Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357761.1

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1054

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ctgcgacttcttggccagggcacttatggcgaagtttctctggctaaagaaaaaaggaccggagaaattgtggctttaaagaaactgaagctgggaaaggagaattatgagaaggaaggcttccccattaatgcaataagagaaatcaagatcctgagtaagcttcgtcacgaaaatgtgatcaagttgaaggagattgtgacatctccggtgcgaattccgggtcatgatgccggcgacatctgtatggtgtttgaatacatggaccatgacttgacaggcctagttaatcgggtgagattttcagtcccacaggttaagtgctacatgagccaactcttgaaggggcttcactactgccatgccaatggagtgcttcatcgagatatcaaaagctcgaatcttcttataaacaatgaaggcagtttgaagcttggagattttgggcttgcccggaaagattatcaaaatgccaagcttaccaatcaagttgtcacgcattggtatagacctccagagttgcttcttggggctaccaagtatggtcccgctgttgatatgtggtctgctggatgtatctttgctgagcttctatgccacggccggccaattttcaatggtaaaacagaggctgatgttatgaaaaagattgtcgaggtgtgtggagttccagatgaggtcaactggcctggagtttcagagcttcctttgtataacacattcttgaaggcaatgaaacctcagcagaggcctcttcggcctcttagtgagactttcagacactgtgacagccatgctttggagttgttggagaaattgcttactcttgatccttctaaaagaatatctgccaaggatgctctagatgctgactacttctggactgatccattaccttgtgatccgaaaagtctacccaaatatgagtcatcacatgagcttgatatacaaaagcgtaagcagcagccattgcaagatgaggaaaatgctgcaaagcgtcagaaaccggtgcagtacaaacagcaacatccccgcggcattccaacacctagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

351

Amino Acids

39.84

Weight (kDa)

