FvH4_3g20840

Lysine-specific histone demethylase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010932
Physical Location & Seq
Forward (+)
13907736 .. 13911345
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20840.t4

Sequence Viewer

Length: 2166 bp
ATGGAGGCGCCGGGTTCGGATGGTTCTACAATAAAGAGGTCTTTGAGGAAGAAGGCCGGTTTGCGATGTTATGATGAGAATCTAATGGATGATCTGATAGAGAAGCATTTGGGTGGTACTTTTAAGAAGAAGAGTCGGTCAAAGGAGGATTTGGAGAAAGAGACTGAGACGGAGGCGATGATAGCATTCTCCCTCGGGTTCCCTATCGACGCGCTTCTTGAGGAGGAGATTAATGCTGGGGTGGTCACGGAGTTAGGCGGGAAGGAGCAGAATGATTATATTGTTGTGAGGAATCATATTTTAGCGAGATGGAGGAGTAATGTCCGAGTGTGGCTCACAAAAGCACAGATTAGAGAAACCGTGAGTGGTGAGTATGGGGATTTGATATCTGCAGCTTATGATTATCTTTTCTATAATGGATACATTAATTTTGGGGTTGCACCGTCGTATGTGGCATATATGCCAGAGGAGGCAACCGAAGGGTCTGTTGTTATTGTTGGAGCAGGGCTTGCTGGACTAGCAGCTGCAAGGCATCTAATTTCATTGGGTTTCAAAGTAGTTGTCTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTACACCCAAAAGATGGGGCACGATGGCAAATTTTCTGCTGCAGATCTCGGTGGCAGTGTCATTACTGGCATCCATGCTAACCCTCTTGGAGTTCTGGCTAGGCAACTTTCTATTCCACTTCATAAGGTCAGGGATAAGTGCCCGTTGTACAAGCCTGATGGCACGCCTGTTGATAAGGAAATCGACTCTAAGATTGAAGTCATCTTTAATAAGCTGCTTGACAAAGTCATGGAACTCAGGCAAACTATGGGTGGGTTTGCAAAAGATATTTCGCTAGGTTCAGTTTTGGAGACCCTTAGGCAGTTGTATGCCGTTGCTAGAAGTTCTGAGGAGAGGCAACTTCTTGATTGGCATCTCGCAAATTTGGAATATGCAAATGCTGGATGTCTATCAAATCTTTCAGCTGCCTATTGGGATCAAGATGATCCTTATGAAATGGGTGGGGACCACTGCTTTCTCGCAGGAGACGAAGGGGTTGAAGTGATCGCAGGGGACCAAGTGTTTCGAGGGGATATGGTCCTGTGCACTGTTCCTCTAGGAGTTCTGAAAAAAGGAGCTATCAAATTTGAACCTGAGTTGCCCCAAGAAAAACTTGCAGCAATTCAAAGGCTGGGGTTTGGGCTGCTGAACAAAGTAGCTATGGTTTTCCCTCATGTCTTCTGGGGAGAAGATCTGGACACTTTTGGATGTCTCAATGAACACAGCCAGAAACGTGGAGAATTCTTTTTGTTCTACAGTTACCATACTGTTTCTGGAGGTCCAGTTCTAATTGCACTGGTGGCTGGAGAAGCTGCACAAACATTTGAATACACAGAGCCATCCAGCTTGCTCCATCGAGTTTTAAATGTCCTCAGAGGTATCTACAGTCCTAAGGGAATTGTTGTGCCTGATCCGGTACAAACCATATGTACAAGATGGGGCAGTGATCCGCTTTCCTATGGTTCATACTCTCATGTCAGAGTGCAGTCTTCCGGCAGTGACTATGATTTACTTGCAGAAAATGTGGGAAACCGACTGTTCTTTGCAGGTGAGGCCACAAATAGGCAACATCCAGCTACCATGCATGGAGCCTTCTTGAGCGGCCTAAGAGAGGCATCGTGTATGTATCGAGCCACAAGGAGTAGTCAAAATAATGCCAAGAAATTTTCACAAAAGAATGTTGGACCCAGCAATGATATGCTAGTAGATCTATTCAAGAATCCAGATCTAGCATTTGGGAAGTTTTCATTTGTTTTTGATCCTACAACAGAAGATCCAAAATCAGTAGGGCTTATGAGAGTTAGTATTGGGAGTGATGAAGACGGTTATAAACAAGAGTTCGCAAACAGCTTCCAGCACCCCTTAAACCTACCATTGCAGCTTTATGCTGTTGTATCTCGTGAGCAAGCATCTGGATTAGAACTGGTGACAGGAGGAGAAGAAAGTAGGTTATCATACTTGGTAAAAGATCTTGGTTTGCAACTAATGGGACCTAGTGCCCTAGGATCTGCAGGTAACTCCTTGGCAATTAGTATTGTCAATGCACGAAGAGGCAGGGGAAAGAATCGTACGTTTGCTTGGCGGCAATAG

Protein Analysis

722

Amino Acids

79.22

Weight (kDa)

5.96

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 74 - 144 1.2e-13 SWIRM domain
