Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013639

Physical Location & Seq

Genomic Coordinates Forward (+)

5114925 .. 5116319

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAAAGCAAGAATTACTCCAAGCATTTCAATAGATAATTGTGCACCCTGGGCAGTAGTAGCCGCCCCTGGGCAGCTCAATTTCGATGAAGTCCGCCCGGCAGATCCAGAGGTTTCGAATCTTTTGAGAAATTGCAACTTCTTGGCCAGGGCATGCACTTATGGCGAAGTGAGGTTGTCAGTTTTGACATCTCCAAGTCATGATGCTGGTGACATCTATATGGTGTTTGAATACATGGACCATGATTTGACAGGTCTAGCTAATCAGGCGAGATTTTCAGTCCCACGTACAGTTAAGTGCTACATGAGCCAACTGTTGAAGGGGCTTCACTATTGTCATGCAAGTGGAGTACTTCATCGTAATATCAAAAGCTCAAATCTTCTTAAAAACAATGAGGGGAATTTGAAGCTTGGAGACTTTGGGCTTGCAAGGACCTTTTCATCGAAAGATCATCACAATGCCAAGCTCACAAATCAAGTCGTCACGCATTGGTATAGATCTCCAGAGTTGCTTCTTGGGGCTACCAAGTATGGTCGAGCTGGTGATATGTGTTCTGCTGGATGTATGTTTGCTGAGCTTCATTGCTGCGGCAAGCCAGTTTTCAATGGTAAAACTGAGGCAGATGTTTTGACTAAGACTGTTGAGCGCGAAAGAGGCCTCTTAGTGAGACTTTTAGACATTCTGATCGCAATTTTGGACTTGTTGGGGAGACTGCTTACTCTTGATCCTTCTAAGAGAATATATGTCAAGGATGCTCTTGATGCTGACTACTTCTGGACTGATCCATTACCTTGTGATCCAGAAAGTCTTCCCCAGTATGTATCAACACATGAGCATGATATAAAGAAGCGTAAGCAGCAGCAGCCATGCGAACCTGAAGAAAATGATGCAAAACATCAGAAACCAGTGCAGTACCAACAGCAACCTCCCCGGGGCATTCCAGTCAGTCATCAGCAATCTCAACAAGCACAAGCCCGACTGCAACCTTACAAGGCCAGCTATAGGTCTCAGCCATCGGTTGCTGCAGGGCTTCGCCACCGTTACGAGGGCAGGCCTCCTTGGCCCTCTGATGGGACAAGAAGATATTATCAGAATGATCGTTCTGCTTCAGATTGGGACTCAAACATGAGGGGTGGAAGCCGCAGTCGGCGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

386

Amino Acids

43.53

Weight (kDa)

