Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010932

Physical Location & Seq

Genomic Coordinates Forward (+)

29654800 .. 29658278

Gene Structure 3479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGGAGACGCCGGGTTCTGCAATAAAGCGGTCTCTGAGGAAGAAGGTCGGTTTGCGAAGTTATGATGAGAATCTAATGGATGATCTCATAGAGAAGCATTTGGGTGGAACTTTTAAGAAGAAGAGTAGGACAAAGGAGGATTTGGAGAAAGAGACTGAGACCGAGGCGATGATAGCATTCTCCCTCGGGTTCCCTATCGATGCGCTTCTTGAGGAGGAAATTAATGCTGGGGTGGTCAAAGAGTTAGGCGGGAAGGAGCAGAATGATTATATTGTTGTGAGGAATCATATTTTAGCAAGATGGAGGAGTAATGTCCGAGTGTGGCTCACAAAAGCACAGATTAGAGAAACCGTGAGTGGTGAGTATGGGGATTTGATATCTGCTGCTTATGATTATCTTTTTTATAATGGATACATTAATTTTGGGGTTGCACCATCATATGTGGCATATATGCCAGACGAGGCAACTGAAGGGTCTGTTGTTATTGTCGGAGCAGGACTTGCTGGACTAGCAGCCGCAAGGCATCTTATGTCATTGGGTTTCAAAGTGGTTGTTTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTACACCCAAAAGATGGGGCACAATGGCAACTTTTCTGCTGTGGATCTTGGTGGCAGTGTCATTACTGGCATCCATGCTAACCCTCTTGGAGTTTTGGCTAGGCAACTTTCTATTCCGCTTCATAAGGTCAGGGATAACTGCCCCTTGTACAAGCCTGATGGTATGCCTGTTGATAAGGAAATCGACTCTAAGATTGAAGTCATCTTTAATAAGCTGCTTGACAAAGTCATGGAACTCAGGCAAACTATGGGTGGGTTTGCAAATGATATTTCTCTGGGTTCAGTTTTGGAGACACTCAGGCAGTTGTATGCTGTTGCTAGAAGTGCTGAGGAGAGGCAACTTCTTGATTGGCATCTCGCAAATTTGGAATATGCAAATGCCGGATGTCTATCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGGGACCACTGCTTTCTCGCTGGAGGTAATTGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCTATTTTCTATGGAAAGACTGTGAATACCATTCGTTATGCAGATGGAGGGGTTGAAGTGATCGCAGGCGACCAAGTGTTTCGAGGGGATATGGTCCTGTGCACCGTTCCTCTTGGAGTTCTGAAAAAGGGGGCTATTAAATTTGAACCCGAGTTGCCCCAAGAAAAACTTGCAGCGATTCAAAGGTTGGGGTTTGGGCTGCTGAACAAAGTAGCTATGGTTTTTCCTCATGTTTTCTGGGGAGAAGATCTGGATACTTTTGGATGTCTCAATGAACACAGCCAGAAACGTGGAGAATTCTTTCTGTTCTACAGTTACCATACTGTTTCTGGAGGTCCAGTTCTCATTGCACTGGTGGCTGGAGAAGCTGCACAAACATTTGAATGCACAGAGCCATCCAGCTTGCTTCATCGAGTTTTAAGTGTGCTCAGAGGTATCTACAGTCCTAAGGGCATTGTCGTGCCTGATCCAATACAAACCATATGTACAAGATGGGGCAGTGATCCCCTTTCCTATGGTTCATACTCTCATGTCAGAGTACAGTCATCCGGCAGTGACTATGATTTACTTGCAGAAAATGTGGGAAACCGGCTGTTCTTTGCAGGTGAGGCCACAAATAGGCAACATCCAGCTACCATGCATGGGGCCTTCTTGAGTGGCCTAAGAGAGGCATCGTGCATGTATCGCGCCACAAGGAGTAGCCAAAACAATGTCAAGAAAGTCTCACAAAAGAATGTTGGACCAAGCAATGATATGCTGGTAGATCTATTCAAGCATCCAGATCTAGCATTTGGGAAGTTTTCATTTGTATTTGATCCTACAACAGAAGATCCAAAATCTGTAGGGCTTATGAGAGTTAGTATTGGGAGCGATGAAGACAGTTTTAATCAGCAGTTCGTAAACAGCTTCCAGCATTCCTTAAACCTACCATTGCAGCTTTATGCTGTTGTATCTCGTGAGCAAGCATGTGGGTTAGAGCTGGTGACAGGAGGAGAAGAAAGTAGGTTATCATACTTGGTAAAAGATCTTGGTTTGCAACTGATGGGACCTAGTGCCCTAGGATCTGCAGGTAACTCCTTGGCAATTAGTATTTTCAATGCACGAAGAGGCAGGGGAAAGAATCGTATGTTTGCTGGGCGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