Pyr_redox_2 PF07992 162 - 204 7.2e-06 Pyridine nucleotide-disulphide oxidoreductase
DAO PF01266 163 - 197 2.5e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 165 - 226 7e-12 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 170 - 593 7.5e-79 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13682
fragaria_vesca FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica MD03G1220300.v1.1
prunus_persica Prupe.4G188600_v2.0.a1
pyrus_communis pycom03g16960
rosa_chinensis RchiOBHm_Chr5g0035141
rosa_laevigata RLG00000033600 RLG00000033601
rosa_multiflora Rmu_sc0000879.1_g000007
rosa_roxburghii Rroxscaffold_1G00045270
rosa_rugosa Rorug05G0150300
rosa_samantha Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana Rw5G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1905
AarI CACCTGC 1 cut(s) 1613
Acc36I ACCTGC 2 cut(s) 1613, 2078
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 1677
AccII CGCG 1 cut(s) 212
AciI CCGC 4 cut(s) 258, 1526, 1677, 2158
AclWI GGATC 7 cut(s) 1016, 1020, 1481, 1517, 1829, 1844, 2089
AcsI RAATTY 5 cut(s) 626, 958, 1160, 1316, 1739
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 5 cut(s) 118, 746, 1494, 1507, 2146
AfiI CCNNNNNNNGG 3 cut(s) 610, 1638, 1687
AgsI TTSAA 7 cut(s) 553, 794, 1076, 1166, 1202, 1403, 1792
AjnI CCWGG 1 cut(s) 583
AloI GAACNNNNNNTCC 2 cut(s) 1344, 1376
Alw21I GWGCWC 1 cut(s) 1124
Alw26I GTCTC 5 cut(s) 155, 161, 881, 1056, 1292
Alw44I GTGCAC 1 cut(s) 1120
AlwI GGATC 7 cut(s) 1016, 1020, 1481, 1517, 1829, 1844, 2089
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 3 cut(s) 54, 1629, 1678
ApaLI GTGCAC 1 cut(s) 1120
ApoI RAATTY 5 cut(s) 626, 958, 1160, 1316, 1739
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
AseI ATTAAT 2 cut(s) 231, 426
AspA2I CCTAGG 1 cut(s) 2077
AspLEI GCGC 2 cut(s) 10, 214
AspS9I GGNCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 380, 1637, 2014
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
AvrII CCTAGG 1 cut(s) 2077
AxyI CCTNAGG 2 cut(s) 893, 1467
BaeGI GKGCMC 4 cut(s) 618, 740, 1124, 2077
BanI GGYRCC 1 cut(s) 7
BauI CACGAG 1 cut(s) 1974
BbsI GAAGAC 3 cut(s) 1246, 1557, 1902
Bbv12I GWGCWC 1 cut(s) 1124
BccI CCATC 8 cut(s) 14, 303, 604, 614, 749, 1423, 1437, 1506
BceAI ACGGC 1 cut(s) 893
BciT130I CCWGG 1 cut(s) 585
BciVI GTATCC 1 cut(s) 413
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 5 cut(s) 155, 161, 881, 1056, 1292
BfaI CTAG 9 cut(s) 518, 696, 872, 915, 1133, 1778, 1805, 2070, 2078
BfmI CTRYAG 5 cut(s) 390, 636, 1330, 1459, 2085
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 2 cut(s) 1613, 2078
BfuI GTATCC 1 cut(s) 413
