Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Reverse (-)

23547597 .. 23549657

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATATATCCGGCCCGGCCCGACCCAACCCTCCAAAACCTTCTGGTTTCTTCCTCTCAAATCTTTTCGCTCCTATGAGACTCCTCAGTCACCTGAAACAATGGCGAGCCGTCGCAACCGAAGCCAAGCATGTCTCCTTCGCCGTCGCAAAGTTCATCGGTCTCATCCACCTCACCGAGTCCTACCTCTGCTCCTGTACCCTCTTGCACGGTCCGAGTATGCTCCCTACCTTCAATTCGAGCGGCGATGTGGTGCTCGCCGAGCACCTATCCCATCGTTTAGGGAAGGTGGTCCCCGGTGACGTCGTCATAGTTCGGTCTCCCGACGACCCGAAAAAGATGGTGGCCAAGCGGGTCCTGGGTTTGGAGGGTGATAAGGTCACTTTTTTCGACCCCCATCGGATTCGCAAGCACAATACGACTGTGGTTCCGAAGGGGCATGTTTGGATTCAGGGAGATAACACTTATTCATCCTTTGATTCACGGTCATATGGACCTGTGCCATATGGTCTTATTCAAGGCAGAGTGTTTTTCAGGTCCCTGACAATGATAAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

187

Amino Acids

20.69

Weight (kDa)