745

Amino Acids

81.92

Weight (kDa)

6.31

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	71 - 141	8.5e-14	SWIRM domain
Pyr_redox_2	PF07992	159 - 201	6.1e-06	Pyridine nucleotide-disulphide oxidoreductase
DAO	PF01266	160 - 194	1.5e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	162 - 223	1.2e-12	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	167 - 590	5.3e-80	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13682
fragaria_vesca	FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica	MD03G1220300.v1.1
prunus_persica	Prupe.4G188600_v2.0.a1
pyrus_communis	pycom03g16960
rosa_chinensis	RchiOBHm_Chr5g0035141
rosa_laevigata	RLG00000033600 RLG00000033601
rosa_multiflora	Rmu_sc0000879.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045270
rosa_rugosa	Rorug05G0150300
rosa_samantha	Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana	Rw5G022210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AarI	CACCTGC	1 cut(s)	1685
Acc36I	ACCTGC	2 cut(s)	1685, 2150
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccII	CGCG	1 cut(s)	1779
AciI	CCGC	5 cut(s)	28, 249, 516, 704, 2230
AclWI	GGATC	8 cut(s)	639, 1007, 1011, 1553, 1589, 1901, 1916, 2161
AcsI	RAATTY	3 cut(s)	949, 1232, 1388
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	737, 1579, 1632
AfiI	CCNNNNNNNGG	4 cut(s)	601, 1710, 1734, 1759
AgsI	TTSAA	8 cut(s)	544, 785, 1148, 1238, 1274, 1475, 1864, 2188
AjnI	CCWGG	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	1416, 1448
AluBI	AGCT	8 cut(s)	802, 1307, 1460, 1494, 1724, 1998, 2029, 2071
AluI	AGCT	8 cut(s)	802, 1307, 1460, 1494, 1724, 1998, 2029, 2071
Alw21I	GWGCWC	2 cut(s)	1196, 1521
Alw26I	GTCTC	6 cut(s)	36, 146, 152, 872, 1364, 1819
Alw44I	GTGCAC	1 cut(s)	1192
AlwI	GGATC	8 cut(s)	639, 1007, 1011, 1553, 1589, 1901, 1916, 2161
Ama87I	CYCGRG	2 cut(s)	185, 1241
AoxI	GGCC	3 cut(s)	1701, 1737, 1750
ApaLI	GTGCAC	1 cut(s)	1192
ApeKI	GCWGC	8 cut(s)	383, 512, 802, 992, 1265, 1291, 1460, 2026
ApoI	RAATTY	3 cut(s)	949, 1232, 1388
AseI	ATTAAT	2 cut(s)	222, 417
Asp700I	GAANNNNTTC	2 cut(s)	1089, 1392
AspA2I	CCTAGG	1 cut(s)	2149
AspLEI	GCGC	2 cut(s)	205, 1781
AspS9I	GGNCC	6 cut(s)	1033, 1186, 1427, 1737, 1832, 2138
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	3 cut(s)	371, 1709, 2086