8.93

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 258	7e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 248	5e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16880 FvH4_3g16880 FvH4_3g16880
rosa_chinensis	RchiOBHm_Chr5g0006861 RchiOBHm_Chr5g0028131
rosa_laevigata	RLG00000031435 RLG00000033069
rosa_multiflora	Rmu_co8357761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051560 Rroxscaffold_1G00069190
rosa_rugosa	Rorug04G0425200 Rorug05G0104400
rosa_samantha	Rh5AG197500 Rh5BG051800 Rh5BG196100 Rh5CG216100 Rh5DG197800
rosa_wichuraiana	Rw5G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AciI	CCGC	4 cut(s)	63, 94, 588, 1141
AclWI	GGATC	4 cut(s)	98, 719, 776, 791
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	897, 1092
AfaI	GTAC	3 cut(s)	289, 351, 914
AfiI	CCNNNNNNNGG	6 cut(s)	69, 932, 1002, 1045, 1070, 1071
AgsI	TTSAA	5 cut(s)	30, 230, 319, 406, 604
AjnI	CCWGG	3 cut(s)	47, 67, 146
AluBI	AGCT	8 cut(s)	76, 260, 372, 409, 466, 539, 577, 999
AluI	AGCT	8 cut(s)	76, 260, 372, 409, 466, 539, 577, 999
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	4 cut(s)	408, 661, 703, 1011
Alw44I	GTGCAC	1 cut(s)	42
AlwI	GGATC	4 cut(s)	98, 719, 776, 791
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	5 cut(s)	144, 655, 993, 1052, 1061
ApaLI	GTGCAC	1 cut(s)	42
ApeKI	GCWGC	6 cut(s)	73, 585, 856, 859, 862, 1022
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	3 cut(s)	238, 432, 1062
AsuC2I	CCSGG	3 cut(s)	98, 931, 932
AsuHPI	GGTGA	2 cut(s)	221, 554
AsuII	TTCGAA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	930
AvaII	GGWCC	2 cut(s)	238, 432
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	6 cut(s)	85, 572, 868, 871, 874, 1009
BccI	CCATC	2 cut(s)	1021, 1064
BciT130I	CCWGG	3 cut(s)	49, 69, 148
BcnI	CCSGG	3 cut(s)	98, 931, 932
BcoDI	GTCTC	4 cut(s)	408, 661, 703, 1011
BfaI	CTAG	2 cut(s)	257, 1156
BfmI	CTRYAG	2 cut(s)	1000, 1023
BglI	GCCNNNNNGGC	1 cut(s)	1060
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	9 cut(s)	63, 74, 586, 589, 857, 860, 863, 1023, 1141
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	9 cut(s)	64, 75, 587, 590, 858, 861, 864, 1024, 1142
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	6 cut(s)	49, 69, 98, 148, 931, 932
Bme18I	GGWCC	2 cut(s)	238, 432
BmeT110I	CYCGRG	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	238, 432, 1062
BmrFI	CCNGG	6 cut(s)	49, 69, 98, 148, 931, 932
BmrI	ACTGGG	1 cut(s)	808
BmsI	GCATC	4 cut(s)	193, 742, 751, 877
BmuI	ACTGGG	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	98, 931, 932
BsaAI	YACGTR	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	1011
BsaJI	CCNNGG	9 cut(s)	47, 48, 67, 68, 147, 929, 930, 931, 1058
Bsc4I	CCNNNNNNNGG	6 cut(s)	69, 932, 1002, 1045, 1070, 1071
Bse1I	ACTGG	4 cut(s)	596, 814, 905, 941
Bse3DI	GCAATG	1 cut(s)	580
BseBI	CCWGG	3 cut(s)	49, 69, 148
BseDI	CCNNGG	9 cut(s)	47, 48, 67, 68, 147, 929, 930, 931, 1058
BseGI	GGATG	2 cut(s)	566, 757
BseLI	CCNNNNNNNGG	6 cut(s)	69, 932, 1002, 1045, 1070, 1071
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	3 cut(s)	564, 606, 1022
BseNI	ACTGG	4 cut(s)	596, 814, 905, 941
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	6 cut(s)	85, 572, 868, 871, 874, 1009
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	5 cut(s)	146, 657, 995, 1054, 1063
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	98, 931
BslFI	GGGAC	3 cut(s)	266, 1087, 1130
BslI	CCNNNNNNNGG	6 cut(s)	69, 932, 1002, 1045, 1070, 1071
BsmAI	GTCTC	4 cut(s)	408, 661, 703, 1011
