Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Reverse (-)

90172071 .. 90172769

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTATGTTTGCTACTTTGCTGAGCTTCATTGCTGCGGCAAGCCAGTTTTCAACGGTAAAACTGAGGCAGTTGTTTTGACTAAGACTGTTGAGCGCGAAAGAGGCCTCTTAGTGAGACTTTTAGACATTCTGATCGCCATTTTGGACTTGTTGGGGAGACTGCTTACTCTTGATCCTTCTAAGAGAATATATGTCAAGGATGCTCTTGATGCTGACTACTTCTGGACTGATCCATTACCTTGTGATCCAGAAACTCTTCCCCAGTATGTATCAACACATGAGCATGATATAAAGAAAGCTCATCAGCAATCTCAACAAGCACAAGCCCGAGTGCAACCTTACAAGGCCAGCTATAGGTCTCAGCCATCGGTTGCTGCAGGGCTTCGCCATCGTTATGAGGGCAGGCCTCCTTGGCCCTCTGATGGGACAAGAAAATATTATCAGAATGATCGTTCTGCTTCAGATTGGGACTCAAACATGAGGGGTGGAAGCCGCAGTCGGCGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

169

Amino Acids

19.49

Weight (kDa)

9.03

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	36, 493
AclWI	GGATC	3 cut(s)	167, 224, 239
AcuI	CTGAAG	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	354, 422, 423
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	3 cut(s)	25, 299, 351
AluI	AGCT	3 cut(s)	25, 299, 351
Alw26I	GTCTC	3 cut(s)	109, 151, 363
AlwI	GGATC	3 cut(s)	167, 224, 239
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	4 cut(s)	103, 345, 404, 413
ApeKI	GCWGC	2 cut(s)	33, 374
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	20, 361
BccI	CCATC	3 cut(s)	373, 396, 416
BcoDI	GTCTC	3 cut(s)	109, 151, 363
BfaI	CTAG	1 cut(s)	508
BfmI	CTRYAG	2 cut(s)	352, 375
BglI	GCCNNNNNGGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	34, 37, 375, 493
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	4 cut(s)	35, 38, 376, 494
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	190, 199
BmuI	ACTGGG	1 cut(s)	256
Bpu1102I	GCTNAGC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 422, 423
Bse1I	ACTGG	2 cut(s)	44, 262
Bse3DI	GCAATG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	3 cut(s)	354, 422, 423
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	12, 54, 374
BseNI	ACTGG	2 cut(s)	44, 262
BseXI	GCAGC	2 cut(s)	20, 361
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	105, 347, 406, 415
BsiHKCI	CYCGRG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	439, 482
BslI	CCNNNNNNNGG	3 cut(s)	354, 422, 423
BsmAI	GTCTC	3 cut(s)	109, 151, 363
BsmFI	GGGAC	2 cut(s)	439, 482
BsnI	GGCC	4 cut(s)	105, 347, 406, 415
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	132, 172, 229, 244, 448
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	36, 493
BspANI	GGCC	4 cut(s)	105, 347, 406, 415
BspCNI	CTCAG	3 cut(s)	13, 55, 373
BspFNI	CGCG	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	3 cut(s)	167, 224, 239
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	44, 262
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	132, 172, 229, 244, 448
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	56, 88
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	41, 349, 404
BstDEI	CTNAG	6 cut(s)	21, 63, 81, 109, 180, 360
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	5 cut(s)	135, 175, 232, 247, 451
BstMAI	GTCTC	3 cut(s)	109, 151, 363
BstMBI	GATC	5 cut(s)	132, 172, 229, 244, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 209, 412
BstSFI	CTRYAG	2 cut(s)	352, 375
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	20, 361
BsuRI	GGCC	4 cut(s)	105, 347, 406, 415
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	41, 349, 404
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	414
CviAII	CATG	3 cut(s)	278, 284, 478
DdeI	CTNAG	6 cut(s)	21, 63, 81, 109, 180, 360
DpnI	GATC	5 cut(s)	134, 174, 231, 246, 450
DpnII	GATC	5 cut(s)	132, 172, 229, 244, 448
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	2 cut(s)	105, 406
Eco31I	GGTCTC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	281, 287, 481
FaqI	GGGAC	2 cut(s)	439, 482
FatI	CATG	3 cut(s)	277, 283, 477
Fnu4HI	GCNGC	4 cut(s)	34, 37, 375, 493
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	34, 37, 375, 493
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	34, 37, 375, 493
HaeIII	GGCC	4 cut(s)	105, 347, 406, 415
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	281, 287, 481
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	470
Hpy188I	TCNGA	4 cut(s)	132, 421, 444, 463
Hpy188III	TCNNGA	4 cut(s)	170, 206, 223, 248
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	56, 88
HpyCH4V	TGCA	2 cut(s)	334, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 209, 412
HpyF3I	CTNAG	6 cut(s)	21, 63, 81, 109, 180, 360
Hsp92II	CATG	3 cut(s)	281, 287, 481
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	132, 172, 229, 244, 448
LpnPI	CCDG	7 cut(s)	57, 208, 261, 275, 361, 363, 388
Lsp1109I	GCAGC	2 cut(s)	20, 361
LweI	GCATC	2 cut(s)	190, 199
MaeI	CTAG	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	5 cut(s)	134, 174, 231, 246, 450
MboI	GATC	5 cut(s)	132, 172, 229, 244, 448
MboII	GAAGA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	7 cut(s)	58, 95, 116, 391, 417, 427, 474
MroXI	GAANNNNTTC	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	282, 393
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	102, 209, 412
NdeII	GATC	5 cut(s)	132, 172, 229, 244, 448
NlaIII	CATG	3 cut(s)	281, 287, 481
PceI	AGGCCT	2 cut(s)	105, 406
PdmI	GAANNNNTTC	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	35, 38, 376, 494
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	282, 393
SatI	GCNGC	4 cut(s)	34, 37, 375, 493
Sau3AI	GATC	5 cut(s)	132, 172, 229, 244, 448
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	464
SetI	ASST	6 cut(s)	27, 241, 301, 340, 353, 359
SfaNI	GCATC	2 cut(s)	190, 199
SfcI	CTRYAG	2 cut(s)	352, 375
SfiI	GGCCNNNNNGGCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	282, 393
SseBI	AGGCCT	2 cut(s)	105, 406
SsiI	CCGC	2 cut(s)	36, 493
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	1 cut(s)	508
StuI	AGGCCT	2 cut(s)	105, 406
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	56, 88
TauI	GCSGC	2 cut(s)	39, 495
TseI	GCWGC	2 cut(s)	33, 374
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.