AvaI	CYCGRG	2 cut(s)	185, 1241
AvaII	GGWCC	5 cut(s)	1033, 1186, 1427, 1832, 2138
AvrII	CCTAGG	1 cut(s)	2149
AxyI	CCTNAGG	1 cut(s)	1539
BaeGI	GKGCMC	3 cut(s)	609, 1196, 2149
BauI	CACGAG	1 cut(s)	2046
BbsI	GAAGAC	1 cut(s)	1974
Bbv12I	GWGCWC	2 cut(s)	1196, 1521
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	8 cut(s)	370, 524, 789, 979, 1277, 1278, 1447, 2038
BccI	CCATC	8 cut(s)	294, 442, 595, 740, 1130, 1495, 1578, 2128
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	2 cut(s)	404, 1339
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	6 cut(s)	36, 146, 152, 872, 1364, 1819
BfaI	CTAG	6 cut(s)	509, 687, 906, 1877, 2142, 2150
BfmI	CTRYAG	4 cut(s)	1402, 1531, 1932, 2157
BfuAI	ACCTGC	2 cut(s)	1685, 2150
BfuI	GTATCC	2 cut(s)	404, 1339
BglII	AGATCT	4 cut(s)	1339, 1855, 1873, 2116
BlnI	CCTAGG	1 cut(s)	2149
Bme1390I	CCNGG	2 cut(s)	12, 576
Bme18I	GGWCC	5 cut(s)	1033, 1186, 1427, 1832, 2138
BmeT110I	CYCGRG	2 cut(s)	185, 1241
BmgT120I	GGNCC	6 cut(s)	1033, 1186, 1427, 1737, 1832, 2138
BmiI	GGNNCC	4 cut(s)	191, 1034, 1738, 2139
BmrFI	CCNGG	2 cut(s)	12, 576
BmsI	GCATC	6 cut(s)	190, 532, 666, 949, 1772, 1876
BpiI	GAAGAC	1 cut(s)	1974
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpmI	CTGGAG	3 cut(s)	1071, 1443, 1473
Bpu10I	CCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	230, 1765
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	3 cut(s)	69, 939, 976
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	2 cut(s)	36, 152
BsaJI	CCNNGG	4 cut(s)	162, 184, 2149, 2169
BsaXI	ACNNNNNCTCC	2 cut(s)	1416, 1446
Bsc4I	CCNNNNNNNGG	4 cut(s)	601, 1710, 1734, 1759
Bse118I	RCCGGY	1 cut(s)	1680
Bse1I	ACTGG	3 cut(s)	658, 1430, 1449
Bse21I	CCTNAGG	1 cut(s)	1539
Bse3DI	GCAATG	3 cut(s)	1437, 1846, 2021
Bse8I	GATNNNNATC	3 cut(s)	69, 939, 976
BseBI	CCWGG	1 cut(s)	576
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	162, 184, 2149, 2169
BseGI	GGATG	9 cut(s)	85, 657, 977, 1015, 1361, 1487, 1637, 1717, 1867
BseJI	GATNNNNATC	3 cut(s)	69, 939, 976
BseLI	CCNNNNNNNGG	4 cut(s)	601, 1710, 1734, 1759
BseMI	GCAATG	3 cut(s)	1437, 1846, 2021
BseMII	CTCAG	6 cut(s)	26, 147, 838, 898, 906, 1534
BseNI	ACTGG	3 cut(s)	658, 1430, 1449
BseRI	GAGGAG	4 cut(s)	227, 319, 932, 2097
BseSI	GKGCMC	3 cut(s)	609, 1196, 2149
BseXI	GCAGC	8 cut(s)	370, 524, 789, 979, 1277, 1278, 1447, 2038
BseYI	CCCAGC	2 cut(s)	227, 2225
BsgI	GTGCAG	1 cut(s)	1446