BglII AGATCT 5 cut(s) 640, 1267, 1783, 1801, 2044
BlnI CCTAGG 1 cut(s) 2077
Bme1390I CCNGG 2 cut(s) 12, 585
Bme18I GGWCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
BmiI GGNNCC 7 cut(s) 9, 200, 1043, 1091, 1666, 1762, 2067
BmrFI CCNGG 2 cut(s) 12, 585
BmsI GCATC 5 cut(s) 541, 675, 958, 1700, 1994
BpiI GAAGAC 3 cut(s) 1246, 1557, 1902
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpmI CTGGAG 2 cut(s) 1371, 1401
BpuEI CTTGAG 2 cut(s) 239, 1693
BpuMI CCSGG 1 cut(s) 12
BsaBI GATNNNNATC 3 cut(s) 78, 948, 985
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 193, 2077, 2097
BsaWI WCCGGW 1 cut(s) 1489
BsaXI ACNNNNNCTCC 2 cut(s) 1344, 1374
Bsc4I CCNNNNNNNGG 3 cut(s) 610, 1638, 1687
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 4 cut(s) 667, 1358, 1377, 2004
Bse21I CCTNAGG 2 cut(s) 893, 1467
Bse3DI GCAATG 2 cut(s) 1774, 1949
Bse8I GATNNNNATC 3 cut(s) 78, 948, 985
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 193, 2077, 2097
BseGI GGATG 7 cut(s) 25, 94, 666, 986, 1289, 1415, 1645
BseJI GATNNNNATC 3 cut(s) 78, 948, 985
BseLI CCNNNNNNNGG 3 cut(s) 610, 1638, 1687
BseMI GCAATG 2 cut(s) 1774, 1949
BseMII CTCAG 5 cut(s) 156, 847, 915, 1161, 1462
BseNI ACTGG 4 cut(s) 667, 1358, 1377, 2004
BseRI GAGGAG 6 cut(s) 236, 239, 328, 482, 941, 2025
BseSI GKGCMC 4 cut(s) 618, 740, 1124, 2077
BseYI CCCAGC 3 cut(s) 236, 1207, 1763
BsgI GTGCAG 2 cut(s) 1374, 1580
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 56, 1631, 1680
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 1124
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 11, 57, 1490, 1569
BsiWI CGTACG 1 cut(s) 2144
BslFI GGGAC 3 cut(s) 1055, 1103, 2079
BslI CCNNNNNNNGG 3 cut(s) 610, 1638, 1687
BsmAI GTCTC 5 cut(s) 155, 161, 881, 1056, 1292
BsmBI CGTCTC 2 cut(s) 161, 1056
BsmFI GGGAC 3 cut(s) 1055, 1103, 2079
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 3 cut(s) 56, 1631, 1680
Bso31I GGTCTC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 4 cut(s) 618, 740, 1124, 2077
Bsp1407I TGTACA 2 cut(s) 744, 1505
BspACI CCGC 4 cut(s) 258, 1526, 1677, 2158
BspANI GGCC 3 cut(s) 56, 1631, 1680
BspCNI CTCAG 5 cut(s) 157, 846, 916, 1162, 1461
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 7 cut(s) 9, 200, 1043, 1091, 1666, 1762, 2067
BspMAI CTGCAG 3 cut(s) 394, 640, 2089
BspMI ACCTGC 2 cut(s) 1613, 2078
BspPI GGATC 7 cut(s) 1016, 1020, 1481, 1517, 1829, 1844, 2089
BspT107I GGYRCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 1677
BsrDI GCAATG 2 cut(s) 1774, 1949
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 2 cut(s) 744, 1505
BsrI ACTGG 4 cut(s) 667, 1358, 1377, 2004