BsmFI	GGGAC	3 cut(s)	266, 1087, 1130
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	5 cut(s)	146, 657, 995, 1054, 1063
Bso31I	GGTCTC	1 cut(s)	1011
BsoBI	CYCGRG	1 cut(s)	930
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
Bsp1720I	GCTNAGC	1 cut(s)	573
BspACI	CCGC	4 cut(s)	63, 94, 588, 1141
BspANI	GGCC	5 cut(s)	146, 657, 995, 1054, 1063
BspCNI	CTCAG	3 cut(s)	565, 607, 1021
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	4 cut(s)	98, 719, 776, 791
BspT104I	TTCGAA	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	1011
BsrDI	GCAATG	1 cut(s)	580
BsrI	ACTGG	4 cut(s)	596, 814, 905, 941
BssECI	CCNNGG	9 cut(s)	47, 48, 67, 68, 147, 929, 930, 931, 1058
BssMI	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
BssT1I	CCWWGG	1 cut(s)	1058
Bst2UI	CCWGG	3 cut(s)	49, 69, 148
Bst4CI	ACNGT	4 cut(s)	292, 315, 640, 1040
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	5 cut(s)	154, 426, 593, 997, 1052
BstDEI	CTNAG	6 cut(s)	573, 615, 633, 661, 732, 1008
BstF5I	GGATG	2 cut(s)	566, 757
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	8 cut(s)	106, 451, 500, 687, 727, 784, 799, 1099
BstMAI	GTCTC	4 cut(s)	408, 661, 703, 1011
BstMBI	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
BstNI	CCWGG	3 cut(s)	49, 69, 148
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	6 cut(s)	47, 67, 96, 146, 929, 930
BstSFI	CTRYAG	2 cut(s)	1000, 1023
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	6 cut(s)	85, 572, 868, 871, 874, 1009
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	2 cut(s)	103, 497
BstYI	RGATCY	2 cut(s)	103, 497
BsuRI	GGCC	5 cut(s)	146, 657, 995, 1054, 1063
BtsCI	GGATG	2 cut(s)	566, 757
BtsIMutI	CAGTG	1 cut(s)	912
Cac8I	GCNNGC	5 cut(s)	154, 426, 593, 997, 1052
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	3 cut(s)	238, 432, 1062
Cfr9I	CCCGGG	1 cut(s)	930
Csp6I	GTAC	3 cut(s)	288, 350, 913
CviQI	GTAC	3 cut(s)	288, 350, 913
DdeI	CTNAG	6 cut(s)	573, 615, 633, 661, 732, 1008
DpnI	GATC	8 cut(s)	105, 450, 499, 686, 726, 783, 798, 1098
DpnII	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	1058
Eco147I	AGGCCT	2 cut(s)	657, 1054
Eco31I	GGTCTC	1 cut(s)	1011
Eco47I	GGWCC	2 cut(s)	238, 432
Eco57I	CTGAAG	2 cut(s)	897, 1092
Eco88I	CYCGRG	1 cut(s)	930
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	3 cut(s)	47, 67, 146
EcoT14I	CCWWGG	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	1058
FaqI	GGGAC	3 cut(s)	266, 1087, 1130
Fnu4HI	GCNGC	9 cut(s)	63, 74, 586, 589, 857, 860, 863, 1023, 1141
FokI	GGATG	2 cut(s)	573, 764
Fsp4HI	GCNGC	9 cut(s)	63, 74, 586, 589, 857, 860, 863, 1023, 1141
FspBI	CTAG	2 cut(s)	257, 1156
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	9 cut(s)	63, 74, 586, 589, 857, 860, 863, 1023, 1141
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	5 cut(s)	146, 657, 995, 1054, 1063
HapII	CCGG	2 cut(s)	98, 931
HhaI	GCGC	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	118, 1118
HpaII	CCGG	2 cut(s)	98, 931
HphI	GGTGA	2 cut(s)	221, 554
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	5 cut(s)	684, 900, 1069, 1092, 1111
Hpy188III	TCNNGA	7 cut(s)	107, 200, 503, 722, 758, 775, 800
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	313, 738
HpyCH4III	ACNGT	4 cut(s)	292, 315, 640, 1040
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	9 cut(s)	44, 135, 156, 341, 428, 890, 910, 982, 1025
HpyF3I	CTNAG	6 cut(s)	573, 615, 633, 661, 732, 1008
HpySE526I	ACGT	1 cut(s)	286
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