Bsh1236I	CGCG	1 cut(s)	1779
BshFI	GGCC	3 cut(s)	1703, 1739, 1752
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	1196, 1521
BsiHKCI	CYCGRG	2 cut(s)	185, 1241
BsiSI	CCGG	4 cut(s)	11, 969, 1641, 1681
BslFI	GGGAC	2 cut(s)	1046, 2151
BslI	CCNNNNNNNGG	4 cut(s)	601, 1710, 1734, 1759
BsmAI	GTCTC	6 cut(s)	36, 146, 152, 872, 1364, 1819
BsmFI	GGGAC	2 cut(s)	1046, 2151
BsmI	GAATGC	3 cut(s)	176, 1481, 2005
BsnI	GGCC	3 cut(s)	1703, 1739, 1752
Bso31I	GGTCTC	2 cut(s)	36, 152
BsoBI	CYCGRG	2 cut(s)	185, 1241
Bsp1286I	GDGCHC	4 cut(s)	609, 1196, 1521, 2149
Bsp1407I	TGTACA	2 cut(s)	735, 1577
BspACI	CCGC	5 cut(s)	28, 249, 516, 704, 2230
BspANI	GGCC	3 cut(s)	1703, 1739, 1752
BspCNI	CTCAG	6 cut(s)	27, 148, 837, 897, 907, 1533
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	1779
BspLI	GGNNCC	4 cut(s)	191, 1034, 1738, 2139
BspMAI	CTGCAG	1 cut(s)	2161
BspMI	ACCTGC	2 cut(s)	1685, 2150
BspPI	GGATC	8 cut(s)	639, 1007, 1011, 1553, 1589, 1901, 1916, 2161
BspTNI	GGTCTC	2 cut(s)	36, 152
BsrDI	GCAATG	3 cut(s)	1437, 1846, 2021
BsrFI	RCCGGY	1 cut(s)	1680
BsrGI	TGTACA	2 cut(s)	735, 1577
BsrI	ACTGG	3 cut(s)	658, 1430, 1449
BssAI	RCCGGY	1 cut(s)	1680
BssECI	CCNNGG	4 cut(s)	162, 184, 2149, 2169
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2046
BssT1I	CCWWGG	2 cut(s)	2149, 2169
Bst2BI	CACGAG	1 cut(s)	2046
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	8 cut(s)	352, 1114, 1198, 1406, 1417, 1535, 1635, 1973
Bst6I	CTCTTC	3 cut(s)	116, 577, 2191
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	2 cut(s)	735, 1577
BstC8I	GCNNGC	3 cut(s)	1159, 1496, 2055
BstDEI	CTNAG	9 cut(s)	35, 156, 777, 824, 884, 915, 1520, 1539, 1754
BstENI	CCTNNNNNAGG	1 cut(s)	1757
BstF5I	GGATG	9 cut(s)	85, 657, 977, 1015, 1361, 1487, 1637, 1717, 1867
BstFNI	CGCG	1 cut(s)	1779
BstHHI	GCGC	2 cut(s)	205, 1781
BstMAI	GTCTC	6 cut(s)	36, 146, 152, 872, 1364, 1819
BstMWI	GCNNNNNNNGC	8 cut(s)	173, 500, 509, 911, 1448, 1457, 1700, 1776
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	2 cut(s)	1774, 2061
BstSCI	CCNGG	2 cut(s)	10, 574
BstSFI	CTRYAG	4 cut(s)	1402, 1531, 1932, 2157
BstSLI	GKGCMC	3 cut(s)	609, 1196, 2149
BstUI	CGCG	1 cut(s)	1779
BstV1I	GCAGC	8 cut(s)	370, 524, 789, 979, 1277, 1278, 1447, 2038
BstV2I	GAAGAC	1 cut(s)	1974
BstX2I	RGATCY	7 cut(s)	631, 1339, 1855, 1873, 1921, 2116, 2153
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	7 cut(s)	631, 1339, 1855, 1873, 1921, 2116, 2153
