Rroxscaffold_1G00045270

Lysine-specific histone demethylase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010932
Physical Location & Seq
Reverse (-)
64271641 .. 64274851
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045270.1

Sequence Viewer

Length: 2247 bp
ATGGAGACGCCGGGTGCAGATGGTTCTGCAATAAAGCGGTCTCTGAGGAAGAAGGTCGGTTTGCGAAGTTATGATGAGAATCTAATGGATGATCTCATAGAGAAGCATTTGGGTGGGACTTTCAAGAAGAAGAGTAGGACAAAGGAGGATTTGGAGAAAGAGACTGAGATCGAGGCGATGATAGCATTCTCCCTCGGGTTCCCTATCGATGCGCTTCTTGAGGAGGAAATTAATGCTGGGGTGGTCAAAGAGTTAGGCGGGAAGGAGCAGAATGATTATATTGTTGTGAGGAATCATATTTTAGCAAGATGGAGGAGTAATGTCCGAGTGTGGCTCACAAAAGCACAGATTAGAGAAACCGTGAGTGGTGAGTATGGGGATTTGATATCTGCAGCTTATGATTATCTTTTTTATAATGGATACATTAATTTTGGGGTTGCACCATCATATGTGGCATATATGCCAGAGGAGGCAACTGAAGGGTCTGTTGTTATTGTCGGAGCAGGACTTGCTGGACTAGCAGCCGCAAGGCATCTTATGTCATTGGGTTTCAAAGTGGTTGTTTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTACACCCAAAAGATGGGGCACAATGGAAACTTTTCTGCTGTGGATCTTGGTGGCAGTGTCATTACTGGCATACATGCTAACCCTCTTGGAGTTTTGGCTAGGCAACTTTCTATTCCACTTCATAAGGTCAGGGATAACTGCCCCTTGTACAAGCCTGATGGTATGCCTGTTGATAAGGAAATCGACTCTAAGATCGAAGTCATCTTTAATAAGCTGCTTGACAAAGTCATGGAACTCAGGCAAACTATGGGTGGGTTTGCAAATGATATTTCTCTGGGTTCAGTTTTGGAGACACTCAGGCAGTTGTATGCTGTTGCTAGAAGTGCTGAGGAGAGGCAACTTCTTGATTGGCATCTCGCAAATTTGGAATATGCAAATGCCGGATGTCTATCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGGGACCACTGCTTTCTCGCTGGAGGTAATTGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCTATTTTCTATGGAAAGACTGTGAATACCATTCGTTATGCAGATGGAGGGGTTGAAGTGATCGCAGGCGACCAAGTGTTTCGAGGGGATATGGTCCTGTGCACTGTTCCTCTTGGAGTTCTGAAAAAAGGGGCTATTAAATTTGAACCCGAGTTGCCCCAAGAAAAACTTGCAGCGATTCAAAGGTTGGGGTTTGGGCTGCTGAACAAAGTAGCTATGGTTTTTCCTCATGTTTTCTGGGGAGAAGATCTGGATACGTTTGGATGTCTCAATGAACACAGCCAGAAACGTGGAGAATTCTTTCTGTTCTACAGTTACCATACTGTTTCTGGAGGTCCAGTTCTCATTGCACTGGTGGCTGGAGAAGCTGCACAAACATTTGAATGCACAGAGCCATCCAGCTTGCTTCATCGAGTTTTAAGTGTGCTCAGAGGTATCTACAGTCCTAAGGGCATTGTCGTGCCTGATCCAATACAAACCATATGTACAAGATGGGGCAGTGATCCCCTTTCCTATGGTTCATACTCTCATGTCAGAGTACAGTCATCCGGCAGTGACTATGATTTACTTGCAGAAAATGTGGGAAACCGGCTGTTCTTTGCAGGTGAGGCCACAAATAGGCAACATCCAGCTACCATGCATGGGGCCTTCTTGAGTGGCCTAAGGGAGGCATCGTGCATGTATCGCACCACAAGGAGTAGCCAAAACAATGTCAAGAAAGTCTCACAAAAGAATGTTGGACCAAGCAATGATATGCTGGTAGATCTATTCAAGCATCCAGATCTAGCATTTGGGAAGTTTTCATTTGTATTTGATCCGACAACAGAAGATCCAAAATCTGTAGGGCTTATGAGAGTTAGTATTGGGAGCGATGAAGACAGTTTTAATCAGCAGTTCGTAAACAGCTTCCAGCATTCCTTAAACCTACCATTGCAGCTTTATGCTGTTGTATCTCGTGAGCAAGCATGTGGGTTAGAGCTGGTGACAGGAGGAGAAGAAAGTAGGTTATCATACTTGGTAAAAGATCTTGGTTTGCAACTGATGGGACCTAGTGCCCTAGGATCTGCAGGTAACTCCTTGGCAATTAGTATTTTCAATGCACGAAGAGGCAGGGGAAAGAATCGTATGTTTGCTGGGCGGCAATAG

Protein Analysis

748

Amino Acids

82.22

Weight (kDa)

6.23

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 74 - 144 8.6e-14 SWIRM domain
