Rorug05G0150300

Lysine-specific histone demethylase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010932
Physical Location & Seq
Reverse (-)
13933121 .. 13934605
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0150300.1

Sequence Viewer

Length: 1380 bp
ATGTTTGCTTCCTTGATGCTTATTCAGTCCATGACTAACAATTTTTATACCTTGATCCCCCAACCCCTCCAGAGGTTTGTCATTTCCATTGTCATCGGCTTCTTCAAACGAAGTGTACCCCTTTTCATCCAAAGGCTTCTCCTTTCGGCCTACCATGAGTTCTCCAGACGATTCTTTCATGACCCCATCATGACCTTACTAGTTGAGGAATACCATGGCTTTTGTGACAATGAAATTTACCATGCTGTGGAGCACTACTTGCATAGCAAAATCAGCCCAAATACTCGACTCCTTAAAATAGCGCAAACCTGGCGAGACACTAGTTCCTCCTACCAATTTGTTGACAGGCAAGAGTTTGAAGACGTGTATGAGGGCATTGAGCTGAAATGGAAGTTCAGTTCCACTTCAAATCAGCAAAGCTTCCAGCTTATGTTTGACGTAAGGCACAAGGAAGCAGTGGGGTGTTCTTACATTCCTTATGTTTTGAAGAGGTTTAAGGCCATGAAAGAGGAAACAAAGATTGTCAGGCTGTGCACACTTGCGAGGAAAAATGGGCATAACATCAAGTGGCAATCAATAACATTCGGAAACTACTCTGCCACATTTGCTACTCTAGCCTTGGATCCCAAGCTGAAGACATCGATTTTAGAGGATTTGAACCGGTTTGTGAAGGGCAAAGAGTTCTACCAAGGTGTAGGAAGGGCTTGGAAGAGAGGCTATCTTCTATATGGTCCCCCCGGCACTGGTAAATCCTCCCTGATAGCTGCAATTGCTAATCATCTCAAGTTCAACATCTATGACTTGCAGCTCTCACATTTGAAATCCGATGTGGAACTGAGAAGTGTACTAGTTGCAACCACAAACCAATCCATACTTGTGATTGAGGATATAGATTGCGGTCTGAAGCTACAAGATAGAACCCTTGTTAAGACAACCAGCAGTTCGAAAGAGAAAGACCGAGCAGATGAGCCGGTGATTACACTTTCTGGCCTACTGAACTTCATAGATGGCCTATGGTCTGGTTCAGCAGAGCAAAGGATAATCATATTCACTACCAATCACAAGGACAAGCTTGACCCTGCATTGCTGCGTCCGGGACGAATGGATATGCATATCCACATGTCATATTGCACCTTTGGTGGGTTCGAAACCTTGGCGCGCAATTACTTGGGGATCAAAGAACACCAGCCTTTGTTTGATGAGATTGAAAGCCTGCTGCAAAATGCAGAGGTCACTCCTGCACAAGTGGCGCAAGAGCTGATGAAGAGTGAGGATGCTGAAGTTGCACTCCAAGGTCTGATCACAATGCTGAGGGAGAAGATCGAACATCAAAGGGTTGGAGATCAAATTAAAATGAGAGAAGATGAAGACAGTGTGTAG

Protein Analysis

459

Amino Acids

52.87

Weight (kDa)