8.92

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	913
AccII	CGCG	1 cut(s)	1035
AciI	CCGC	3 cut(s)	549, 1033, 1035
AclWI	GGATC	4 cut(s)	145, 824, 881, 896
AcoI	YGGCCR	3 cut(s)	13, 601, 605
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	1016
AfiI	CCNNNNNNNGG	1 cut(s)	799
AgeI	ACCGGT	1 cut(s)	1006
AgsI	TTSAA	6 cut(s)	190, 257, 343, 430, 616, 727
AjnI	CCWGG	2 cut(s)	15, 688
AluBI	AGCT	8 cut(s)	91, 163, 396, 433, 478, 589, 703, 940
AluI	AGCT	8 cut(s)	91, 163, 396, 433, 478, 589, 703, 940
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	4 cut(s)	145, 824, 881, 896
AlwNI	CAGNNNCTG	2 cut(s)	632, 783
AoxI	GGCC	7 cut(s)	13, 280, 601, 605, 686, 749, 758
ApeKI	GCWGC	3 cut(s)	961, 964, 989
ApoI	RAATTY	1 cut(s)	216
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	1006
AspS9I	GGNCC	3 cut(s)	57, 265, 545
AsuC2I	CCSGG	2 cut(s)	222, 454
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	57, 265, 545
BaeGI	GKGCMC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	973, 976, 976
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	2 cut(s)	17, 690
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	222, 454
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	3 cut(s)	284, 863, 1050
BglI	GCCNNNNNGGC	1 cut(s)	757
BisI	GCNGC	4 cut(s)	962, 965, 990, 1036
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	4 cut(s)	963, 966, 991, 1037
Bme1390I	CCNGG	4 cut(s)	17, 222, 454, 690
Bme18I	GGWCC	3 cut(s)	57, 265, 545
BmgT120I	GGNCC	3 cut(s)	57, 265, 545
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	4 cut(s)	17, 222, 454, 690
BmsI	GCATC	3 cut(s)	220, 847, 856
BpmI	CTGGAG	2 cut(s)	498, 711
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	222, 454
BsaJI	CCNNGG	4 cut(s)	16, 598, 852, 1033
BsaWI	WCCGGW	3 cut(s)	59, 208, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse118I	RCCGGY	3 cut(s)	233, 603, 1006
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	738, 968
BseBI	CCWGG	2 cut(s)	17, 690
BseDI	CCNNGG	4 cut(s)	16, 598, 852, 1033
BseGI	GGATG	3 cut(s)	578, 862, 1027
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMI	GCAATG	2 cut(s)	738, 968
BseMII	CTCAG	3 cut(s)	146, 576, 755
BseNI	ACTGG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	601
BseXI	GCAGC	3 cut(s)	973, 976, 976
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	1031
Bsh1236I	CGCG	1 cut(s)	1035
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	7 cut(s)	15, 282, 603, 607, 688, 751, 760
BshTI	ACCGGT	1 cut(s)	1006
BsiEI	CGRYCG	1 cut(s)	604
BsiSI	CCGG	7 cut(s)	60, 209, 221, 234, 454, 604, 1007
BslFI	GGGAC	2 cut(s)	293, 531
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	2 cut(s)	293, 531
BsmI	GAATGC	1 cut(s)	1038
BsnI	GGCC	7 cut(s)	15, 282, 603, 607, 688, 751, 760
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	150, 180, 829, 886, 901
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	549, 1033, 1035
BspANI	GGCC	7 cut(s)	15, 282, 603, 607, 688, 751, 760
BspCNI	CTCAG	3 cut(s)	147, 577, 754
BspFNI	CGCG	1 cut(s)	1035
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	4 cut(s)	145, 824, 881, 896
BsrDI	GCAATG	2 cut(s)	738, 968
BsrFI	RCCGGY	3 cut(s)	233, 603, 1006
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	3 cut(s)	233, 603, 1006
BssECI	CCNNGG	4 cut(s)	16, 598, 852, 1033
BssMI	GATC	5 cut(s)	150, 180, 829, 886, 901
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	2 cut(s)	17, 690
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	970
BstC8I	GCNNGC	3 cut(s)	235, 450, 605
BstDEI	CTNAG	4 cut(s)	155, 585, 741, 764
BstDSI	CCRYGG	2 cut(s)	598, 1033
BstF5I	GGATG	3 cut(s)	578, 862, 1027
BstFNI	CGCG	1 cut(s)	1035
BstKTI	GATC	5 cut(s)	153, 183, 832, 889, 904
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	5 cut(s)	150, 180, 829, 886, 901
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 330, 757, 857, 866, 961, 970
BstNI	CCWGG	2 cut(s)	17, 690
BstSCI	CCNGG	4 cut(s)	15, 220, 452, 688
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	1035
BstV1I	GCAGC	3 cut(s)	973, 976, 976
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	601
BsuRI	GGCC	7 cut(s)	15, 282, 603, 607, 688, 751, 760
BtgI	CCRYGG	2 cut(s)	598, 1033
BtsCI	GGATG	3 cut(s)	578, 862, 1027
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	3 cut(s)	235, 450, 605
CaiI	CAGNNNCTG	2 cut(s)	632, 783
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	3 cut(s)	233, 603, 1006
Cfr13I	GGNCC	3 cut(s)	57, 265, 545
Cfr42I	CCGCGG	1 cut(s)	1036
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	1 cut(s)	1015
CspAI	ACCGGT	1 cut(s)	1006
CviAII	CATG	7 cut(s)	227, 262, 269, 328, 362, 794, 935
CviQI	GTAC	1 cut(s)	1015
DdeI	CTNAG	4 cut(s)	155, 585, 741, 764
DpnI	GATC	5 cut(s)	152, 182, 831, 888, 903
DpnII	GATC	5 cut(s)	150, 180, 829, 886, 901
DraI	TTTAAA	1 cut(s)	78
EaeI	YGGCCR	3 cut(s)	13, 601, 605
EagI	CGGCCG	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
EclXI	CGGCCG	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	852
Eco147I	AGGCCT	2 cut(s)	282, 751
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	57, 265, 545
Eco52I	CGGCCG	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	15, 688
