	98, 795
BcnI	CCSGG	1 cut(s)	544
BfaI	CTAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	862
BisI	GCNGC	3 cut(s)	12, 629, 809
BlpI	GCTNAGC	3 cut(s)	378, 579, 690
BlsI	GCNGC	3 cut(s)	13, 630, 810
Bme1390I	CCNGG	3 cut(s)	98, 544, 795
Bme18I	GGWCC	3 cut(s)	138, 355, 650
BmgT120I	GGNCC	4 cut(s)	13, 138, 355, 650
BmrFI	CCNGG	3 cut(s)	98, 544, 795
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	44, 510, 952, 961
BmuI	ACTGGG	1 cut(s)	297
BpmI	CTGGAG	3 cut(s)	603, 759, 816
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	3 cut(s)	378, 579, 690
Bpu14I	TTCGAA	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	850
BpuMI	CCSGG	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	16, 97, 703, 957
BsaWI	WCCGGW	3 cut(s)	140, 289, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	904
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	303, 588, 794
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	98, 795
BseDI	CCNNGG	4 cut(s)	16, 97, 703, 957
BseGI	GGATG	3 cut(s)	59, 967, 976
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	904
BseMII	CTCAG	3 cut(s)	570, 681, 723
BseNI	ACTGG	3 cut(s)	303, 588, 794
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	615, 795
BshFI	GGCC	6 cut(s)	14, 96, 712, 785, 793, 865
BshTI	ACCGGT	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	5 cut(s)	141, 290, 369, 544, 653
BslFI	GGGAC	3 cut(s)	29, 285, 383
BslI	CCNNNNNNNGG	1 cut(s)	904
BsmFI	GGGAC	3 cut(s)	29, 285, 383
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	6 cut(s)	14, 96, 712, 785, 793, 865
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	104, 775
Bsp143I	GATC	4 cut(s)	231, 934, 991, 1006
Bsp1720I	GCTNAGC	3 cut(s)	378, 579, 690
BspACI	CCGC	4 cut(s)	11, 382, 557, 895
BspANI	GGCC	6 cut(s)	14, 96, 712, 785, 793, 865
BspCNI	CTCAG	3 cut(s)	571, 682, 724
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	4 cut(s)	226, 929, 986, 1001
BspT104I	TTCGAA	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	303, 588, 794
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	4 cut(s)	16, 97, 703, 957
BssMI	GATC	4 cut(s)	231, 934, 991, 1006
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	703, 957
Bst2UI	CCWGG	2 cut(s)	98, 795
Bst4CI	ACNGT	2 cut(s)	397, 1002
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	174, 384, 525, 540
BstDEI	CTNAG	8 cut(s)	126, 378, 579, 690, 732, 860, 869, 942
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	59, 967, 976
BstKTI	GATC	4 cut(s)	234, 937, 994, 1009
BstMBI	GATC	4 cut(s)	231, 934, 991, 1006
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 108, 383, 420, 853, 862, 962, 971
BstNI	CCWGG	2 cut(s)	98, 795
BstSCI	CCNGG	3 cut(s)	96, 542, 793
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	615, 795
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	6 cut(s)	14, 96, 712, 785, 793, 865
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	59, 967, 976
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	4 cut(s)	174, 384, 525, 540
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	4 cut(s)	13, 138, 355, 650
CseI	GACGC	1 cut(s)	52
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	6 cut(s)	322, 352, 359, 418, 452, 899
DdeI	CTNAG	8 cut(s)	126, 378, 579, 690, 732, 860, 869, 942
DpnI	GATC	4 cut(s)	233, 936, 993, 1008
DpnII	GATC	4 cut(s)	231, 934, 991, 1006
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	773
Eco130I	CCWWGG	2 cut(s)	703, 957
Eco147I	AGGCCT	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	138, 355, 650
Eco53kI	GAGCTC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	96, 793
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	703, 957
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	2 cut(s)	703, 957
FaeI	CATG	6 cut(s)	325, 355, 362, 421, 455, 902
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 185, 217
FaqI	GGGAC	3 cut(s)	29, 285, 383
FatI	CATG	6 cut(s)	321, 351, 358, 417, 451, 898
FauI	CCCGC	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	12, 629, 809