Bsu15I	ATCGAT	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	1539
BsuI	GTATCC	2 cut(s)	404, 1339
BsuRI	GGCC	3 cut(s)	1703, 1739, 1752
BsuTUI	ATCGAT	1 cut(s)	198
BtgZI	GCGATG	2 cut(s)	182, 1977
BtsCI	GGATG	9 cut(s)	85, 657, 977, 1015, 1361, 1487, 1637, 1717, 1867
BtsI	GCAGTG	4 cut(s)	649, 1036, 1597, 1651
BtsIMutI	CAGTG	5 cut(s)	649, 1036, 1442, 1597, 1651
BveI	ACCTGC	2 cut(s)	1685, 2150
Cac8I	GCNNGC	3 cut(s)	1159, 1496, 2055
CfoI	GCGC	2 cut(s)	205, 1781
Cfr10I	RCCGGY	1 cut(s)	1680
Cfr13I	GGNCC	6 cut(s)	1033, 1186, 1427, 1737, 1832, 2138
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	736, 1578, 1631
CviAII	CATG	8 cut(s)	662, 817, 1322, 1622, 1729, 1733, 1771, 2058
CviQI	GTAC	3 cut(s)	736, 1578, 1631
DdeI	CTNAG	9 cut(s)	35, 156, 777, 824, 884, 915, 1520, 1539, 1754
Eam1104I	CTCTTC	3 cut(s)	116, 577, 2191
EarI	CTCTTC	3 cut(s)	116, 577, 2191
Eco130I	CCWWGG	2 cut(s)	2149, 2169
Eco31I	GGTCTC	2 cut(s)	36, 152
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	5 cut(s)	1033, 1186, 1427, 1832, 2138
Eco57I	CTGAAG	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	1539
Eco88I	CYCGRG	2 cut(s)	185, 1241
EcoNI	CCTNNNNNAGG	1 cut(s)	1757
EcoO109I	RGGNCCY	2 cut(s)	1737, 2138
EcoRI	GAATTC	1 cut(s)	1388
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	2149, 2169
EcoT22I	ATGCAT	1 cut(s)	1734
ErhI	CCWWGG	2 cut(s)	2149, 2169
FaeI	CATG	8 cut(s)	665, 820, 1325, 1625, 1732, 1736, 1774, 2061
FalI	AAGNNNNNCTT	2 cut(s)	1245, 1277
FaqI	GGGAC	2 cut(s)	1046, 2151
FatI	CATG	8 cut(s)	661, 816, 1321, 1621, 1728, 1732, 1770, 2057
FauI	CCCGC	1 cut(s)	242
FauNDI	CATATG	2 cut(s)	439, 1574
FokI	GGATG	9 cut(s)	92, 644, 984, 1022, 1368, 1474, 1624, 1704, 1854
FspBI	CTAG	6 cut(s)	509, 687, 906, 1877, 2142, 2150
GlaI	GCGC	2 cut(s)	204, 1780
GsaI	CCCAGC	2 cut(s)	231, 2229
GsuI	CTGGAG	3 cut(s)	1071, 1443, 1473
HaeIII	GGCC	3 cut(s)	1703, 1739, 1752
HapII	CCGG	4 cut(s)	11, 969, 1641, 1681
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	205, 1781
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	8 cut(s)	665, 820, 1325, 1625, 1732, 1736, 1774, 2061
Hin6I	GCGC	2 cut(s)	203, 1779
HinP1I	GCGC	2 cut(s)	203, 1779
HinfI	GANTC	6 cut(s)	70, 283, 568, 773, 1270, 2212
HpaII	CCGG	4 cut(s)	11, 969, 1641, 1681
HphI	GGTGA	3 cut(s)	371, 1709, 2086
Hpy166II	GTNNAC	3 cut(s)	589, 1194, 1993
Hpy188I	TCNGA	6 cut(s)	36, 317, 491, 1215, 1523, 1628
