Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Reverse (-)

23794362 .. 23799333

Gene Structure 4972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGACTCCTCAGTCACCTGAAACAATGGCGAGCCGTCGCAACCGAAGCCAAGCATGTCTCCTTCGCCGTCGCAAAGTTCATCGGTCTCATCCACCTCACCGAGTCCTACCTCTGCTCCTGTACCCTCTTGCACGGTCCGAGTATGCTCCCTACCTTCAATTCCAGCGGCGATGTGGTGCTCGCCGAGCACCTGTCCCATCGATTAGGGAAGGTGGTCCCCGGTGACGTCGTCATAGTTCGGTCTCCCGACGACCCGAAAAAGATGGTGGCCAAGCGGGTCCTCGGTTTGGAGGGTGATCAGGTCACTTTTTTCGACCCCAATCGGATTCGCAAGCACAATACAACTGTGGTTCCTAAGGGGCACGTTTGGATTCAGGGAGATAACACTTATGCATCCTTTGATTCACGATCATATGGACCTGTGCCATACGGTCTTATTCAAGGCAGAGTGTTCTTCAGGGTATGGCCACCTGATGGCTTTGGATCAGTGGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

166

Amino Acids

18.45

Weight (kDa)

9.2

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	23 - 104	4.5e-11	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	114 - 156	3.4e-09	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AatII	GACGTC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	2 cut(s)	168, 277
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	2 cut(s)	270, 467
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	289, 476
AgsI	TTSAA	2 cut(s)	160, 443
Alw21I	GWGCWC	2 cut(s)	183, 192
Alw26I	GTCTC	3 cut(s)	64, 92, 249
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	2 cut(s)	270, 467
AspS9I	GGNCC	4 cut(s)	137, 217, 280, 419
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	8, 91, 236, 308
AvaII	GGWCC	4 cut(s)	137, 217, 280, 419
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	366
BalI	TGGCCA	2 cut(s)	272, 469
Bbv12I	GWGCWC	2 cut(s)	183, 192
BccI	CCATC	3 cut(s)	207, 259, 470
BceAI	ACGGC	2 cut(s)	20, 53
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	64, 92, 249
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	4 cut(s)	137, 217, 280, 419
BmgT120I	GGNCC	4 cut(s)	137, 217, 280, 419
BmiI	GGNNCC	3 cut(s)	219, 281, 354
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	2 cut(s)	92, 249
BsaJI	CCNNGG	2 cut(s)	220, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 476
Bse21I	CCTNAGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	220, 283
BseGI	GGATG	3 cut(s)	90, 395, 499
BseLI	CCNNNNNNNGG	2 cut(s)	289, 476
BseMII	CTCAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	366
BshFI	GGCC	2 cut(s)	272, 469
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	183, 192
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	2 cut(s)	181, 203
BslI	CCNNNNNNNGG	2 cut(s)	289, 476
BsmAI	GTCTC	3 cut(s)	64, 92, 249
BsmFI	GGGAC	2 cut(s)	181, 203
BsnI	GGCC	2 cut(s)	272, 469
Bso31I	GGTCTC	2 cut(s)	92, 249
Bsp1286I	GDGCHC	3 cut(s)	183, 192, 366
Bsp143I	GATC	3 cut(s)	298, 410, 485
BspACI	CCGC	2 cut(s)	168, 277
BspANI	GGCC	2 cut(s)	272, 469
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	219, 281, 354
BspPI	GGATC	1 cut(s)	493
BspTNI	GGTCTC	2 cut(s)	92, 249
BssECI	CCNNGG	2 cut(s)	220, 283
BssMI	GATC	3 cut(s)	298, 410, 485
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	137, 349, 434
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	33, 183, 335
BstDEI	CTNAG	2 cut(s)	11, 357
BstF5I	GGATG	3 cut(s)	90, 395, 499
BstKTI	GATC	3 cut(s)	301, 413, 488
BstMAI	GTCTC	3 cut(s)	64, 92, 249
BstMBI	GATC	3 cut(s)	298, 410, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 187
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	272, 469
BsuTUI	ATCGAT	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	90, 395, 499
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	33, 183, 335
Cfr13I	GGNCC	4 cut(s)	137, 217, 280, 419
ClaI	ATCGAT	1 cut(s)	202
CpoI	CGGWCCG	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	123
CspI	CGGWCCG	1 cut(s)	137
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	5 cut(s)	35, 50, 272, 469, 480
CviKI_1	RGCY	5 cut(s)	35, 50, 272, 469, 480
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	11, 357
DpnI	GATC	3 cut(s)	300, 412, 487
DpnII	GATC	3 cut(s)	298, 410, 485
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	2 cut(s)	270, 467
Eco31I	GGTCTC	2 cut(s)	92, 249
Eco47I	GGWCC	4 cut(s)	137, 217, 280, 419
Eco57I	CTGAAG	1 cut(s)	442
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	1 cut(s)	59
FaiI	YATR	8 cut(s)	57, 146, 236, 393, 415, 417, 430, 466
FaqI	GGGAC	2 cut(s)	181, 203
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	77, 382
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	272, 469
HapII	CCGG	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	5 cut(s)	6, 104, 328, 373, 404
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	8, 91, 236, 308
Hpy188I	TCNGA	2 cut(s)	141, 327
Hpy188III	TCNNGA	2 cut(s)	248, 408
Hpy99I	CGWCG	4 cut(s)	41, 74, 233, 254
HpyAV	CCTTC	3 cut(s)	73, 166, 205
HpyCH4III	ACNGT	3 cut(s)	137, 349, 434
HpyCH4IV	ACGT	2 cut(s)	228, 366
HpyCH4V	TGCA	2 cut(s)	133, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 187
HpyF3I	CTNAG	2 cut(s)	11, 357
HpySE526I	ACGT	2 cut(s)	228, 366
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 410, 485
LmnI	GCTCC	2 cut(s)	122, 153
LweI	GCATC	1 cut(s)	404
MaeII	ACGT	2 cut(s)	228, 366
MaeIII	GTNAC	3 cut(s)	14, 224, 304
MalI	GATC	3 cut(s)	300, 412, 487
MboI	GATC	3 cut(s)	298, 410, 485
MboII	GAAGA	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	183, 192, 366
MlsI	TGGCCA	2 cut(s)	272, 469
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	2 cut(s)	272, 469
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	20, 107, 122, 137, 286, 293
Mox20I	TGGCCA	2 cut(s)	272, 469
Mph1103I	ATGCAT	1 cut(s)	397
MscI	TGGCCA	2 cut(s)	272, 469
Msp20I	TGGCCA	2 cut(s)	272, 469
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	47, 187
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	3 cut(s)	298, 410, 485
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	3 cut(s)	219, 281, 354
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	14, 224, 304
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	328, 373, 404
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	219, 281, 354
PspPI	GGNCC	4 cut(s)	137, 217, 280, 419
PspPPI	RGGWCCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	298, 410, 485
Sau96I	GGNCC	4 cut(s)	137, 217, 280, 419
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	3 cut(s)	183, 192, 366
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	4 cut(s)	137, 217, 280, 419
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	168, 277
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	137, 349, 434
TaiI	ACGT	2 cut(s)	231, 369
TaqI	TCGA	2 cut(s)	202, 315
TaqII	GACCGA	2 cut(s)	74, 231
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	328, 373, 404
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	3 cut(s)	14, 224, 304
Tsp45I	GTSAC	3 cut(s)	14, 224, 304
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	4 cut(s)	137, 217, 280, 419
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
ZraI	GACGTC	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.