9.95

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	48 - 129	5.9e-11	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	139 - 179	4.5e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	306
AccBSI	CCGCTC	1 cut(s)	243
AciI	CCGC	2 cut(s)	243, 352
AcoI	YGGCCR	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	235, 518
AjnI	CCWGG	1 cut(s)	357
Alw21I	GWGCWC	2 cut(s)	258, 267
Alw26I	GTCTC	4 cut(s)	73, 139, 167, 324
AoxI	GGCC	3 cut(s)	13, 18, 345
AspS9I	GGNCC	7 cut(s)	14, 19, 212, 292, 355, 494, 537
AsuC2I	CCSGG	2 cut(s)	17, 297
AsuHPI	GGTGA	4 cut(s)	83, 166, 311, 383
AvaII	GGWCC	5 cut(s)	212, 292, 355, 494, 537
BalI	TGGCCA	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	258, 267
BccI	CCATC	3 cut(s)	282, 334, 405
BceAI	ACGGC	2 cut(s)	95, 128
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	2 cut(s)	17, 297
BcoDI	GTCTC	4 cut(s)	73, 139, 167, 324
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	17, 297, 359
Bme18I	GGWCC	5 cut(s)	212, 292, 355, 494, 537
BmgT120I	GGNCC	7 cut(s)	14, 19, 212, 292, 355, 494, 537
BmiI	GGNNCC	4 cut(s)	294, 356, 429, 539
BmrFI	CCNGG	3 cut(s)	17, 297, 359
BpuMI	CCSGG	2 cut(s)	17, 297
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	2 cut(s)	167, 324
BsaJI	CCNNGG	2 cut(s)	295, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	295, 358
BseGI	GGATG	3 cut(s)	165, 470, 561
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	15, 20, 347
BsiHKAI	GWGCWC	2 cut(s)	258, 267
BsiSI	CCGG	3 cut(s)	12, 17, 297
BslFI	GGGAC	2 cut(s)	278, 523
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	4 cut(s)	73, 139, 167, 324
BsmFI	GGGAC	2 cut(s)	278, 523
BsnI	GGCC	3 cut(s)	15, 20, 347
Bso31I	GGTCTC	2 cut(s)	167, 324
Bsp1286I	GDGCHC	2 cut(s)	258, 267
BspACI	CCGC	2 cut(s)	243, 352
BspANI	GGCC	3 cut(s)	15, 20, 347
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	4 cut(s)	294, 356, 429, 539
BspTNI	GGTCTC	2 cut(s)	167, 324
BsrBI	CCGCTC	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	295, 358
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	212, 424, 486
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	108, 258, 410
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	165, 470, 561
BstMAI	GTCTC	4 cut(s)	73, 139, 167, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 262
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	2 cut(s)	134, 443
BstSCI	CCNGG	3 cut(s)	15, 295, 357
BsuRI	GGCC	3 cut(s)	15, 20, 347
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	165, 470, 561
Cac8I	GCNNGC	3 cut(s)	108, 258, 410
Cfr13I	GGNCC	7 cut(s)	14, 19, 212, 292, 355, 494, 537
CpoI	CGGWCCG	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	198
CspI	CGGWCCG	1 cut(s)	212
CviAII	CATG	2 cut(s)	131, 440
CviJI	RGCY	5 cut(s)	15, 20, 110, 125, 347
CviKI_1	RGCY	5 cut(s)	15, 20, 110, 125, 347
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	86
DrdI	GACNNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	345
Eco31I	GGTCTC	2 cut(s)	167, 324
Eco47I	GGWCC	5 cut(s)	212, 292, 355, 494, 537
EcoO109I	RGGNCCY	2 cut(s)	355, 537
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	134, 443
FaqI	GGGAC	2 cut(s)	278, 523
FatI	CATG	2 cut(s)	130, 439
FauI	CCCGC	1 cut(s)	345
FauNDI	CATATG	2 cut(s)	490, 505
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	152, 457
Fsp4HI	GCNGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	15, 20, 347
HapII	CCGG	3 cut(s)	12, 17, 297
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	134, 443
HinfI	GANTC	5 cut(s)	81, 179, 403, 448, 479
HpaII	CCGG	3 cut(s)	12, 17, 297
HphI	GGTGA	4 cut(s)	83, 166, 311, 383
Hpy188I	TCNGA	3 cut(s)	216, 402, 432
Hpy188III	TCNNGA	1 cut(s)	323
Hpy99I	CGWCG	4 cut(s)	116, 149, 308, 329
HpyAV	CCTTC	5 cut(s)	51, 148, 241, 280, 427
HpyCH4III	ACNGT	3 cut(s)	212, 424, 486
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 262
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	134, 443
LmnI	GCTCC	3 cut(s)	76, 197, 228
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	89, 299, 379
MbiI	CCGCTC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	258, 267
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	75, 188
MnlI	CCTC	7 cut(s)	42, 65, 95, 182, 197, 212, 361
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	3 cut(s)	12, 17, 297
MspR9I	CCNGG	3 cut(s)	17, 297, 359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	122, 262
NciI	CCSGG	2 cut(s)	17, 297
NdeI	CATATG	2 cut(s)	490, 505
NlaIII	CATG	2 cut(s)	134, 443
NlaIV	GGNNCC	4 cut(s)	294, 356, 429, 539
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	89, 299, 379
NspI	RCATGY	2 cut(s)	134, 443
PfeI	GAWTC	3 cut(s)	403, 448, 479
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	75, 187
PpsI	GAGTC	2 cut(s)	75, 187
PpuMI	RGGWCCY	2 cut(s)	355, 537
Psp5II	RGGWCCY	2 cut(s)	355, 537
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	294, 356, 429, 539
PspPI	GGNCC	7 cut(s)	14, 19, 212, 292, 355, 494, 537
PspPPI	RGGWCCY	2 cut(s)	355, 537
PsyI	GACNNNGTC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
Rsr2I	CGGWCCG	1 cut(s)	212
RsrII	CGGWCCG	1 cut(s)	212
SatI	GCNGC	1 cut(s)	244
Sau96I	GGNCC	7 cut(s)	14, 19, 212, 292, 355, 494, 537
SchI	GAGTC	2 cut(s)	75, 188
ScrFI	CCNGG	3 cut(s)	17, 297, 359
SduI	GDGCHC	2 cut(s)	258, 267
SinI	GGWCC	5 cut(s)	212, 292, 355, 494, 537
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	243, 352
StyD4I	CCNGG	3 cut(s)	15, 295, 357
TaaI	ACNGT	3 cut(s)	212, 424, 486
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	239, 390
TaqII	GACCGA	2 cut(s)	149, 306
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	403, 448, 479
TseFI	GTSAC	3 cut(s)	89, 299, 379
Tsp45I	GTSAC	3 cut(s)	89, 299, 379
TspDTI	ATGAA	2 cut(s)	145, 459
Tth111I	GACNNNGTC	1 cut(s)	305
VpaK11BI	GGWCC	5 cut(s)	212, 292, 355, 494, 537
XceI	RCATGY	2 cut(s)	134, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.