Pyr_redox_2 PF07992 162 - 204 6.1e-06 Pyridine nucleotide-disulphide oxidoreductase
DAO PF01266 163 - 197 1.5e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 165 - 226 1.2e-12 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 170 - 593 5.3e-80 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13682
fragaria_vesca FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica MD03G1220300.v1.1
prunus_persica Prupe.4G188600_v2.0.a1
pyrus_communis pycom03g16960
rosa_chinensis RchiOBHm_Chr5g0035141
rosa_laevigata RLG00000033600 RLG00000033601
rosa_multiflora Rmu_sc0000879.1_g000007
rosa_roxburghii Rroxscaffold_1G00045270
rosa_rugosa Rorug05G0150300
rosa_samantha Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana Rw5G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AarI CACCTGC 1 cut(s) 1694
Acc36I ACCTGC 2 cut(s) 1694, 2159
AccB7I CCANNNNNTGG 1 cut(s) 610
AciI CCGC 4 cut(s) 37, 258, 525, 2239
AclWI GGATC 8 cut(s) 648, 1016, 1020, 1562, 1598, 1910, 1925, 2170
AcsI RAATTY 3 cut(s) 958, 1241, 1397
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 3 cut(s) 746, 1588, 1641
AfiI CCNNNNNNNGG 4 cut(s) 610, 1719, 1743, 1768
AgsI TTSAA 8 cut(s) 124, 553, 1157, 1247, 1283, 1484, 1873, 2197
AjnI CCWGG 1 cut(s) 583
AloI GAACNNNNNNTCC 2 cut(s) 1425, 1457
AluBI AGCT 9 cut(s) 395, 811, 1316, 1469, 1503, 1733, 2007, 2038, 2080
AluI AGCT 9 cut(s) 395, 811, 1316, 1469, 1503, 1733, 2007, 2038, 2080
Alw21I GWGCWC 2 cut(s) 1205, 1530
Alw26I GTCTC 5 cut(s) 45, 155, 881, 1373, 1828
Alw44I GTGCAC 1 cut(s) 1201
AlwI GGATC 8 cut(s) 648, 1016, 1020, 1562, 1598, 1910, 1925, 2170
Ama87I CYCGRG 2 cut(s) 194, 1250
AoxI GGCC 3 cut(s) 1710, 1746, 1759
ApaLI GTGCAC 1 cut(s) 1201
ApeKI GCWGC 8 cut(s) 392, 521, 811, 1001, 1274, 1300, 1469, 2035
ApoI RAATTY 3 cut(s) 958, 1241, 1397
AseI ATTAAT 2 cut(s) 231, 426
Asp700I GAANNNNTTC 3 cut(s) 628, 1098, 1401
AspA2I CCTAGG 1 cut(s) 2158
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 6 cut(s) 1042, 1195, 1436, 1746, 1841, 2147
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 380, 1718, 2095
AvaI CYCGRG 2 cut(s) 194, 1250
AvaII GGWCC 5 cut(s) 1042, 1195, 1436, 1841, 2147
AvrII CCTAGG 1 cut(s) 2158
AxyI CCTNAGG 2 cut(s) 1548, 1763
BaeGI GKGCMC 3 cut(s) 618, 1205, 2158
BauI CACGAG 1 cut(s) 2055
BbsI GAAGAC 1 cut(s) 1983
Bbv12I GWGCWC 2 cut(s) 1205, 1530
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 8 cut(s) 404, 533, 798, 988, 1286, 1287, 1456, 2047
BccI CCATC 9 cut(s) 14, 303, 451, 604, 749, 1139, 1504, 1587, 2137
BciT130I CCWGG 1 cut(s) 585
BciVI GTATCC 2 cut(s) 413, 1348
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 5 cut(s) 45, 155, 881, 1373, 1828
BfaI CTAG 6 cut(s) 518, 696, 915, 1886, 2151, 2159
