Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Reverse (-)

22704473 .. 22711417

Gene Structure 6945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGACTCCTCAGTCACCTGAAACAATGGCGAGCCGTCGCAACCGAAGCCAAGCATGTCTCCTTCGCCGTCGCAAAGTTCATCGGTCTCATCCACCTCACCGAGTCCTACCTCTGCTCCTCTACCCTCTTGCACGGTCCGAGTATGCTCCCTACCTTCAATTCCAGCGGCGATGTGGTGCTCGCCGAGCACCTATCCCATCGATTAGGGAAGGTAGTCCCCGGTGACGTCGTCCTAGTTCGGTCTCCCGACGACCCGAAAAAGATGGTGGCCAAGCGGGTCCTCGGTTTGGAGGGTGATCAGGTCACTTTTTTCGACCCCAATCGGATTCGCAAGCACAATACAACTGTGGTTCCTAAGGGGCACGTTTGGATTCAGGGAGATAACACTTATGCATCCTTTGATTCACGATCGTATGGACCTGTGCCATACGGTCTTATTCAAGGCAGAGTGTTCTTCAGGGTAATGCTTTTTCTCCTTTCTAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

9.88

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	23 - 104	2.5e-11	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	114 - 155	1.8e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AatII	GACGTC	1 cut(s)	231
AciI	CCGC	2 cut(s)	168, 277
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	160, 443
Alw21I	GWGCWC	2 cut(s)	183, 192
Alw26I	GTCTC	3 cut(s)	64, 92, 249
AoxI	GGCC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	137, 280, 419
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	8, 91, 236, 308
AvaII	GGWCC	3 cut(s)	137, 280, 419
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	183, 192
BccI	CCATC	2 cut(s)	207, 259
BceAI	ACGGC	2 cut(s)	20, 53
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	64, 92, 249
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	3 cut(s)	137, 280, 419
BmgT120I	GGNCC	3 cut(s)	137, 280, 419
BmiI	GGNNCC	2 cut(s)	281, 354
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	2 cut(s)	92, 249
BsaJI	CCNNGG	2 cut(s)	220, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	220, 283
BseGI	GGATG	2 cut(s)	90, 395
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	413
BsiHKAI	GWGCWC	2 cut(s)	183, 192
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	64, 92, 249
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	2 cut(s)	92, 249
Bsp1286I	GDGCHC	3 cut(s)	183, 192, 366
Bsp143I	GATC	2 cut(s)	298, 410
BspACI	CCGC	2 cut(s)	168, 277
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	281, 354
BspTNI	GGTCTC	2 cut(s)	92, 249
BssECI	CCNNGG	2 cut(s)	220, 283
BssMI	GATC	2 cut(s)	298, 410
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	137, 349, 434
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	33, 183, 335
BstDEI	CTNAG	2 cut(s)	11, 357
BstF5I	GGATG	2 cut(s)	90, 395
BstKTI	GATC	2 cut(s)	301, 413
BstMAI	GTCTC	3 cut(s)	64, 92, 249
BstMBI	GATC	2 cut(s)	298, 410
BstMCI	CGRYCG	1 cut(s)	413
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 187
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	90, 395
Cac8I	GCNNGC	3 cut(s)	33, 183, 335
Cfr13I	GGNCC	3 cut(s)	137, 280, 419
ClaI	ATCGAT	1 cut(s)	202
CpoI	CGGWCCG	1 cut(s)	137
CspI	CGGWCCG	1 cut(s)	137
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	3 cut(s)	35, 50, 272
CviKI_1	RGCY	3 cut(s)	35, 50, 272
DdeI	CTNAG	2 cut(s)	11, 357
DpnI	GATC	2 cut(s)	300, 412
DpnII	GATC	2 cut(s)	298, 410
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	270
Eco31I	GGTCTC	2 cut(s)	92, 249
Eco47I	GGWCC	3 cut(s)	137, 280, 419
Eco57I	CTGAAG	1 cut(s)	442
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	1 cut(s)	59
FaiI	YATR	5 cut(s)	57, 146, 393, 417, 430
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	77, 382
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	5 cut(s)	6, 104, 328, 373, 404
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	8, 91, 236, 308
Hpy188I	TCNGA	2 cut(s)	141, 327
Hpy188III	TCNNGA	2 cut(s)	248, 408
Hpy99I	CGWCG	4 cut(s)	41, 74, 233, 254
HpyAV	CCTTC	3 cut(s)	73, 166, 205
HpyCH4III	ACNGT	3 cut(s)	137, 349, 434
HpyCH4IV	ACGT	2 cut(s)	228, 366
HpyCH4V	TGCA	2 cut(s)	133, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 187
HpyF3I	CTNAG	2 cut(s)	11, 357
HpySE526I	ACGT	2 cut(s)	228, 366
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	298, 410
LmnI	GCTCC	2 cut(s)	122, 153
LpnPI	CCDG	7 cut(s)	32, 178, 235, 287, 362, 435, 445
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	228, 366
MaeIII	GTNAC	3 cut(s)	14, 224, 304
MalI	GATC	2 cut(s)	300, 412
MboI	GATC	2 cut(s)	298, 410
MboII	GAAGA	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	183, 192, 366
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	20, 107, 122, 130, 137, 286, 293
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	47, 187
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	298, 410
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	281, 354
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	14, 224, 304
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	328, 373, 404
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	170
Ple19I	CGATCG	1 cut(s)	413
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	281, 354
PspPI	GGNCC	3 cut(s)	137, 280, 419
PspPPI	RGGWCCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	413
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	2 cut(s)	298, 410
Sau96I	GGNCC	3 cut(s)	137, 280, 419
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	3 cut(s)	183, 192, 366
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	3 cut(s)	137, 280, 419
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	168, 277
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	137, 349, 434
TaiI	ACGT	2 cut(s)	231, 369
TaqI	TCGA	2 cut(s)	202, 315
TaqII	GACCGA	2 cut(s)	74, 231
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	328, 373, 404
TseFI	GTSAC	3 cut(s)	14, 224, 304
Tsp45I	GTSAC	3 cut(s)	14, 224, 304
TspDTI	ATGAA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	137, 280, 419
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.