Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Forward (+)

33980115 .. 33980417

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1252300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAGAAGCGTAGCAAAAGAAGCCATGGATCTGTCAGTAACATTAGCAAAGTTCATGGGTTTGCTCCACGCCACCGACGCCAACCTCTGCTCCTCTACGGCCCCAGTATGCTCCCTACCCTGAACATCTCCGGCATGCTTCTCTCCGAACACGTGTCTGGTCGCATTGGGATGGTGGGTTCCGGCGATTTGGTCCTGGTTTGGTCTCCGACGGACCCTCGGAAGATTGTGACCAAGCGTGTCCTGGGTATGCAGGGTGATAAAGTCACCTACTTTGTCGATCCCAAGCACAGCGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008237 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0016787 GO:0017171 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070011 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko04020 ko04022 ko04024 ko04261 ko04925 ko04970 ko04972 map03060 map04020 map04022 map04024 map04261 map04925 map04970 map04972

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

101

Amino Acids

11.13

Weight (kDa)

10.72

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	28 - 91	4.1e-09	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	37, 275
AcvI	CACGTG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	79
AflIII	ACRYGT	2 cut(s)	151, 153
AjnI	CCWGG	2 cut(s)	195, 243
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	37, 275
AoxI	GGCC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	101, 193, 214
AsuHPI	GGTGA	2 cut(s)	259, 269
AvaII	GGWCC	2 cut(s)	193, 214
BbrPI	CACGTG	1 cut(s)	154
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	197, 245
BcoDI	GTCTC	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	197, 245
Bme18I	GGWCC	2 cut(s)	193, 214
BmgT120I	GGNCC	3 cut(s)	101, 193, 214
BmiI	GGNNCC	3 cut(s)	103, 181, 216
BmrFI	CCNGG	2 cut(s)	197, 245
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	25, 218, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	197, 245
BseDI	CCNNGG	3 cut(s)	25, 218, 244
BseGI	GGATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	132, 183
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	29, 280
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	103, 181, 216
BspPI	GGATC	2 cut(s)	37, 275
BspTNI	GGTCTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	25, 218, 244
BssMI	GATC	2 cut(s)	29, 280
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	197, 245
BstACI	GRCGYC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	32, 283
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	29, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 78
BstNI	CCWGG	2 cut(s)	197, 245
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	195, 243
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	101, 193, 214
CseI	GACGC	1 cut(s)	87
CviAII	CATG	3 cut(s)	26, 56, 136
CviJI	RGCY	2 cut(s)	24, 102
CviKI_1	RGCY	2 cut(s)	24, 102
DpnI	GATC	2 cut(s)	31, 282
DpnII	GATC	2 cut(s)	29, 280
Eco130I	CCWWGG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	193, 214
Eco72I	CACGTG	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	195, 243
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	29, 59, 139
FaiI	YATR	5 cut(s)	27, 57, 110, 137, 251
FatI	CATG	3 cut(s)	25, 55, 135
FokI	GGATG	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	132, 183
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	29, 59, 139
HpaII	CCGG	2 cut(s)	132, 183
HphI	GGTGA	2 cut(s)	259, 269
Hpy188I	TCNGA	3 cut(s)	148, 210, 222
Hpy99I	CGWCG	2 cut(s)	81, 214
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 78
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	29, 59, 139
Kzo9I	GATC	2 cut(s)	29, 280
LmnI	GCTCC	3 cut(s)	70, 96, 117
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	38, 229, 265
MalI	GATC	2 cut(s)	31, 282
MboI	GATC	2 cut(s)	29, 280
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	3 cut(s)	96, 104, 228
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	132, 183
MspR9I	CCNGG	2 cut(s)	197, 245
MvaI	CCWGG	2 cut(s)	197, 245
MwoI	GCNNNNNNNGC	2 cut(s)	21, 78
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	29, 280
NlaIII	CATG	3 cut(s)	29, 59, 139
NlaIV	GGNNCC	3 cut(s)	103, 181, 216
NmuCI	GTSAC	2 cut(s)	229, 265
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	195, 243
PspCI	CACGTG	1 cut(s)	154
PspGI	CCWGG	2 cut(s)	195, 243
PspN4I	GGNNCC	3 cut(s)	103, 181, 216
PspPI	GGNCC	3 cut(s)	101, 193, 214
PsuI	RGATCY	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	29, 280
Sau96I	GGNCC	3 cut(s)	101, 193, 214
ScrFI	CCNGG	2 cut(s)	197, 245
SetI	ASST	4 cut(s)	88, 156, 272, 302
SinI	GGWCC	2 cut(s)	193, 214
SmiMI	CAYNNNNRTG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	195, 243
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	229, 265
Tsp45I	GTSAC	2 cut(s)	229, 265
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	193, 214
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.