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 193, 2077, 2097
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 1974
BssT1I CCWWGG 2 cut(s) 2077, 2097
Bst2BI CACGAG 1 cut(s) 1974
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 8 cut(s) 361, 444, 1126, 1334, 1345, 1463, 1614, 1901
Bst6I CTCTTC 3 cut(s) 125, 586, 2119
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 2 cut(s) 744, 1505
BstC8I GCNNGC 4 cut(s) 510, 761, 1424, 1983
BstENI CCTNNNNNAGG 1 cut(s) 1685
BstF5I GGATG 7 cut(s) 25, 94, 666, 986, 1289, 1415, 1645
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 2 cut(s) 10, 214
BstMAI GTCTC 5 cut(s) 155, 161, 881, 1056, 1292
BstMWI GCNNNNNNNGC 6 cut(s) 182, 509, 518, 1376, 1385, 1628
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 10, 583
BstSFI CTRYAG 5 cut(s) 390, 636, 1330, 1459, 2085
BstSLI GKGCMC 4 cut(s) 618, 740, 1124, 2077
BstUI CGCG 1 cut(s) 212
BstV2I GAAGAC 3 cut(s) 1246, 1557, 1902
BstX2I RGATCY 7 cut(s) 640, 1267, 1783, 1801, 1849, 2044, 2081
BstXI CCANNNNNNTGG 1 cut(s) 1310
BstYI RGATCY 7 cut(s) 640, 1267, 1783, 1801, 1849, 2044, 2081
Bsu36I CCTNAGG 2 cut(s) 893, 1467
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 56, 1631, 1680
BtgZI GCGATG 2 cut(s) 79, 191
BtsCI GGATG 7 cut(s) 25, 94, 666, 986, 1289, 1415, 1645
BtsI GCAGTG 4 cut(s) 658, 1045, 1525, 1579
BtsIMutI CAGTG 6 cut(s) 658, 1045, 1122, 1370, 1525, 1579
BveI ACCTGC 2 cut(s) 1613, 2078
Cac8I GCNNGC 4 cut(s) 510, 761, 1424, 1983
CfoI GCGC 2 cut(s) 10, 214
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
CseI GACGC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 5 cut(s) 117, 745, 1493, 1506, 2145
CviAII CATG 6 cut(s) 671, 826, 1250, 1550, 1657, 1661
CviQI GTAC 5 cut(s) 117, 745, 1493, 1506, 2145
DinI GGCGCC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 1440
Eam1104I CTCTTC 3 cut(s) 125, 586, 2119
EarI CTCTTC 3 cut(s) 125, 586, 2119
Eco130I CCWWGG 2 cut(s) 2077, 2097
Eco31I GGTCTC 1 cut(s) 881
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
Eco81I CCTNAGG 2 cut(s) 893, 1467
Eco88I CYCGRG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 1685
EcoO109I RGGNCCY 1 cut(s) 2066
EcoRI GAATTC 1 cut(s) 1316
EcoRII CCWGG 1 cut(s) 583
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 2077, 2097
EcoT22I ATGCAT 1 cut(s) 1662
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 2077, 2097
Esp3I CGTCTC 2 cut(s) 161, 1056
FaeI CATG 6 cut(s) 674, 829, 1253, 1553, 1660, 1664
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 3 cut(s) 1055, 1103, 2079
FatI CATG 6 cut(s) 670, 825, 1249, 1549, 1656, 1660