FokI	GGATG	3 cut(s)	66, 974, 983
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	3 cut(s)	12, 629, 809
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	3 cut(s)	12, 629, 809
GsuI	CTGGAG	3 cut(s)	603, 759, 816
HaeIII	GGCC	6 cut(s)	14, 96, 712, 785, 793, 865
HapII	CCGG	5 cut(s)	141, 290, 369, 544, 653
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	6 cut(s)	325, 355, 362, 421, 455, 902
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	3 cut(s)	68, 79, 490
HpaII	CCGG	5 cut(s)	141, 290, 369, 544, 653
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	84, 573, 1011
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	38, 53, 68
HpyAV	CCTTC	9 cut(s)	82, 187, 191, 265, 427, 503, 702, 835, 948
HpyCH4III	ACNGT	2 cut(s)	397, 1002
HpyCH4V	TGCA	4 cut(s)	57, 215, 295, 527
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 108, 383, 420, 853, 862, 962, 971
HpyF3I	CTNAG	8 cut(s)	126, 378, 579, 690, 732, 860, 869, 942
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	325, 355, 362, 421, 455, 902
Kzo9I	GATC	4 cut(s)	231, 934, 991, 1006
LmnI	GCTCC	3 cut(s)	770, 778, 907
Lsp1109I	GCAGC	2 cut(s)	615, 795
LweI	GCATC	4 cut(s)	44, 510, 952, 961
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	280, 317, 598, 890
MalI	GATC	4 cut(s)	233, 936, 993, 1008
MboI	GATC	4 cut(s)	231, 934, 991, 1006
MboII	GAAGA	5 cut(s)	50, 239, 485, 572, 676
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	104, 775
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	184, 714
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	752, 894
MnlI	CCTC	7 cut(s)	53, 627, 727, 754, 775, 867, 876
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	4 cut(s)	335, 456, 573, 1000
Msp20I	TGGCCA	1 cut(s)	96
MspI	CCGG	5 cut(s)	141, 290, 369, 544, 653
MspR9I	CCNGG	3 cut(s)	98, 544, 795
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	98, 795
MwoI	GCNNNNNNNGC	8 cut(s)	11, 108, 383, 420, 853, 862, 962, 971
NciI	CCSGG	1 cut(s)	544
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	4 cut(s)	231, 934, 991, 1006
NlaIII	CATG	6 cut(s)	325, 355, 362, 421, 455, 902
NmuCI	GTSAC	4 cut(s)	280, 317, 598, 890
NspV	TTCGAA	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	728
PceI	AGGCCT	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	3 cut(s)	68, 79, 490
PflMI	CCANNNNNTGG	1 cut(s)	904
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	13, 630, 810
PsiI	TTATAA	3 cut(s)	500, 746, 1033
Psp124BI	GAGCTC	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	96, 793
PspGI	CCWGG	2 cut(s)	96, 793
PspPI	GGNCC	4 cut(s)	13, 138, 355, 650
PsuI	RGATCY	1 cut(s)	231
RseI	CAYNNNNRTG	4 cut(s)	335, 456, 573, 1000
SacI	GAGCTC	1 cut(s)	775
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	3 cut(s)	12, 629, 809
Sau3AI	GATC	4 cut(s)	231, 934, 991, 1006
Sau96I	GGNCC	4 cut(s)	13, 138, 355, 650
ScrFI	CCNGG	3 cut(s)	98, 544, 795
SduI	GDGCHC	2 cut(s)	104, 775
SfaNI	GCATC	4 cut(s)	44, 510, 952, 961
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	3 cut(s)	138, 355, 650
SmiMI	CAYNNNNRTG	4 cut(s)	335, 456, 573, 1000
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	2 cut(s)	184, 714
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	4 cut(s)	11, 382, 557, 895
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	775
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	3 cut(s)	96, 542, 793
StyI	CCWWGG	2 cut(s)	703, 957
TaaI	ACNGT	2 cut(s)	397, 1002
TaqI	TCGA	6 cut(s)	33, 66, 75, 345, 472, 488
TasI	AATT	2 cut(s)	184, 714
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	68, 79, 490
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	4 cut(s)	280, 317, 598, 890
TseI	GCWGC	2 cut(s)	628, 808
Tsp45I	GTSAC	4 cut(s)	280, 317, 598, 890
TspDTI	ATGAA	2 cut(s)	458, 522
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	3 cut(s)	138, 355, 650
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 964
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.