Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Reverse (-)

22751604 .. 22754980

Gene Structure 3377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG201100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGACTCCTCAGTCACCTGAAACAATGGCGAGCCGTCGCAACCGAAGCCAAGCATGTCTCCTTCGCCGTCGCAAAGTTCATCGGTCTCATCCACCTCACCGAGTCCTACCTCTGCTCCTGTACCCTCTTGCACGGTCCGAGTATGCTCCCTACCTTCAATTCCAGCGGCGATGTGGTGCTCGCCGAGCACCTATCCCATCGATTAGGGAAGGTGGTCCCCGGTGACGTCGTCATAGTTCGGTCTCCCGACGACCCGAAAAAGATGGTGGCCAAGCGGGTCCTCGGTTTGGAGGGTGATCAGGTCACTTTTTTCGACCCCAATCGGATTCGCAAGCACAATACAACTGTGGGTGTTTATTGCTTGTTTTGTGAATCTCTCTCTTATCTTTTGTTGTCAGAAATTCTCAGTGGTGTATTAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

142

Amino Acids

15.72

Weight (kDa)

7.75

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	23 - 104	2.6e-11	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AatII	GACGTC	1 cut(s)	231
AciI	CCGC	2 cut(s)	168, 277
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	160
Alw21I	GWGCWC	2 cut(s)	183, 192
Alw26I	GTCTC	3 cut(s)	64, 92, 249
AoxI	GGCC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	137, 217, 280
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	8, 91, 236, 308
AvaII	GGWCC	3 cut(s)	137, 217, 280
BalI	TGGCCA	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	183, 192
BccI	CCATC	2 cut(s)	207, 259
BceAI	ACGGC	2 cut(s)	20, 53
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	64, 92, 249
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	3 cut(s)	137, 217, 280
BmgT120I	GGNCC	3 cut(s)	137, 217, 280
BmiI	GGNNCC	2 cut(s)	219, 281
BmrFI	CCNGG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	2 cut(s)	92, 249
BsaJI	CCNNGG	2 cut(s)	220, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	220, 283
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	25, 421
BshFI	GGCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	183, 192
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	64, 92, 249
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	2 cut(s)	92, 249
Bsp1286I	GDGCHC	2 cut(s)	183, 192
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	168, 277
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	24, 420
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	219, 281
BspTNI	GGTCTC	2 cut(s)	92, 249
BssECI	CCNNGG	2 cut(s)	220, 283
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	137, 349
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	33, 183, 335
BstDEI	CTNAG	2 cut(s)	11, 407
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	3 cut(s)	64, 92, 249
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 187
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	33, 183, 335
Cfr13I	GGNCC	3 cut(s)	137, 217, 280
ClaI	ATCGAT	1 cut(s)	202
CpoI	CGGWCCG	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	123
CspI	CGGWCCG	1 cut(s)	137
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	3 cut(s)	35, 50, 272
CviKI_1	RGCY	3 cut(s)	35, 50, 272
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	11, 407
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	270
Eco31I	GGTCTC	2 cut(s)	92, 249
Eco47I	GGWCC	3 cut(s)	137, 217, 280
EcoO109I	RGGNCCY	1 cut(s)	280
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	57, 146, 236
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	4 cut(s)	6, 104, 328, 374
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	8, 91, 236, 308
Hpy188I	TCNGA	3 cut(s)	141, 327, 400
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	4 cut(s)	41, 74, 233, 254
HpyAV	CCTTC	3 cut(s)	73, 166, 205
HpyCH4III	ACNGT	2 cut(s)	137, 349
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 187
HpyF3I	CTNAG	2 cut(s)	11, 407
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	122, 153
LpnPI	CCDG	5 cut(s)	32, 133, 178, 235, 287
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	14, 224, 304
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	183, 192
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	2 cut(s)	160, 402
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	20, 107, 122, 137, 286, 293
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	47, 187
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	219, 281
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	14, 224, 304
NspI	RCATGY	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	328, 374
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	219, 281
PspPI	GGNCC	3 cut(s)	137, 217, 280
PspPPI	RGGWCCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	3 cut(s)	137, 217, 280
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	183, 192
SetI	ASST	8 cut(s)	21, 99, 114, 158, 195, 216, 231, 306
SinI	GGWCC	3 cut(s)	137, 217, 280
Sse9I	AATT	2 cut(s)	160, 402
SsiI	CCGC	2 cut(s)	168, 277
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	137, 349
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	202, 315
TaqII	GACCGA	2 cut(s)	74, 231
TasI	AATT	2 cut(s)	160, 402
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	328, 374
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	14, 224, 304
Tsp45I	GTSAC	3 cut(s)	14, 224, 304
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	415
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	137, 217, 280
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.