BfmI CTRYAG 5 cut(s) 390, 1411, 1540, 1941, 2166
BfuAI ACCTGC 2 cut(s) 1694, 2159
BfuI GTATCC 2 cut(s) 413, 1348
BglII AGATCT 4 cut(s) 1348, 1864, 1882, 2125
BlnI CCTAGG 1 cut(s) 2158
Bme1390I CCNGG 2 cut(s) 12, 585
Bme18I GGWCC 5 cut(s) 1042, 1195, 1436, 1841, 2147
BmeT110I CYCGRG 2 cut(s) 194, 1250
BmgT120I GGNCC 6 cut(s) 1042, 1195, 1436, 1746, 1841, 2147
BmiI GGNNCC 4 cut(s) 200, 1043, 1747, 2148
BmrFI CCNGG 2 cut(s) 12, 585
BmsI GCATC 5 cut(s) 199, 541, 958, 1781, 1885
BpiI GAAGAC 1 cut(s) 1983
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpmI CTGGAG 3 cut(s) 1080, 1452, 1482
Bpu10I CCTNAGC 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 239, 1774
BpuMI CCSGG 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 207
BsaBI GATNNNNATC 3 cut(s) 78, 948, 985
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 193, 2158, 2178
BsaXI ACNNNNNCTCC 4 cut(s) 1425, 1455, 1760, 1790
Bsc4I CCNNNNNNNGG 4 cut(s) 610, 1719, 1743, 1768
Bse118I RCCGGY 1 cut(s) 1689
Bse1I ACTGG 3 cut(s) 667, 1439, 1458
Bse21I CCTNAGG 2 cut(s) 1548, 1763
Bse3DI GCAATG 3 cut(s) 1446, 1855, 2030
Bse8I GATNNNNATC 3 cut(s) 78, 948, 985
BseBI CCWGG 1 cut(s) 585
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 193, 2158, 2178
BseGI GGATG 8 cut(s) 94, 986, 1024, 1370, 1496, 1646, 1726, 1876
BseJI GATNNNNATC 3 cut(s) 78, 948, 985
BseLI CCNNNNNNNGG 4 cut(s) 610, 1719, 1743, 1768
BseMI GCAATG 3 cut(s) 1446, 1855, 2030
BseMII CTCAG 6 cut(s) 35, 156, 847, 907, 915, 1543
BseNI ACTGG 3 cut(s) 667, 1439, 1458
BseRI GAGGAG 5 cut(s) 236, 328, 482, 941, 2106
BseSI GKGCMC 3 cut(s) 618, 1205, 2158
BseXI GCAGC 8 cut(s) 404, 533, 798, 988, 1286, 1287, 1456, 2047
BseYI CCCAGC 2 cut(s) 236, 2234
BsgI GTGCAG 2 cut(s) 36, 1455
BshFI GGCC 3 cut(s) 1712, 1748, 1761
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 1205, 1530
BsiHKCI CYCGRG 2 cut(s) 194, 1250
BsiSI CCGG 4 cut(s) 11, 978, 1650, 1690
BslFI GGGAC 3 cut(s) 130, 1055, 2160
BslI CCNNNNNNNGG 4 cut(s) 610, 1719, 1743, 1768
BsmAI GTCTC 5 cut(s) 45, 155, 881, 1373, 1828
BsmFI GGGAC 3 cut(s) 130, 1055, 2160
BsmI GAATGC 3 cut(s) 185, 1490, 2014
BsnI GGCC 3 cut(s) 1712, 1748, 1761
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 2 cut(s) 194, 1250
Bsp1286I GDGCHC 4 cut(s) 618, 1205, 1530, 2158
Bsp1407I TGTACA 2 cut(s) 744, 1586
BspACI CCGC 4 cut(s) 37, 258, 525, 2239
BspANI GGCC 3 cut(s) 1712, 1748, 1761
BspCNI CTCAG 6 cut(s) 36, 157, 846, 906, 916, 1542
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 200, 1043, 1747, 2148
BspMAI CTGCAG 2 cut(s) 394, 2170
BspMI ACCTGC 2 cut(s) 1694, 2159
BspPI GGATC 8 cut(s) 648, 1016, 1020, 1562, 1598, 1910, 1925, 2170
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 1446, 1855, 2030
BsrFI RCCGGY 1 cut(s) 1689