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 1502
FokI GGATG 7 cut(s) 32, 101, 653, 993, 1296, 1402, 1632
FspBI CTAG 9 cut(s) 518, 696, 872, 915, 1133, 1778, 1805, 2070, 2078
GlaI GCGC 2 cut(s) 9, 213
GsaI CCCAGC 3 cut(s) 240, 1211, 1767
GsuI CTGGAG 2 cut(s) 1371, 1401
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 56, 1631, 1680
HapII CCGG 4 cut(s) 11, 57, 1490, 1569
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 10, 214
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 6 cut(s) 674, 829, 1253, 1553, 1660, 1664
Hin6I GCGC 2 cut(s) 8, 212
HinP1I GCGC 2 cut(s) 8, 212
HinfI GANTC 7 cut(s) 79, 133, 292, 577, 782, 1795, 2140
HpaII CCGG 4 cut(s) 11, 57, 1490, 1569
HphI GGTGA 3 cut(s) 380, 1637, 2014
Hpy166II GTNNAC 2 cut(s) 598, 1122
Hpy188I TCNGA 7 cut(s) 19, 96, 326, 925, 1143, 1451, 1556
Hpy8I GTNNAC 2 cut(s) 598, 1122
Hpy99I CGWCG 2 cut(s) 212, 448
HpyAV CCTTC 6 cut(s) 46, 256, 473, 563, 1061, 1678
HpyCH4III ACNGT 8 cut(s) 361, 444, 1126, 1334, 1345, 1463, 1614, 1901
HpyCH4IV ACGT 2 cut(s) 1309, 2147
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 509, 518, 1376, 1385, 1628
HpySE526I ACGT 2 cut(s) 1309, 2147
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 6 cut(s) 674, 829, 1253, 1553, 1660, 1664
HspAI GCGC 2 cut(s) 8, 212
KasI GGCGCC 1 cut(s) 7
LmnI GCTCC 5 cut(s) 265, 500, 1151, 1431, 1664
LweI GCATC 5 cut(s) 541, 675, 958, 1700, 1994
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 9 cut(s) 518, 696, 872, 915, 1133, 1778, 1805, 2070, 2078
MaeII ACGT 2 cut(s) 1309, 2147
MaeIII GTNAC 5 cut(s) 244, 1334, 1574, 2002, 2090
MbiI CCGCTC 1 cut(s) 1677
MflI RGATCY 7 cut(s) 640, 1267, 1783, 1801, 1849, 2044, 2081
MhlI GDGCHC 4 cut(s) 618, 740, 1124, 2077
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 142, 776
MmeI TCCRAC 2 cut(s) 478, 1738
Mph1103I ATGCAT 1 cut(s) 1662
MseI TTAA 6 cut(s) 123, 231, 426, 804, 1439, 1940
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 524, 1001
MspI CCGG 4 cut(s) 11, 57, 1490, 1569
MspR9I CCNGG 2 cut(s) 12, 585
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 182, 509, 518, 1376, 1385, 1628
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 1502
NlaIII CATG 6 cut(s) 674, 829, 1253, 1553, 1660, 1664
NlaIV GGNNCC 7 cut(s) 9, 200, 1043, 1091, 1666, 1762, 2067
NmuCI GTSAC 3 cut(s) 244, 1574, 2002
NsiI ATGCAT 1 cut(s) 1662
PaqCI CACCTGC 1 cut(s) 1613
PcsI WCGNNNNNNNCGW 1 cut(s) 1062
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 5 cut(s) 79, 292, 577, 1795, 2140
Pfl23II CGTACG 1 cut(s) 2144
PflFI GACNNNGTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 610
