Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Forward (+)

4112583 .. 4113894

Gene Structure 1312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGTACTCCGCCCGACGGATCCAGAGTGGAGTACTTCATCGTAATATCAAAAGCTCAAATCTTCTTATAAACAATGAGGGGAATTTGAAGCTTGGAGACTTTGGGCTTGCAAGGACCTTTTCATCGAAAGATCATCACAATGCCAAGCTCACAAATCAAGTCGTCACGCATTGGTATAGACCTCCAGAGTTGCTTCTTGGGGCTACCAAGTATGGTCGAGCTGGTGATATGTGTTCTGCTGGATGTATGTTTGCTGAGCTTCATTGCTGCGGCAAGCCAGTTTTCAATGGTAAAACTGAGGCAGATGTTTTGACTAAGACTGTTGAGCGCGAAAGAGGCCTCTTAGTGAGACTTTTAGACATTCTGATCGCCATTTTGGACTTGTTGGGGAGACTGCTTACTCTTGATCCTTCTAAGAGAATATATGTCAAGGATGCTCTTGATGCTGACCACTTCTGGACTGATCCATTACCTTGTGATCCAGAAACTCTTCCCCAGTATGTATCAACACATGAGCATGATATAAAGAAGCGTAAGCAGCAGCAGCCATGTGAACCTGAAGAAAATGATGCAAAACATCAGAAACCAGTGCAGTACCAACAGCAACCTCCCCGGGGTATTCCAGTCAGTCACCAGCAATCTCAACAAGCACAAGCCCGACTGCAACCTTACAAGGCCAGCTATAGGTCTCAGCCATCGGTTGCTGCAGGGCTTCGCCACCGTTACGAGGGCAGGCCTCCTTGGCCCTCTGATGGGACAAGAAGATATTATCAGAATGATCGTTCTGCTTCAGATTGGGACTCAAACATGAGGGGTGGAAGCCGCAGTCGGCGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

280

Amino Acids

31.99

Weight (kDa)