BsrGI TGTACA 2 cut(s) 744, 1586
BsrI ACTGG 3 cut(s) 667, 1439, 1458
BssAI RCCGGY 1 cut(s) 1689
BssECI CCNNGG 3 cut(s) 193, 2158, 2178
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 2055
BssT1I CCWWGG 2 cut(s) 2158, 2178
Bst2BI CACGAG 1 cut(s) 2055
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 8 cut(s) 361, 1123, 1207, 1415, 1426, 1544, 1644, 1982
Bst6I CTCTTC 3 cut(s) 125, 586, 2200
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 2 cut(s) 744, 1586
BstC8I GCNNGC 3 cut(s) 1168, 1505, 2064
BstDEI CTNAG 9 cut(s) 44, 165, 786, 833, 893, 924, 1529, 1548, 1763
BstENI CCTNNNNNAGG 1 cut(s) 1766
BstF5I GGATG 8 cut(s) 94, 986, 1024, 1370, 1496, 1646, 1726, 1876
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 5 cut(s) 45, 155, 881, 1373, 1828
BstMWI GCNNNNNNNGC 8 cut(s) 182, 509, 518, 920, 1457, 1466, 1709, 1785
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 3 cut(s) 674, 1783, 2070
BstSCI CCNGG 2 cut(s) 10, 583
BstSFI CTRYAG 5 cut(s) 390, 1411, 1540, 1941, 2166
BstSLI GKGCMC 3 cut(s) 618, 1205, 2158
BstV1I GCAGC 8 cut(s) 404, 533, 798, 988, 1286, 1287, 1456, 2047
BstV2I GAAGAC 1 cut(s) 1983
BstX2I RGATCY 7 cut(s) 640, 1348, 1864, 1882, 1930, 2125, 2162
BstXI CCANNNNNNTGG 1 cut(s) 1391
BstYI RGATCY 7 cut(s) 640, 1348, 1864, 1882, 1930, 2125, 2162
Bsu15I ATCGAT 1 cut(s) 207
Bsu36I CCTNAGG 2 cut(s) 1548, 1763
BsuI GTATCC 2 cut(s) 413, 1348
BsuRI GGCC 3 cut(s) 1712, 1748, 1761
BsuTUI ATCGAT 1 cut(s) 207
BtgZI GCGATG 2 cut(s) 191, 1986
BtsCI GGATG 8 cut(s) 94, 986, 1024, 1370, 1496, 1646, 1726, 1876
BtsI GCAGTG 4 cut(s) 658, 1045, 1606, 1660
BtsIMutI CAGTG 6 cut(s) 658, 1045, 1203, 1451, 1606, 1660
BveI ACCTGC 2 cut(s) 1694, 2159
Cac8I GCNNGC 3 cut(s) 1168, 1505, 2064
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 1689
Cfr13I GGNCC 6 cut(s) 1042, 1195, 1436, 1746, 1841, 2147
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 3 cut(s) 745, 1587, 1640
CviAII CATG 8 cut(s) 671, 826, 1331, 1631, 1738, 1742, 1780, 2067
CviQI GTAC 3 cut(s) 745, 1587, 1640
DdeI CTNAG 9 cut(s) 44, 165, 786, 833, 893, 924, 1529, 1548, 1763
Eam1104I CTCTTC 3 cut(s) 125, 586, 2200
EarI CTCTTC 3 cut(s) 125, 586, 2200
Eco130I CCWWGG 2 cut(s) 2158, 2178
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 5 cut(s) 1042, 1195, 1436, 1841, 2147
Eco57I CTGAAG 1 cut(s) 498
Eco81I CCTNAGG 2 cut(s) 1548, 1763
Eco88I CYCGRG 2 cut(s) 194, 1250
EcoNI CCTNNNNNAGG 1 cut(s) 1766
EcoO109I RGGNCCY 2 cut(s) 1746, 2147
EcoRI GAATTC 1 cut(s) 1397
EcoRII CCWGG 1 cut(s) 583
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 2158, 2178
EcoT22I ATGCAT 1 cut(s) 1743
ErhI CCWWGG 2 cut(s) 2158, 2178
FaeI CATG 8 cut(s) 674, 829, 1334, 1634, 1741, 1745, 1783, 2070
FalI AAGNNNNNCTT 2 cut(s) 1254, 1286