PleI GAGTC 2 cut(s) 141, 776
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 2 cut(s) 141, 776
PpuMI RGGWCCY 1 cut(s) 2066
PshBI ATTAAT 2 cut(s) 231, 426
PsiI TTATAA 1 cut(s) 1905
Psp5II RGGWCCY 1 cut(s) 2066
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 3 cut(s) 236, 1207, 1763
PspGI CCWGG 1 cut(s) 583
PspLI CGTACG 1 cut(s) 2144
PspN4I GGNNCC 7 cut(s) 9, 200, 1043, 1091, 1666, 1762, 2067
PspPI GGNCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
PspPPI RGGWCCY 1 cut(s) 2066
PstI CTGCAG 3 cut(s) 394, 640, 2089
PsuI RGATCY 7 cut(s) 640, 1267, 1783, 1801, 1849, 2044, 2081
PsyI GACNNNGTC 1 cut(s) 821
PvuII CAGCTG 2 cut(s) 524, 1001
RsaI GTAC 5 cut(s) 118, 746, 1494, 1507, 2146
RsaNI GTAC 5 cut(s) 117, 745, 1493, 1506, 2145
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 6 cut(s) 123, 231, 426, 804, 1439, 1940
Sau96I GGNCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
SchI GAGTC 2 cut(s) 142, 776
ScrFI CCNGG 2 cut(s) 12, 585
SduI GDGCHC 4 cut(s) 618, 740, 1124, 2077
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 5 cut(s) 541, 675, 958, 1700, 1994
SfcI CTRYAG 5 cut(s) 390, 636, 1330, 1459, 2085
SfoI GGCGCC 1 cut(s) 9
SinI GGWCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 218, 1672
SmoI CTYRAG 2 cut(s) 218, 1672
SsiI CCGC 4 cut(s) 258, 1526, 1677, 2158
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 9 cut(s) 518, 696, 872, 915, 1133, 1778, 1805, 2070, 2078
StyD4I CCNGG 2 cut(s) 10, 583
StyI CCWWGG 2 cut(s) 2077, 2097
TaaI ACNGT 8 cut(s) 361, 444, 1126, 1334, 1345, 1463, 1614, 1901
TaiI ACGT 2 cut(s) 1312, 2150
TaqI TCGA 6 cut(s) 207, 580, 780, 1102, 1432, 1705
TaqII GACCGA 1 cut(s) 126
TatI WGTACW 2 cut(s) 744, 1505
TauI GCSGC 2 cut(s) 1680, 2161
TfiI GAWTC 5 cut(s) 79, 292, 577, 1795, 2140
Tru1I TTAA 6 cut(s) 123, 231, 426, 804, 1439, 1940
Tru9I TTAA 6 cut(s) 123, 231, 426, 804, 1439, 1940
TscAI CASTG 6 cut(s) 658, 1052, 1129, 1377, 1525, 1579
TseFI GTSAC 3 cut(s) 244, 1574, 2002
Tsp45I GTSAC 3 cut(s) 244, 1574, 2002
TspDTI ATGAA 7 cut(s) 531, 707, 1044, 1308, 1530, 1812, 1908
TspGWI ACGGA 2 cut(s) 185, 263
TspRI CASTG 6 cut(s) 658, 1052, 1129, 1377, 1525, 1579
Tth111I GACNNNGTC 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 1120
VpaK11BI GGWCC 6 cut(s) 1042, 1090, 1114, 1355, 1760, 2066
VspI ATTAAT 2 cut(s) 231, 426
XagI CCTNNNNNAGG 1 cut(s) 1685
XapI RAATTY 5 cut(s) 626, 958, 1160, 1316, 1739
XcmI CCANNNNNNNNNTGG 1 cut(s) 1346
XmaJI CCTAGG 1 cut(s) 2077
XspI CTAG 9 cut(s) 518, 696, 872, 915, 1133, 1778, 1805, 2070, 2078
Zsp2I ATGCAT 1 cut(s) 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.