Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Reverse (-)

11014148 .. 11018189

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGCTCCTCAAACACTGGCGGGCCCTAGCCACCGAAGCCAAGCACGTCTCCTTCACCGTCGCAAAGTTCTTCGGCCTCCTCCACGTCACCGATTCCTACCTCTGCTCCTGCACCCTCGTGCACGGTCCTAGTATGCTCCCCACCTTCAATTGCAGCGGCGATGTGGTCCTCGCGGAGCACTTCTCCCACCGGTTAGGTAAGGTCGCCCACGGTGACGTCGTCCTGGTTCGGTCTCCGGACGACCCGAAGAGGATGGTGGCCAAGAGGGTCCTGGGCTTGGAGGGCGATGAGGTCACTTCCTCTTTCGATCCCCAACGGATTGTTCAGCACGATAGGATTGTGGTTCCTAAGGGGCATGTTTGGATTCAGGGAGACAACACTTATGCCTCCTTAGATTCACGGTCATATGGACCTGTGCCTTACGGTCTTATTCAAGGCAGAGTGTTTTTCAGGGTATGGCCACCTGATGGCTTTGGATTAGTAAATGACCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

8.5

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	24 - 174	6.4e-23	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	3 cut(s)	22, 159, 176
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	2 cut(s)	261, 461
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	280, 470
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	151, 437
AjiI	CACGTC	2 cut(s)	49, 88
AjnI	CCWGG	2 cut(s)	225, 273
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	2 cut(s)	126, 183
Alw26I	GTCTC	3 cut(s)	55, 240, 369
Alw44I	GTGCAC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	4 cut(s)	24, 76, 261, 461
ApaI	GGGCCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	156
AsiGI	ACCGGT	1 cut(s)	192
AspS9I	GGNCC	6 cut(s)	24, 25, 128, 169, 271, 413
AsuHPI	GGTGA	3 cut(s)	49, 82, 227
AvaII	GGWCC	4 cut(s)	128, 169, 271, 413
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	2 cut(s)	28, 126
BalI	TGGCCA	2 cut(s)	263, 463
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	126, 183
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	250, 464
BciT130I	CCWGG	2 cut(s)	227, 275
BcoDI	GTCTC	3 cut(s)	55, 240, 369
BfaI	CTAG	2 cut(s)	29, 132
BisI	GCNGC	2 cut(s)	157, 160
BlsI	GCNGC	2 cut(s)	158, 161
Bme1390I	CCNGG	2 cut(s)	227, 275
Bme18I	GGWCC	4 cut(s)	128, 169, 271, 413
BmgBI	CACGTC	2 cut(s)	49, 88
BmgT120I	GGNCC	6 cut(s)	24, 25, 128, 169, 271, 413
BmiI	GGNNCC	3 cut(s)	26, 272, 348
BmrFI	CCNGG	2 cut(s)	227, 275
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	211, 274
BsaWI	WCCGGW	2 cut(s)	192, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 470
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	227, 275
BseDI	CCNNGG	2 cut(s)	211, 274
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	280, 470
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	28, 126
BseXI	GCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	4 cut(s)	26, 78, 263, 463
BshTI	ACCGGT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	126, 183
BsiSI	CCGG	2 cut(s)	193, 239
BslI	CCNNNNNNNGG	2 cut(s)	280, 470
BsmAI	GTCTC	3 cut(s)	55, 240, 369
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	26, 78, 263, 463
Bso31I	GGTCTC	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	28, 126, 183
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	3 cut(s)	22, 159, 176
BspANI	GGCC	4 cut(s)	26, 78, 263, 463
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	26, 272, 348
BspPI	GGATC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	211, 274
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	227, 275
Bst4CI	ACNGT	5 cut(s)	61, 128, 215, 405, 428
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	351, 394
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	3 cut(s)	55, 240, 369
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 285
BstNI	CCWGG	2 cut(s)	227, 275
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	225, 273
BstSLI	GKGCMC	2 cut(s)	28, 126
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	26, 78, 263, 463
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	2 cut(s)	177, 303
BtrI	CACGTC	2 cut(s)	49, 88