Hpy188III	TCNNGA	9 cut(s)	209, 932, 1007, 1343, 1422, 1744, 1807, 1871, 2048
Hpy8I	GTNNAC	3 cut(s)	589, 1194, 1993
HpyAV	CCTTC	6 cut(s)	37, 247, 464, 554, 1079, 1750
HpyCH4III	ACNGT	8 cut(s)	352, 1114, 1198, 1406, 1417, 1535, 1635, 1973
HpyCH4IV	ACGT	1 cut(s)	1381
HpyF10VI	GCNNNNNNNGC	8 cut(s)	173, 500, 509, 911, 1448, 1457, 1700, 1776
HpyF3I	CTNAG	9 cut(s)	35, 156, 777, 824, 884, 915, 1520, 1539, 1754
HpySE526I	ACGT	1 cut(s)	1381
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	8 cut(s)	665, 820, 1325, 1625, 1732, 1736, 1774, 2061
HspAI	GCGC	2 cut(s)	203, 1779
LmnI	GCTCC	3 cut(s)	256, 491, 1959
Lsp1109I	GCAGC	8 cut(s)	370, 524, 789, 979, 1277, 1278, 1447, 2038
LweI	GCATC	6 cut(s)	190, 532, 666, 949, 1772, 1876
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	6 cut(s)	509, 687, 906, 1877, 2142, 2150
MaeII	ACGT	1 cut(s)	1381
MaeIII	GTNAC	4 cut(s)	1406, 1646, 2074, 2162
MboII	GAAGA	9 cut(s)	52, 130, 133, 594, 1349, 1931, 1979, 2099, 2208
MflI	RGATCY	7 cut(s)	631, 1339, 1855, 1873, 1921, 2116, 2153
MhlI	GDGCHC	4 cut(s)	609, 1196, 1521, 2149
MluCI	AATT	7 cut(s)	219, 418, 949, 1057, 1232, 1388, 2175
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	2 cut(s)	469, 1810
Mph1103I	ATGCAT	1 cut(s)	1734
MroXI	GAANNNNTTC	2 cut(s)	1089, 1392
MseI	TTAA	8 cut(s)	114, 222, 417, 795, 1230, 1511, 1977, 2012
MslI	CAYNNNNRTG	3 cut(s)	102, 1474, 1550
MspI	CCGG	4 cut(s)	11, 969, 1641, 1681
MspR9I	CCNGG	2 cut(s)	12, 576
Mva1269I	GAATGC	3 cut(s)	176, 1481, 2005
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	1779
MwoI	GCNNNNNNNGC	8 cut(s)	173, 500, 509, 911, 1448, 1457, 1700, 1776
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	2 cut(s)	439, 1574
NlaIII	CATG	8 cut(s)	665, 820, 1325, 1625, 1732, 1736, 1774, 2061
NlaIV	GGNNCC	4 cut(s)	191, 1034, 1738, 2139
NmuCI	GTSAC	2 cut(s)	1646, 2074
NsiI	ATGCAT	1 cut(s)	1734
NspI	RCATGY	2 cut(s)	1774, 2061
PaqCI	CACCTGC	1 cut(s)	1685
PctI	GAATGC	3 cut(s)	176, 1481, 2005
PdmI	GAANNNNTTC	2 cut(s)	1089, 1392
PfeI	GAWTC	5 cut(s)	70, 283, 568, 1270, 2212
PflFI	GACNNNGTC	1 cut(s)	812
PflMI	CCANNNNNTGG	1 cut(s)	601
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
PpuMI	RGGWCCY	1 cut(s)	2138
PshBI	ATTAAT	2 cut(s)	222, 417
PsiI	TTATAA	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	2138
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	2 cut(s)	227, 2225
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	4 cut(s)	191, 1034, 1738, 2139
