Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Forward (+)

4254854 .. 4255444

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTGTTTGAATACATGGACCATGATTTGACAGGTCTAGCTAATCAGGCGAGATTTTCAGTCCCACGTACAGTTAAGTGCTACATGAGCCAACTGTTGAAGGGGCTTCACTATTGTCATGCAAGTGGAGTACTTCATCGTAATATCAAAAGCTCAAATCTTCTTATAAACAATGAGGGGAATTTGAAGCCTGGAGACTTTGGACATGCAAGGACCTTTTCATCGAAAGATCATCACAATGCCAAGCTCACAAATCAAGTCGTCACGCATTGGTATAGACCTCCAGAGTTGCTTCTTGGGGCTACCAAGTATGGTCGAGCTGGTGATATGTGTTCTGCTGGATGTATGTTTGCTGAGCTTCATTGCTGCGGCAAGCCAGTTTTCAATGGTAAAACTGAGGCAGATGTTTTGACTAAGACTGTTGAGGTGTGTGGAGCTCCAGATGAGGTCAACTGGCCTGAAGTTTCAAGGCTTCCTTGGTTTAACAGATTCGACTTCAAGCAAATGAAAGCGCGAAAGAGGCCTCTTAGTGAGACTTTTAGACATTCTGATCGCCATTTTGGACTTGTTGGGGAGACTGCCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

196

Amino Acids

22.2

Weight (kDa)

8.97

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 157	3.3e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 142	2.9e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccII	CGCG	1 cut(s)	514
AciI	CCGC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	2 cut(s)	70, 132
AgsI	TTSAA	6 cut(s)	11, 100, 187, 385, 468, 499
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	6 cut(s)	41, 153, 247, 320, 358, 437
AluI	AGCT	6 cut(s)	41, 153, 247, 320, 358, 437
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	189, 527, 569
AoxI	GGCC	2 cut(s)	455, 521
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	19, 213
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	19, 213
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	189, 527, 569
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	367, 370
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	368, 371
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	2 cut(s)	19, 213
BmgT120I	GGNCC	2 cut(s)	19, 213
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	3 cut(s)	213, 267, 423
Bpu1102I	GCTNAGC	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	377, 458
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	345, 387
BseNI	ACTGG	2 cut(s)	377, 458
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	457, 523
BsiHKAI	GWGCWC	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	3 cut(s)	189, 527, 569
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	457, 523
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	229, 550
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	457, 523
BspCNI	CTCAG	2 cut(s)	346, 388
BspFNI	CGCG	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	377, 458
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	2 cut(s)	229, 550
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	73, 96, 421
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	4 cut(s)	354, 396, 414, 527
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	232, 553
BstMAI	GTCTC	3 cut(s)	189, 527, 569
BstMBI	GATC	2 cut(s)	229, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 87, 520
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	457, 523
BtsCI	GGATG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	19, 213
Csp6I	GTAC	2 cut(s)	69, 131
CviAII	CATG	5 cut(s)	16, 23, 85, 119, 206
CviQI	GTAC	2 cut(s)	69, 131
DdeI	CTNAG	4 cut(s)	354, 396, 414, 527
DpnI	GATC	2 cut(s)	231, 552
DpnII	GATC	2 cut(s)	229, 550
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	19, 213
Eco53kI	GAGCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	5 cut(s)	19, 26, 88, 122, 209
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	15, 22, 84, 118, 205
Fnu4HI	GCNGC	2 cut(s)	367, 370
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	367, 370
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	367, 370
GsuI	CTGGAG	3 cut(s)	213, 267, 423
HaeIII	GGCC	2 cut(s)	457, 523
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	19, 26, 88, 122, 209
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	1 cut(s)	489
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	284, 440, 588
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	3 cut(s)	73, 96, 421
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	122, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 87, 520
HpyF3I	CTNAG	4 cut(s)	354, 396, 414, 527
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	19, 26, 88, 122, 209
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	2 cut(s)	229, 550
LmnI	GCTCC	2 cut(s)	434, 442
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	231, 552
MboI	GATC	2 cut(s)	229, 550
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	1 cut(s)	181
MnlI	CCTC	7 cut(s)	169, 291, 391, 418, 439, 513, 534
MseI	TTAA	2 cut(s)	75, 483
MslI	CAYNNNNRTG	2 cut(s)	123, 237
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	47, 87, 520
NdeII	GATC	2 cut(s)	229, 550
NlaIII	CATG	5 cut(s)	19, 26, 88, 122, 209
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	368, 371
Ppu21I	YACGTR	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	19, 213
PspPPI	RGGWCCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	70, 132
RsaNI	GTAC	2 cut(s)	69, 131
RseI	CAYNNNNRTG	2 cut(s)	123, 237
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	75, 483
SatI	GCNGC	2 cut(s)	367, 370
Sau3AI	GATC	2 cut(s)	229, 550
Sau96I	GGNCC	2 cut(s)	19, 213
ScaI	AGTACT	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	439
SinI	GGWCC	2 cut(s)	19, 213
SmiMI	CAYNNNNRTG	2 cut(s)	123, 237
Sse9I	AATT	1 cut(s)	181
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	3 cut(s)	73, 96, 421
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	224, 316, 492
TasI	AATT	1 cut(s)	181
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	75, 483
Tru9I	TTAA	2 cut(s)	75, 483
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	125, 210, 350, 521
VpaK11BI	GGWCC	2 cut(s)	19, 213
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.