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	6 cut(s)	24, 25, 128, 169, 271, 413
CspAI	ACCGGT	1 cut(s)	192
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	26, 32, 41, 78, 263, 279, 463, 474, 497
CviKI_1	RGCY	9 cut(s)	26, 32, 41, 78, 263, 279, 463, 474, 497
DdeI	CTNAG	2 cut(s)	351, 394
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	2 cut(s)	261, 461
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	240
Eco47I	GGWCC	4 cut(s)	128, 169, 271, 413
Eco81I	CCTNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	2 cut(s)	25, 271
EcoRII	CCWGG	2 cut(s)	225, 273
EcoT38I	GRGCYC	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	137, 360, 387, 409, 411, 460
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	15
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	157, 160
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	157, 160
FspBI	CTAG	2 cut(s)	29, 132
GluI	GCNGC	2 cut(s)	157, 160
HaeIII	GGCC	4 cut(s)	26, 78, 263, 463
HapII	CCGG	2 cut(s)	193, 239
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	3 cut(s)	95, 367, 398
HpaII	CCGG	2 cut(s)	193, 239
HphI	GGTGA	3 cut(s)	49, 82, 227
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	2 cut(s)	65, 224
HpyAV	CCTTC	2 cut(s)	64, 157
HpyCH4III	ACNGT	5 cut(s)	61, 128, 215, 405, 428
HpyCH4IV	ACGT	3 cut(s)	48, 87, 219
HpyCH4V	TGCA	3 cut(s)	114, 124, 156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 285
HpyF3I	CTNAG	2 cut(s)	351, 394
HpySE526I	ACGT	3 cut(s)	48, 87, 219
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	4 cut(s)	12, 113, 144, 178
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	29, 132
MaeII	ACGT	3 cut(s)	48, 87, 219
MaeIII	GTNAC	3 cut(s)	88, 215, 295
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	64, 262
MfeI	CAATTG	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	28, 126, 183
MlsI	TGGCCA	2 cut(s)	263, 463
MluCI	AATT	1 cut(s)	151
MluNI	TGGCCA	2 cut(s)	263, 463
Mox20I	TGGCCA	2 cut(s)	263, 463
MroI	TCCGGA	1 cut(s)	238
MscI	TGGCCA	2 cut(s)	263, 463
MseI	TTAA	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	2 cut(s)	263, 463
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	193, 239
MspR9I	CCNGG	2 cut(s)	227, 275
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	227, 275
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	38, 285
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	3 cut(s)	26, 272, 348
NmuCI	GTSAC	3 cut(s)	88, 215, 295
NspI	RCATGY	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	95, 367, 398
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	470
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	158, 161
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	225, 273
PspGI	CCWGG	2 cut(s)	225, 273
PspN4I	GGNNCC	3 cut(s)	26, 272, 348
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	6 cut(s)	24, 25, 128, 169, 271, 413
PspPPI	RGGWCCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	2 cut(s)	157, 160
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	6 cut(s)	24, 25, 128, 169, 271, 413
ScrFI	CCNGG	2 cut(s)	227, 275
SduI	GDGCHC	3 cut(s)	28, 126, 183
SinI	GGWCC	4 cut(s)	128, 169, 271, 413
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	22, 159, 176
SspMI	CTAG	2 cut(s)	29, 132
StyD4I	CCNGG	2 cut(s)	225, 273
TaaI	ACNGT	5 cut(s)	61, 128, 215, 405, 428
TaiI	ACGT	3 cut(s)	51, 90, 222
TaqI	TCGA	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	151
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	95, 367, 398
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	3 cut(s)	88, 215, 295
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	3 cut(s)	88, 215, 295
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	122
VpaK11BI	GGWCC	4 cut(s)	128, 169, 271, 413
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	2 cut(s)	29, 132
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.