FaqI GGGAC 3 cut(s) 130, 1055, 2160
FatI CATG 8 cut(s) 670, 825, 1330, 1630, 1737, 1741, 1779, 2066
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 2 cut(s) 448, 1583
FokI GGATG 8 cut(s) 101, 993, 1031, 1377, 1483, 1633, 1713, 1863
FspBI CTAG 6 cut(s) 518, 696, 915, 1886, 2151, 2159
GlaI GCGC 1 cut(s) 213
GsaI CCCAGC 2 cut(s) 240, 2238
GsuI CTGGAG 3 cut(s) 1080, 1452, 1482
HaeIII GGCC 3 cut(s) 1712, 1748, 1761
HapII CCGG 4 cut(s) 11, 978, 1650, 1690
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 8 cut(s) 674, 829, 1334, 1634, 1741, 1745, 1783, 2070
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 6 cut(s) 79, 292, 577, 782, 1279, 2221
HpaII CCGG 4 cut(s) 11, 978, 1650, 1690
HphI GGTGA 3 cut(s) 380, 1718, 2095
Hpy166II GTNNAC 3 cut(s) 598, 1203, 2002
Hpy188I TCNGA 7 cut(s) 45, 326, 500, 1224, 1532, 1637, 1920
Hpy8I GTNNAC 3 cut(s) 598, 1203, 2002
HpyAV CCTTC 6 cut(s) 46, 256, 473, 563, 1088, 1759
HpyCH4III ACNGT 8 cut(s) 361, 1123, 1207, 1415, 1426, 1544, 1644, 1982
HpyCH4IV ACGT 2 cut(s) 1358, 1390
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 509, 518, 920, 1457, 1466, 1709, 1785
HpyF3I CTNAG 9 cut(s) 44, 165, 786, 833, 893, 924, 1529, 1548, 1763
HpySE526I ACGT 2 cut(s) 1358, 1390
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 8 cut(s) 674, 829, 1334, 1634, 1741, 1745, 1783, 2070
HspAI GCGC 1 cut(s) 212
LmnI GCTCC 3 cut(s) 265, 500, 1968
Lsp1109I GCAGC 8 cut(s) 404, 533, 798, 988, 1286, 1287, 1456, 2047
LweI GCATC 5 cut(s) 199, 541, 958, 1781, 1885
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 6 cut(s) 518, 696, 915, 1886, 2151, 2159
MaeII ACGT 2 cut(s) 1358, 1390
MaeIII GTNAC 4 cut(s) 1415, 1655, 2083, 2171
MboII GAAGA 9 cut(s) 61, 139, 142, 603, 1358, 1940, 1988, 2108, 2217
MflI RGATCY 7 cut(s) 640, 1348, 1864, 1882, 1930, 2125, 2162
MhlI GDGCHC 4 cut(s) 618, 1205, 1530, 2158
MluCI AATT 7 cut(s) 228, 427, 958, 1066, 1241, 1397, 2184
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 3 cut(s) 478, 1819, 1943
Mph1103I ATGCAT 1 cut(s) 1743
MroXI GAANNNNTTC 3 cut(s) 628, 1098, 1401
MseI TTAA 7 cut(s) 231, 426, 804, 1239, 1520, 1986, 2021
MslI CAYNNNNRTG 3 cut(s) 111, 1483, 1559
MspI CCGG 4 cut(s) 11, 978, 1650, 1690
MspR9I CCNGG 2 cut(s) 12, 585
Mva1269I GAATGC 3 cut(s) 185, 1490, 2014
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 8 cut(s) 182, 509, 518, 920, 1457, 1466, 1709, 1785
NciI CCSGG 1 cut(s) 12
NdeI CATATG 2 cut(s) 448, 1583
NlaIII CATG 8 cut(s) 674, 829, 1334, 1634, 1741, 1745, 1783, 2070
NlaIV GGNNCC 4 cut(s) 200, 1043, 1747, 2148
NmuCI GTSAC 2 cut(s) 1655, 2083
NsiI ATGCAT 1 cut(s) 1743
NspI RCATGY 3 cut(s) 674, 1783, 2070
PaqCI CACCTGC 1 cut(s) 1694
PctI GAATGC 3 cut(s) 185, 1490, 2014
PdmI GAANNNNTTC 3 cut(s) 628, 1098, 1401