7.26

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 40 - 133 1.9e-16 Domain associated at C-terminal with AAA
AAA PF00004 240 - 375 1.1e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 377 - 443 9.8e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13682
fragaria_vesca FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica MD03G1220300.v1.1
prunus_persica Prupe.4G188600_v2.0.a1
pyrus_communis pycom03g16960
rosa_chinensis RchiOBHm_Chr5g0035141
rosa_laevigata RLG00000033600 RLG00000033601
rosa_multiflora Rmu_sc0000879.1_g000007
rosa_roxburghii Rroxscaffold_1G00045270
rosa_rugosa Rorug05G0150300
rosa_samantha Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana Rw5G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 247
AccII CGCG 1 cut(s) 1159
AciI CCGC 1 cut(s) 897
AclWI GGATC 4 cut(s) 49, 617, 630, 1181
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 3 cut(s) 653, 923, 1299
AfaI GTAC 2 cut(s) 117, 846
AfiI CCNNNNNNNGG 4 cut(s) 72, 247, 743, 1140
AflIII ACRYGT 2 cut(s) 363, 1119
AgeI ACCGGT 1 cut(s) 660
AgsI TTSAA 8 cut(s) 106, 359, 408, 487, 658, 790, 820, 1208
AhlI ACTAGT 3 cut(s) 199, 320, 847
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 9 cut(s) 382, 420, 427, 631, 764, 808, 907, 1072, 1258
AluI AGCT 9 cut(s) 382, 420, 427, 631, 764, 808, 907, 1072, 1258
Alw21I GWGCWC 2 cut(s) 255, 536
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 4 cut(s) 49, 617, 630, 1181
AoxI GGCC 4 cut(s) 147, 498, 988, 1009
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 4 cut(s) 764, 805, 1087, 1216
ApoI RAATTY 1 cut(s) 234
AsiGI ACCGGT 1 cut(s) 660
AspLEI GCGC 4 cut(s) 304, 1159, 1161, 1252
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 2 cut(s) 738, 1095
AsuHPI GGTGA 1 cut(s) 985
AsuII TTCGAA 2 cut(s) 944, 1146
AvaII GGWCC 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 536
BamHI GGATCC 1 cut(s) 622
BbsI GAAGAC 3 cut(s) 366, 641, 1374
Bbv12I GWGCWC 2 cut(s) 255, 536
BbvCI CCTCAGC 1 cut(s) 1310
BbvI GCAGC 4 cut(s) 751, 817, 1074, 1203
BccI CCATC 2 cut(s) 194, 1001
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 1299
BcnI CCSGG 2 cut(s) 738, 1095
BcoDI GTCTC 1 cut(s) 309
BcuI ACTAGT 3 cut(s) 199, 320, 847
BfaI CTAG 4 cut(s) 200, 321, 614, 848
BisI GCNGC 4 cut(s) 765, 806, 1088, 1217
BlsI GCNGC 4 cut(s) 766, 807, 1089, 1218
Bme1390I CCNGG 3 cut(s) 310, 738, 1095
Bme18I GGWCC 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 2 cut(s) 624, 733
BmrFI CCNGG 3 cut(s) 310, 738, 1095
BmsI GCATC 2 cut(s) 6, 1264
BpiI GAAGAC 3 cut(s) 366, 641, 1374
BpmI CTGGAG 2 cut(s) 53, 148
Bpu10I CCTNAGC 1 cut(s) 1310
Bpu14I TTCGAA 2 cut(s) 944, 1146
BpuEI CTTGAG 1 cut(s) 767
BpuMI CCSGG 2 cut(s) 738, 1095
Bsa29I ATCGAT 1 cut(s) 641
BsaJI CCNNGG 6 cut(s) 214, 618, 688, 736, 1152, 1291
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 247, 743, 1140
Bse118I RCCGGY 2 cut(s) 660, 970
Bse1I ACTGG 1 cut(s) 748
Bse3DI GCAATG 1 cut(s) 1082
BseBI CCWGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 641
BseDI CCNNGG 6 cut(s) 214, 618, 688, 736, 1152, 1291
BseGI GGATG 2 cut(s) 126, 1279
BseLI CCNNNNNNNGG 4 cut(s) 72, 247, 743, 1140
BseMI GCAATG 1 cut(s) 1082
BseMII CTCAG 2 cut(s) 827, 1301
BseNI ACTGG 1 cut(s) 748
BsePI GCGCGC 1 cut(s) 1157
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 4 cut(s) 751, 817, 1074, 1203
BsgI GTGCAG 1 cut(s) 1224
Bsh1236I CGCG 1 cut(s) 1159
BshFI GGCC 4 cut(s) 149, 500, 990, 1011
BshTI ACCGGT 1 cut(s) 660
BshVI ATCGAT 1 cut(s) 641
BsiHKAI GWGCWC 2 cut(s) 255, 536
BsiSI CCGG 4 cut(s) 661, 738, 971, 1094
BslFI GGGAC 2 cut(s) 717, 1110