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	7 cut(s)	230, 265, 272, 331, 365, 797, 938
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	293, 531
FatI	CATG	7 cut(s)	226, 261, 268, 327, 361, 793, 934
FauI	CCCGC	2 cut(s)	556, 1040
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	913
Fnu4HI	GCNGC	4 cut(s)	962, 965, 990, 1036
FokI	GGATG	3 cut(s)	585, 869, 1014
FseI	GGCCGGCC	1 cut(s)	607
Fsp4HI	GCNGC	4 cut(s)	962, 965, 990, 1036
FspBI	CTAG	3 cut(s)	284, 863, 1050
GluI	GCNGC	4 cut(s)	962, 965, 990, 1036
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	2 cut(s)	498, 711
HaeIII	GGCC	7 cut(s)	15, 282, 603, 607, 688, 751, 760
HapII	CCGG	7 cut(s)	60, 209, 221, 234, 454, 604, 1007
HgaI	GACGC	1 cut(s)	986
Hin1II	CATG	7 cut(s)	230, 265, 272, 331, 365, 797, 938
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	3 cut(s)	161, 431, 476
HinfI	GANTC	2 cut(s)	400, 926
HpaII	CCGG	7 cut(s)	60, 209, 221, 234, 454, 604, 1007
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	682, 914
Hpy188I	TCNGA	4 cut(s)	700, 779, 906, 1002
Hpy8I	GTNNAC	2 cut(s)	682, 914
HpyAV	CCTTC	7 cut(s)	106, 110, 184, 337, 413, 721, 843
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4V	TGCA	4 cut(s)	134, 973, 992, 1012
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 330, 757, 857, 866, 961, 970
HpyF3I	CTNAG	4 cut(s)	155, 585, 741, 764
Hsp92II	CATG	7 cut(s)	230, 265, 272, 331, 365, 797, 938
KroI	GCCGGC	2 cut(s)	233, 603
KroNI	GCCGGC	2 cut(s)	235, 605
Ksp22I	TGATCA	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	1036
Kzo9I	GATC	5 cut(s)	150, 180, 829, 886, 901
Lsp1109I	GCAGC	3 cut(s)	973, 976, 976
LweI	GCATC	3 cut(s)	220, 847, 856
MaeI	CTAG	3 cut(s)	284, 863, 1050
MaeIII	GTNAC	4 cut(s)	167, 199, 493, 785
MalI	GATC	5 cut(s)	152, 182, 831, 888, 903
MboI	GATC	5 cut(s)	150, 180, 829, 886, 901
MboII	GAAGA	2 cut(s)	395, 746
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	5 cut(s)	66, 103, 216, 609, 815
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	9 cut(s)	522, 622, 649, 670, 741, 750, 762, 771, 973
Mox20I	TGGCCA	1 cut(s)	15
MroNI	GCCGGC	2 cut(s)	233, 603
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	4 cut(s)	77, 129, 288, 318
MslI	CAYNNNNRTG	3 cut(s)	174, 245, 366
Msp20I	TGGCCA	1 cut(s)	15
MspA1I	CMGCKG	2 cut(s)	551, 1035
MspI	CCGG	7 cut(s)	60, 209, 221, 234, 454, 604, 1007
MspR9I	CCNGG	4 cut(s)	17, 222, 454, 690
Mva1269I	GAATGC	1 cut(s)	1038
MvaI	CCWGG	2 cut(s)	17, 690
MvnI	CGCG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	7 cut(s)	27, 330, 757, 857, 866, 961, 970
NaeI	GCCGGC	2 cut(s)	235, 605
NciI	CCSGG	2 cut(s)	222, 454
NdeII	GATC	5 cut(s)	150, 180, 829, 886, 901
NgoMIV	GCCGGC	2 cut(s)	233, 603
NlaIII	CATG	7 cut(s)	230, 265, 272, 331, 365, 797, 938
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	4 cut(s)	167, 199, 493, 785
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	2 cut(s)	282, 751
PctI	GAATGC	1 cut(s)	1038
PdiI	GCCGGC	2 cut(s)	235, 605
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	799
PinAI	ACCGGT	1 cut(s)	1006
PkrI	GCNGC	4 cut(s)	963, 966, 991, 1037
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PshBI	ATTAAT	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	15, 688
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	15, 688
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	3 cut(s)	57, 265, 545
PstNI	CAGNNNCTG	2 cut(s)	632, 783
PsuI	RGATCY	1 cut(s)	150
RigI	GGCCGGCC	1 cut(s)	607
RsaI	GTAC	1 cut(s)	1016
RsaNI	GTAC	1 cut(s)	1015
RseI	CAYNNNNRTG	3 cut(s)	174, 245, 366
SacII	CCGCGG	1 cut(s)	1036
SaqAI	TTAA	4 cut(s)	77, 129, 288, 318
SatI	GCNGC	4 cut(s)	962, 965, 990, 1036
Sau3AI	GATC	5 cut(s)	150, 180, 829, 886, 901
Sau96I	GGNCC	3 cut(s)	57, 265, 545
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	4 cut(s)	17, 222, 454, 690
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	220, 847, 856
SfiI	GGCCNNNNNGGCC	1 cut(s)	757
Sfr303I	CCGCGG	1 cut(s)	1036
SgrBI	CCGCGG	1 cut(s)	1036
SinI	GGWCC	3 cut(s)	57, 265, 545
SmiMI	CAYNNNNRTG	3 cut(s)	174, 245, 366
Sse9I	AATT	5 cut(s)	66, 103, 216, 609, 815
SseBI	AGGCCT	2 cut(s)	282, 751
SsiI	CCGC	3 cut(s)	549, 1033, 1035
SspMI	CTAG	3 cut(s)	284, 863, 1050
StuI	AGGCCT	2 cut(s)	282, 751
StyD4I	CCNGG	4 cut(s)	15, 220, 452, 688
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	1 cut(s)	785
TaqI	TCGA	3 cut(s)	382, 398, 654
TasI	AATT	5 cut(s)	66, 103, 216, 609, 815
TatI	WGTACW	1 cut(s)	1014
TauI	GCSGC	1 cut(s)	1038
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	4 cut(s)	77, 129, 288, 318
Tru9I	TTAA	4 cut(s)	77, 129, 288, 318
TscAI	CASTG	1 cut(s)	788
TseFI	GTSAC	4 cut(s)	167, 199, 493, 785
TseI	GCWGC	3 cut(s)	961, 964, 989
Tsp45I	GTSAC	4 cut(s)	167, 199, 493, 785
TspDTI	ATGAA	4 cut(s)	368, 432, 656, 749
TspRI	CASTG	1 cut(s)	788
Van91I	CCANNNNNTGG	1 cut(s)	799
VpaK11BI	GGWCC	3 cut(s)	57, 265, 545
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	216
XbaI	TCTAGA	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	913
XspI	CTAG	3 cut(s)	284, 863, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.