PfeI GAWTC 5 cut(s) 79, 292, 577, 1279, 2221
PflFI GACNNNGTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 610
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 2147
PshBI ATTAAT 2 cut(s) 231, 426
PsiI TTATAA 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 2147
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 2 cut(s) 236, 2234
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 4 cut(s) 200, 1043, 1747, 2148
PspPI GGNCC 6 cut(s) 1042, 1195, 1436, 1746, 1841, 2147
PspPPI RGGWCCY 1 cut(s) 2147
PstI CTGCAG 2 cut(s) 394, 2170
PsuI RGATCY 7 cut(s) 640, 1348, 1864, 1882, 1930, 2125, 2162
PsyI GACNNNGTC 1 cut(s) 821
RsaI GTAC 3 cut(s) 746, 1588, 1641
RsaNI GTAC 3 cut(s) 745, 1587, 1640
RseI CAYNNNNRTG 3 cut(s) 111, 1483, 1559
SaqAI TTAA 7 cut(s) 231, 426, 804, 1239, 1520, 1986, 2021
Sau96I GGNCC 6 cut(s) 1042, 1195, 1436, 1746, 1841, 2147
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 12, 585
SduI GDGCHC 4 cut(s) 618, 1205, 1530, 2158
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 5 cut(s) 199, 541, 958, 1781, 1885
SfcI CTRYAG 5 cut(s) 390, 1411, 1540, 1941, 2166
SinI GGWCC 5 cut(s) 1042, 1195, 1436, 1841, 2147
SmiMI CAYNNNNRTG 3 cut(s) 111, 1483, 1559
SmlI CTYRAG 2 cut(s) 218, 1753
SmoI CTYRAG 2 cut(s) 218, 1753
Sse9I AATT 7 cut(s) 228, 427, 958, 1066, 1241, 1397, 2184
SsiI CCGC 4 cut(s) 37, 258, 525, 2239
SspMI CTAG 6 cut(s) 518, 696, 915, 1886, 2151, 2159
StyD4I CCNGG 2 cut(s) 10, 583
StyI CCWWGG 2 cut(s) 2158, 2178
TaaI ACNGT 8 cut(s) 361, 1123, 1207, 1415, 1426, 1544, 1644, 1982
TaiI ACGT 2 cut(s) 1361, 1393
TaqI TCGA 7 cut(s) 171, 207, 580, 780, 792, 1183, 1513
TasI AATT 7 cut(s) 228, 427, 958, 1066, 1241, 1397, 2184
TatI WGTACW 3 cut(s) 744, 1586, 1639
TauI GCSGC 2 cut(s) 527, 2242
TfiI GAWTC 5 cut(s) 79, 292, 577, 1279, 2221
Tru1I TTAA 7 cut(s) 231, 426, 804, 1239, 1520, 1986, 2021
Tru9I TTAA 7 cut(s) 231, 426, 804, 1239, 1520, 1986, 2021
TscAI CASTG 6 cut(s) 658, 1052, 1210, 1458, 1606, 1660
TseFI GTSAC 2 cut(s) 1655, 2083
TseI GCWGC 8 cut(s) 392, 521, 811, 1001, 1274, 1300, 1469, 2035
Tsp45I GTSAC 2 cut(s) 1655, 2083
TspDTI ATGAA 7 cut(s) 707, 1044, 1389, 1499, 1611, 1893, 1989
TspRI CASTG 6 cut(s) 658, 1052, 1210, 1458, 1606, 1660
Tth111I GACNNNGTC 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 1201
VpaK11BI GGWCC 5 cut(s) 1042, 1195, 1436, 1841, 2147
VspI ATTAAT 2 cut(s) 231, 426
XagI CCTNNNNNAGG 1 cut(s) 1766
XapI RAATTY 3 cut(s) 958, 1241, 1397
XceI RCATGY 3 cut(s) 674, 1783, 2070
XcmI CCANNNNNNNNNTGG 1 cut(s) 1427
XmaJI CCTAGG 1 cut(s) 2158
XmnI GAANNNNTTC 3 cut(s) 628, 1098, 1401
XspI CTAG 6 cut(s) 518, 696, 915, 1886, 2151, 2159
Zsp2I ATGCAT 1 cut(s) 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.