PspPI	GGNCC	6 cut(s)	1033, 1186, 1427, 1737, 1832, 2138
PspPPI	RGGWCCY	1 cut(s)	2138
PstI	CTGCAG	1 cut(s)	2161
PsuI	RGATCY	7 cut(s)	631, 1339, 1855, 1873, 1921, 2116, 2153
PsyI	GACNNNGTC	1 cut(s)	812
RsaI	GTAC	3 cut(s)	737, 1579, 1632
RsaNI	GTAC	3 cut(s)	736, 1578, 1631
RseI	CAYNNNNRTG	3 cut(s)	102, 1474, 1550
SaqAI	TTAA	8 cut(s)	114, 222, 417, 795, 1230, 1511, 1977, 2012
Sau96I	GGNCC	6 cut(s)	1033, 1186, 1427, 1737, 1832, 2138
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	2 cut(s)	12, 576
SduI	GDGCHC	4 cut(s)	609, 1196, 1521, 2149
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	6 cut(s)	190, 532, 666, 949, 1772, 1876
SfcI	CTRYAG	4 cut(s)	1402, 1531, 1932, 2157
SinI	GGWCC	5 cut(s)	1033, 1186, 1427, 1832, 2138
SmiMI	CAYNNNNRTG	3 cut(s)	102, 1474, 1550
SmlI	CTYRAG	2 cut(s)	209, 1744
SmoI	CTYRAG	2 cut(s)	209, 1744
Sse9I	AATT	7 cut(s)	219, 418, 949, 1057, 1232, 1388, 2175
SsiI	CCGC	5 cut(s)	28, 249, 516, 704, 2230
SspMI	CTAG	6 cut(s)	509, 687, 906, 1877, 2142, 2150
StyD4I	CCNGG	2 cut(s)	10, 574
StyI	CCWWGG	2 cut(s)	2149, 2169
TaaI	ACNGT	8 cut(s)	352, 1114, 1198, 1406, 1417, 1535, 1635, 1973
TaiI	ACGT	1 cut(s)	1384
TaqI	TCGA	5 cut(s)	198, 571, 771, 1174, 1504
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	7 cut(s)	219, 418, 949, 1057, 1232, 1388, 2175
TatI	WGTACW	3 cut(s)	735, 1577, 1630
TauI	GCSGC	2 cut(s)	518, 2233
TfiI	GAWTC	5 cut(s)	70, 283, 568, 1270, 2212
Tru1I	TTAA	8 cut(s)	114, 222, 417, 795, 1230, 1511, 1977, 2012
Tru9I	TTAA	8 cut(s)	114, 222, 417, 795, 1230, 1511, 1977, 2012
TscAI	CASTG	5 cut(s)	649, 1043, 1449, 1597, 1651
TseFI	GTSAC	2 cut(s)	1646, 2074
TseI	GCWGC	8 cut(s)	383, 512, 802, 992, 1265, 1291, 1460, 2026
Tsp45I	GTSAC	2 cut(s)	1646, 2074
TspDTI	ATGAA	7 cut(s)	698, 1035, 1380, 1490, 1602, 1884, 1980
TspRI	CASTG	5 cut(s)	649, 1043, 1449, 1597, 1651
Tth111I	GACNNNGTC	1 cut(s)	812
Van91I	CCANNNNNTGG	1 cut(s)	601
VneI	GTGCAC	1 cut(s)	1192
VpaK11BI	GGWCC	5 cut(s)	1033, 1186, 1427, 1832, 2138
VspI	ATTAAT	2 cut(s)	222, 417
XagI	CCTNNNNNAGG	1 cut(s)	1757
XapI	RAATTY	3 cut(s)	949, 1232, 1388
XceI	RCATGY	2 cut(s)	1774, 2061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1418
XmaJI	CCTAGG	1 cut(s)	2149
XmnI	GAANNNNTTC	2 cut(s)	1089, 1392
XspI	CTAG	6 cut(s)	509, 687, 906, 1877, 2142, 2150
Zsp2I	ATGCAT	1 cut(s)	1734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.