BslI CCNNNNNNNGG 4 cut(s) 72, 247, 743, 1140
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 717, 1110
BsnI GGCC 4 cut(s) 149, 500, 990, 1011
Bsp119I TTCGAA 2 cut(s) 944, 1146
Bsp1286I GDGCHC 2 cut(s) 255, 536
Bsp143I GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 897
BspANI GGCC 4 cut(s) 149, 500, 990, 1011
BspCNI CTCAG 2 cut(s) 828, 1302
BspDI ATCGAT 1 cut(s) 641
BspFNI CGCG 1 cut(s) 1159
BspHI TCATGA 2 cut(s) 178, 189
BspLI GGNNCC 2 cut(s) 624, 733
BspPI GGATC 4 cut(s) 49, 617, 630, 1181
BspT104I TTCGAA 2 cut(s) 944, 1146
BsrDI GCAATG 1 cut(s) 1082
BsrFI RCCGGY 2 cut(s) 660, 970
BsrI ACTGG 1 cut(s) 748
BssAI RCCGGY 2 cut(s) 660, 970
BssECI CCNNGG 6 cut(s) 214, 618, 688, 736, 1152, 1291
BssHII GCGCGC 1 cut(s) 1157
BssMI GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
BssT1I CCWWGG 5 cut(s) 214, 618, 688, 1152, 1291
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 1373
Bst6I CTCTTC 3 cut(s) 482, 704, 1259
BstAPI GCANNNNNTGC 1 cut(s) 259
BstBI TTCGAA 2 cut(s) 944, 1146
BstC8I GCNNGC 2 cut(s) 1159, 1214
BstDEI CTNAG 2 cut(s) 836, 1310
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 126, 1279
BstFNI CGCG 1 cut(s) 1159
BstHHI GCGC 4 cut(s) 304, 1159, 1161, 1252
BstKTI GATC 6 cut(s) 57, 625, 1176, 1302, 1323, 1345
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
BstMWI GCNNNNNNNGC 8 cut(s) 259, 273, 310, 605, 614, 770, 1247, 1283
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 1123
BstSCI CCNGG 3 cut(s) 308, 736, 1093
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 1 cut(s) 1159
BstV1I GCAGC 4 cut(s) 751, 817, 1074, 1203
BstV2I GAAGAC 3 cut(s) 366, 641, 1374
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 641
BsuRI GGCC 4 cut(s) 149, 500, 990, 1011
BsuTUI ATCGAT 1 cut(s) 641
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 126, 1279
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 462, 741, 1378
Cac8I GCNNGC 2 cut(s) 1159, 1214
CciI TCATGA 2 cut(s) 178, 189
CfoI GCGC 4 cut(s) 304, 1159, 1161, 1252
Cfr10I RCCGGY 2 cut(s) 660, 970
Cfr13I GGNCC 1 cut(s) 731
ClaI ATCGAT 1 cut(s) 641
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 2 cut(s) 116, 845
CspAI ACCGGT 1 cut(s) 660
CviAII CATG 8 cut(s) 31, 155, 179, 190, 215, 242, 502, 1120
CviQI GTAC 2 cut(s) 116, 845
DdeI CTNAG 2 cut(s) 836, 1310
DpnI GATC 6 cut(s) 56, 624, 1175, 1301, 1322, 1344
DpnII GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
Eam1104I CTCTTC 3 cut(s) 482, 704, 1259
EarI CTCTTC 3 cut(s) 482, 704, 1259
Eco130I CCWWGG 5 cut(s) 214, 618, 688, 1152, 1291
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 3 cut(s) 653, 923, 1299
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 5 cut(s) 214, 618, 688, 1152, 1291
EcoT22I ATGCAT 1 cut(s) 1113
ErhI CCWWGG 5 cut(s) 214, 618, 688, 1152, 1291
FaeI CATG 8 cut(s) 34, 158, 182, 193, 218, 245, 505, 1123
FaqI GGGAC 2 cut(s) 717, 1110
FatI CATG 8 cut(s) 30, 154, 178, 189, 214, 241, 501, 1119
FbaI TGATCA 1 cut(s) 1299
Fnu4HI GCNGC 4 cut(s) 765, 806, 1088, 1217
FokI GGATG 2 cut(s) 113, 1286
Fsp4HI GCNGC 4 cut(s) 765, 806, 1088, 1217
FspBI CTAG 4 cut(s) 200, 321, 614, 848
GlaI GCGC 4 cut(s) 303, 1158, 1160, 1251
GluI GCNGC 4 cut(s) 765, 806, 1088, 1217
GsuI CTGGAG 2 cut(s) 53, 148
HaeIII GGCC 4 cut(s) 149, 500, 990, 1011
HapII CCGG 4 cut(s) 661, 738, 971, 1094
HgaI GACGC 1 cut(s) 1079
HhaI GCGC 4 cut(s) 304, 1159, 1161, 1252
Hin1II CATG 8 cut(s) 34, 158, 182, 193, 218, 245, 505, 1123
Hin6I GCGC 4 cut(s) 302, 1157, 1159, 1250
HinP1I GCGC 4 cut(s) 302, 1157, 1159, 1250
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 418, 1070