9.46

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 151	4.9e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 143	1.9e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccII	CGCG	1 cut(s)	333
AciI	CCGC	3 cut(s)	12, 273, 826
AclWI	GGATC	5 cut(s)	16, 29, 404, 461, 476
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	582, 777
AfaI	GTAC	3 cut(s)	8, 36, 599
AfiI	CCNNNNNNNGG	6 cut(s)	18, 617, 687, 730, 755, 756
AgsI	TTSAA	2 cut(s)	91, 289
AluBI	AGCT	6 cut(s)	57, 94, 151, 224, 262, 684
AluI	AGCT	6 cut(s)	57, 94, 151, 224, 262, 684
Alw26I	GTCTC	4 cut(s)	93, 346, 388, 696
AlwI	GGATC	5 cut(s)	16, 29, 404, 461, 476
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	4 cut(s)	340, 678, 737, 746
ApeKI	GCWGC	5 cut(s)	270, 541, 544, 547, 707
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	117, 747
AsuC2I	CCSGG	2 cut(s)	616, 617
AsuHPI	GGTGA	2 cut(s)	239, 626
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	21
BbvI	GCAGC	5 cut(s)	257, 553, 556, 559, 694
BccI	CCATC	2 cut(s)	706, 749
BcnI	CCSGG	2 cut(s)	616, 617
BcoDI	GTCTC	4 cut(s)	93, 346, 388, 696
BfaI	CTAG	1 cut(s)	841
BfmI	CTRYAG	2 cut(s)	685, 708
BglI	GCCNNNNNGGC	1 cut(s)	745
BisI	GCNGC	7 cut(s)	271, 274, 542, 545, 548, 708, 826
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	7 cut(s)	272, 275, 543, 546, 549, 709, 827
BmcAI	AGTACT	2 cut(s)	8, 36
Bme1390I	CCNGG	2 cut(s)	616, 617
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	117, 747
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	616, 617
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	427, 436, 562
BmuI	ACTGGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	616, 617
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	4 cut(s)	614, 615, 616, 743
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 617, 687, 730, 755, 756
Bse1I	ACTGG	4 cut(s)	281, 499, 590, 626
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	4 cut(s)	614, 615, 616, 743
BseGI	GGATG	2 cut(s)	251, 442
BseLI	CCNNNNNNNGG	6 cut(s)	18, 617, 687, 730, 755, 756
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	249, 291, 707
BseNI	ACTGG	4 cut(s)	281, 499, 590, 626
BseXI	GCAGC	5 cut(s)	257, 553, 556, 559, 694
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	342, 680, 739, 748
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	616
BslFI	GGGAC	2 cut(s)	772, 815
BslI	CCNNNNNNNGG	6 cut(s)	18, 617, 687, 730, 755, 756
BsmAI	GTCTC	4 cut(s)	93, 346, 388, 696
BsmFI	GGGAC	2 cut(s)	772, 815
BsnI	GGCC	4 cut(s)	342, 680, 739, 748
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	615
Bsp143I	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	12, 273, 826
BspANI	GGCC	4 cut(s)	342, 680, 739, 748
BspCNI	CTCAG	3 cut(s)	250, 292, 706
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	5 cut(s)	16, 29, 404, 461, 476
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	4 cut(s)	281, 499, 590, 626
BssECI	CCNNGG	4 cut(s)	614, 615, 616, 743
BssMI	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
BssT1I	CCWWGG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	325, 725
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	4 cut(s)	111, 278, 682, 737
BstDEI	CTNAG	6 cut(s)	258, 300, 318, 346, 417, 693
BstF5I	GGATG	2 cut(s)	251, 442
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	7 cut(s)	24, 136, 372, 412, 469, 484, 784
BstMAI	GTCTC	4 cut(s)	93, 346, 388, 696
BstMBI	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 446, 541, 547, 745
BstSCI	CCNGG	2 cut(s)	614, 615
BstSFI	CTRYAG	2 cut(s)	685, 708
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	5 cut(s)	257, 553, 556, 559, 694
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	342, 680, 739, 748
BtsCI	GGATG	2 cut(s)	251, 442
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	4 cut(s)	111, 278, 682, 737
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	117, 747
Cfr9I	CCCGGG	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	7, 35, 598
CviAII	CATG	4 cut(s)	515, 521, 552, 811
CviQI	GTAC	3 cut(s)	7, 35, 598
DdeI	CTNAG	6 cut(s)	258, 300, 318, 346, 417, 693
DpnI	GATC	7 cut(s)	23, 135, 371, 411, 468, 483, 783
DpnII	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	743
Eco147I	AGGCCT	2 cut(s)	342, 739
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	582, 777
Eco88I	CYCGRG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	4 cut(s)	518, 524, 555, 814
FaqI	GGGAC	2 cut(s)	772, 815
FatI	CATG	4 cut(s)	514, 520, 551, 810
Fnu4HI	GCNGC	7 cut(s)	271, 274, 542, 545, 548, 708, 826
FokI	GGATG	2 cut(s)	258, 449
Fsp4HI	GCNGC	7 cut(s)	271, 274, 542, 545, 548, 708, 826
FspBI	CTAG	1 cut(s)	841
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	7 cut(s)	271, 274, 542, 545, 548, 708, 826
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	342, 680, 739, 748
HapII	CCGG	1 cut(s)	616
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	518, 524, 555, 814
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	803
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	2 cut(s)	239, 626
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	5 cut(s)	369, 585, 754, 777, 796
Hpy188III	TCNNGA	6 cut(s)	25, 188, 407, 443, 460, 485
Hpy8I	GTNNAC	1 cut(s)	557
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	2 cut(s)	325, 725
HpyCH4V	TGCA	5 cut(s)	113, 575, 595, 667, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 446, 541, 547, 745
HpyF3I	CTNAG	6 cut(s)	258, 300, 318, 346, 417, 693
Hsp92II	CATG	4 cut(s)	518, 524, 555, 814
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
Lsp1109I	GCAGC	5 cut(s)	257, 553, 556, 559, 694
LweI	GCATC	3 cut(s)	427, 436, 562
MaeI	CTAG	1 cut(s)	841
MaeIII	GTNAC	4 cut(s)	166, 632, 725, 836
MalI	GATC	7 cut(s)	23, 135, 371, 411, 468, 483, 783
MboI	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
MboII	GAAGA	4 cut(s)	56, 485, 575, 777
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	141, 519
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	616, 617
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	339, 446, 541, 547, 745
NciI	CCSGG	2 cut(s)	616, 617
NdeII	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
NlaIII	CATG	4 cut(s)	518, 524, 555, 814
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	166, 632
PceI	AGGCCT	2 cut(s)	342, 739
PdmI	GAANNNNTTC	1 cut(s)	492
PkrI	GCNGC	7 cut(s)	272, 275, 543, 546, 549, 709, 827
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PpuMI	RGGWCCY	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	117, 747
PspPPI	RGGWCCY	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	3 cut(s)	8, 36, 599
RsaNI	GTAC	3 cut(s)	7, 35, 598
RseI	CAYNNNNRTG	2 cut(s)	141, 519
SatI	GCNGC	7 cut(s)	271, 274, 542, 545, 548, 708, 826
Sau3AI	GATC	7 cut(s)	21, 133, 369, 409, 466, 481, 781
Sau96I	GGNCC	2 cut(s)	117, 747
ScaI	AGTACT	2 cut(s)	8, 36
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	616, 617
SfaNI	GCATC	3 cut(s)	427, 436, 562
SfcI	CTRYAG	2 cut(s)	685, 708
SfiI	GGCCNNNNNGGCC	1 cut(s)	745
SinI	GGWCC	1 cut(s)	117
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	141, 519
Sse9I	AATT	1 cut(s)	85
SseBI	AGGCCT	2 cut(s)	342, 739
SsiI	CCGC	3 cut(s)	12, 273, 826
SspMI	CTAG	1 cut(s)	841
StuI	AGGCCT	2 cut(s)	342, 739
StyD4I	CCNGG	2 cut(s)	614, 615
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	2 cut(s)	325, 725
TaqI	TCGA	2 cut(s)	128, 220
TasI	AATT	1 cut(s)	85
TatI	WGTACW	2 cut(s)	6, 34
TauI	GCSGC	2 cut(s)	276, 828
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	166, 632
TseI	GCWGC	5 cut(s)	270, 541, 544, 547, 707
Tsp45I	GTSAC	2 cut(s)	166, 632
TspDTI	ATGAA	4 cut(s)	17, 29, 114, 254
TspGWI	ACGGA	1 cut(s)	34
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	85
XmaI	CCCGGG	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	841
ZrmI	AGTACT	2 cut(s)	8, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.