Lsp1109I	GCAGC	6 cut(s)	85, 572, 868, 871, 874, 1009
LweI	GCATC	4 cut(s)	193, 742, 751, 877
MaeI	CTAG	2 cut(s)	257, 1156
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	4 cut(s)	209, 481, 1040, 1151
MalI	GATC	8 cut(s)	105, 450, 499, 686, 726, 783, 798, 1098
MboI	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
MboII	GAAGA	4 cut(s)	371, 800, 890, 1092
MflI	RGATCY	2 cut(s)	103, 497
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	6 cut(s)	12, 37, 79, 130, 400, 690
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	1112
Mox20I	TGGCCA	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	807
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	294, 384
MslI	CAYNNNNRTG	4 cut(s)	218, 342, 456, 834
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	2 cut(s)	98, 931
MspR9I	CCNGG	6 cut(s)	49, 69, 98, 148, 931, 932
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	3 cut(s)	49, 69, 148
MvnI	CGCG	1 cut(s)	648
NciI	CCSGG	3 cut(s)	98, 931, 932
NdeII	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
NmuCI	GTSAC	2 cut(s)	209, 481
NspI	RCATGY	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	156
PagI	TCATGA	1 cut(s)	199
PasI	CCCWGGG	2 cut(s)	48, 68
PceI	AGGCCT	2 cut(s)	657, 1054
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	9 cut(s)	64, 75, 587, 590, 858, 861, 864, 1024, 1142
PleI	GAGTC	1 cut(s)	1112
PpsI	GAGTC	1 cut(s)	1112
Ppu21I	YACGTR	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	47, 67, 146
PspGI	CCWGG	3 cut(s)	47, 67, 146
PspPI	GGNCC	3 cut(s)	238, 432, 1062
PspPPI	RGGWCCY	1 cut(s)	432
PstI	CTGCAG	1 cut(s)	1027
PsuI	RGATCY	2 cut(s)	103, 497
RsaI	GTAC	3 cut(s)	289, 351, 914
RsaNI	GTAC	3 cut(s)	288, 350, 913
RseI	CAYNNNNRTG	4 cut(s)	218, 342, 456, 834
SaqAI	TTAA	2 cut(s)	294, 384
SatI	GCNGC	9 cut(s)	63, 74, 586, 589, 857, 860, 863, 1023, 1141
Sau3AI	GATC	8 cut(s)	103, 448, 497, 684, 724, 781, 796, 1096
Sau96I	GGNCC	3 cut(s)	238, 432, 1062
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	1 cut(s)	1112
ScrFI	CCNGG	6 cut(s)	49, 69, 98, 148, 931, 932
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	4 cut(s)	193, 742, 751, 877
SfcI	CTRYAG	2 cut(s)	1000, 1023
SfiI	GGCCNNNNNGGCC	1 cut(s)	1060
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	2 cut(s)	238, 432
SmaI	CCCGGG	1 cut(s)	932
SmiMI	CAYNNNNRTG	4 cut(s)	218, 342, 456, 834
SphI	GCATGC	1 cut(s)	156
Sse9I	AATT	6 cut(s)	12, 37, 79, 130, 400, 690
SseBI	AGGCCT	2 cut(s)	657, 1054
SsiI	CCGC	4 cut(s)	63, 94, 588, 1141
SspMI	CTAG	2 cut(s)	257, 1156
StuI	AGGCCT	2 cut(s)	657, 1054
StyD4I	CCNGG	6 cut(s)	47, 67, 96, 146, 929, 930
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	4 cut(s)	292, 315, 640, 1040
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	4 cut(s)	84, 116, 443, 535
TasI	AATT	6 cut(s)	12, 37, 79, 130, 400, 690
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	3 cut(s)	65, 591, 1143
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	294, 384
Tru9I	TTAA	2 cut(s)	294, 384
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	2 cut(s)	209, 481
TseI	GCWGC	6 cut(s)	73, 585, 856, 859, 862, 1022
Tsp45I	GTSAC	2 cut(s)	209, 481
TspDTI	ATGAA	5 cut(s)	17, 102, 344, 429, 569
TspMI	CCCGGG	1 cut(s)	930
TspRI	CASTG	1 cut(s)	912
VneI	GTGCAC	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	238, 432
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	156
XmaI	CCCGGG	1 cut(s)	930
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	257, 1156
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.