HinfI GANTC 2 cut(s) 171, 288
HpaII CCGG 4 cut(s) 661, 738, 971, 1094
HphI GGTGA 1 cut(s) 985
Hpy166II GTNNAC 4 cut(s) 116, 343, 534, 845
Hpy188I TCNGA 4 cut(s) 587, 826, 903, 1299
Hpy188III TCNNGA 4 cut(s) 70, 165, 179, 190
Hpy8I GTNNAC 4 cut(s) 116, 343, 534, 845
HpyAV CCTTC 2 cut(s) 664, 693
HpyCH4III ACNGT 1 cut(s) 1373
HpyCH4IV ACGT 2 cut(s) 363, 438
HpyF10VI GCNNNNNNNGC 8 cut(s) 259, 273, 310, 605, 614, 770, 1247, 1283
HpyF3I CTNAG 2 cut(s) 836, 1310
HpySE526I ACGT 2 cut(s) 363, 438
Hsp92II CATG 8 cut(s) 34, 158, 182, 193, 218, 245, 505, 1123
HspAI GCGC 4 cut(s) 302, 1157, 1159, 1250
Ksp22I TGATCA 1 cut(s) 1299
Kzo9I GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 4 cut(s) 751, 817, 1074, 1203
LweI GCATC 2 cut(s) 6, 1264
MaeI CTAG 4 cut(s) 200, 321, 614, 848
MaeII ACGT 2 cut(s) 363, 438
MaeIII GTNAC 2 cut(s) 224, 1231
MalI GATC 6 cut(s) 56, 624, 1175, 1301, 1322, 1344
MboI GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 255, 536
MluCI AATT 6 cut(s) 40, 234, 335, 768, 1162, 1347
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 1318
Mph1103I ATGCAT 1 cut(s) 1113
MseI TTAA 4 cut(s) 294, 495, 927, 1350
MslI CAYNNNNRTG 1 cut(s) 875
MspI CCGG 4 cut(s) 661, 738, 971, 1094
MspR9I CCNGG 3 cut(s) 310, 738, 1095
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 1159
MwoI GCNNNNNNNGC 8 cut(s) 259, 273, 310, 605, 614, 770, 1247, 1283
NciI CCSGG 2 cut(s) 738, 1095
NcoI CCATGG 1 cut(s) 214
NdeII GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
NlaIII CATG 8 cut(s) 34, 158, 182, 193, 218, 245, 505, 1123
NlaIV GGNNCC 2 cut(s) 624, 733
NmuCI GTSAC 2 cut(s) 224, 1231
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 1 cut(s) 1123
NspV TTCGAA 2 cut(s) 944, 1146
PagI TCATGA 2 cut(s) 178, 189
PauI GCGCGC 1 cut(s) 1157
PciI ACATGT 1 cut(s) 1119
PfeI GAWTC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 1093
PinAI ACCGGT 1 cut(s) 660
PkrI GCNGC 4 cut(s) 766, 807, 1089, 1218
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PscI ACATGT 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 624, 733
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 622
PteI GCGCGC 1 cut(s) 1157
RsaI GTAC 2 cut(s) 117, 846
RsaNI GTAC 2 cut(s) 116, 845
RseI CAYNNNNRTG 1 cut(s) 875
SaqAI TTAA 4 cut(s) 294, 495, 927, 1350
SatI GCNGC 4 cut(s) 765, 806, 1088, 1217
Sau3AI GATC 6 cut(s) 54, 622, 1173, 1299, 1320, 1342
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 310, 738, 1095
SduI GDGCHC 2 cut(s) 255, 536
SfaNI GCATC 2 cut(s) 6, 1264
SfuI TTCGAA 2 cut(s) 944, 1146
SinI GGWCC 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SpeI ACTAGT 3 cut(s) 199, 320, 847
Sse9I AATT 6 cut(s) 40, 234, 335, 768, 1162, 1347
SsiI CCGC 1 cut(s) 897
SspMI CTAG 4 cut(s) 200, 321, 614, 848
StyD4I CCNGG 3 cut(s) 308, 736, 1093
StyI CCWWGG 5 cut(s) 214, 618, 688, 1152, 1291
TaaI ACNGT 1 cut(s) 1373
TaiI ACGT 2 cut(s) 366, 441
TaqI TCGA 5 cut(s) 286, 641, 944, 1146, 1323
TaqII GACCGA 1 cut(s) 972
TasI AATT 6 cut(s) 40, 234, 335, 768, 1162, 1347
TatI WGTACW 1 cut(s) 844
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 294, 495, 927, 1350
Tru9I TTAA 4 cut(s) 294, 495, 927, 1350
TscAI CASTG 3 cut(s) 462, 748, 1378
TseFI GTSAC 2 cut(s) 224, 1231
TseI GCWGC 4 cut(s) 764, 805, 1087, 1216
Tsp45I GTSAC 2 cut(s) 224, 1231
TspDTI ATGAA 7 cut(s) 115, 167, 246, 518, 991, 1277, 1380
TspRI CASTG 3 cut(s) 462, 748, 1378
Van91I CCANNNNNTGG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 1 cut(s) 234
XceI RCATGY 1 cut(s) 1123
XspI CTAG 4 cut(s) 200, 321, 614, 848
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.