Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010932

Physical Location & Seq

Genomic Coordinates Forward (+)

29538092 .. 29538601

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCATGGGGCCTTCTTGAGTGGCCTAAGAGAGGCATCGTGCATGTATCGCGCCACAAGGAGTAGCCAAAACAATGTCAAGAAAGTCTCACAAAAGAATGTTGGACCAAGCAATGATATGCTGGTAGATCTATTCAAGCATCCAGATCTAGCATTTGGGAAGTTTTCATTTGTATTTGATCCTACAACAGAAGATCCAAAATCTGTAGGGCTTATGAGAGTTGGTATTGGGAGCGATGAAGACAGTTTTAATCAGCAGTTTGTAAACAGCTTCCAGCATTCCTTAAACCTACCATTGCAGCTTTATGCTGTTGTATCTCGTGAGCAAGCATGTGGGTTAGAGCTGGTGACAGGAGGAGAAGAAAGTAGGTTATCTTACTTGGTAAAAGATCTTGGTTTGCAACTGATGGGACCTAGTGCCCTAGGATCTTCAGGTAACTCCTTGGCAATTAGTATTTTCAATGCACGAAGAGGCAGGGGAAAGAATCGTATGTTTGCCGTGCGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

170

Amino Acids

18.52

Weight (kDa)

9.26

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13682
fragaria_vesca	FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica	MD03G1220300.v1.1
prunus_persica	Prupe.4G188600_v2.0.a1
pyrus_communis	pycom03g16960
rosa_chinensis	RchiOBHm_Chr5g0035141
rosa_laevigata	RLG00000033600 RLG00000033601
rosa_multiflora	Rmu_sc0000879.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045270
rosa_rugosa	Rorug05G0150300
rosa_samantha	Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana	Rw5G022210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	3 cut(s)	173, 188, 433
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	136, 460
AluBI	AGCT	3 cut(s)	270, 301, 343
AluI	AGCT	3 cut(s)	270, 301, 343
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	173, 188, 433
AoxI	GGCC	2 cut(s)	9, 22
ApeKI	GCWGC	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	9, 104, 410
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	104, 410
AvrII	CCTAGG	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	149, 414, 422
BfmI	CTRYAG	1 cut(s)	204
BglII	AGATCT	3 cut(s)	127, 145, 388
BisI	GCNGC	2 cut(s)	299, 503
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	2 cut(s)	300, 504
Bme18I	GGWCC	2 cut(s)	104, 410
BmgT120I	GGNCC	3 cut(s)	9, 104, 410
BmiI	GGNNCC	2 cut(s)	10, 411
BmsI	GCATC	2 cut(s)	44, 148
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	421, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse3DI	GCAATG	2 cut(s)	118, 293
BseDI	CCNNGG	2 cut(s)	421, 441
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	118, 293
BseRI	GAGGAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	11, 24
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	11, 24
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	11, 24
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	10, 411
BspPI	GGATC	3 cut(s)	173, 188, 433
BsrDI	GCAATG	2 cut(s)	118, 293
BssECI	CCNNGG	2 cut(s)	421, 441
BssMI	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	421, 441
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	130, 148, 181, 196, 391, 428
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	46, 333
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	5 cut(s)	127, 145, 193, 388, 425
BstYI	RGATCY	5 cut(s)	127, 145, 193, 388, 425
BsuRI	GGCC	2 cut(s)	11, 24
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	9, 104, 410
CviAII	CATG	3 cut(s)	5, 43, 330
CviJI	RGCY	7 cut(s)	11, 24, 66, 211, 270, 301, 343
CviKI_1	RGCY	7 cut(s)	11, 24, 66, 211, 270, 301, 343
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	6 cut(s)	129, 147, 180, 195, 390, 427
DpnII	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	421, 441
Eco47I	GGWCC	2 cut(s)	104, 410
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	9, 410
EcoT14I	CCWWGG	2 cut(s)	421, 441
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	421, 441
FaeI	CATG	3 cut(s)	8, 46, 333
FaiI	YATR	7 cut(s)	6, 44, 119, 215, 306, 331, 491
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	4, 42, 329
Fnu4HI	GCNGC	2 cut(s)	299, 503
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	299, 503
FspBI	CTAG	3 cut(s)	149, 414, 422
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	299, 503
HaeIII	GGCC	2 cut(s)	11, 24
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	8, 46, 333
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	484
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	4 cut(s)	16, 79, 143, 320
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	5 cut(s)	4, 42, 298, 400, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	8, 46, 333
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	7 cut(s)	107, 156, 287, 329, 336, 417, 460
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	44, 148
MaeI	CTAG	3 cut(s)	149, 414, 422
MaeIII	GTNAC	2 cut(s)	346, 434
MalI	GATC	6 cut(s)	129, 147, 180, 195, 390, 427
MboI	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
MboII	GAAGA	5 cut(s)	203, 251, 371, 420, 480
MflI	RGATCY	5 cut(s)	127, 145, 193, 388, 425
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	25, 347, 464
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	249, 284
Mva1269I	GAATGC	1 cut(s)	277
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
NlaIII	CATG	3 cut(s)	8, 46, 333
NlaIV	GGNNCC	2 cut(s)	10, 411
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	46, 333
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	300, 504
PpuMI	RGGWCCY	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	10, 411
PspPI	GGNCC	3 cut(s)	9, 104, 410
PspPPI	RGGWCCY	1 cut(s)	410
PsuI	RGATCY	5 cut(s)	127, 145, 193, 388, 425
SaqAI	TTAA	2 cut(s)	249, 284
SatI	GCNGC	2 cut(s)	299, 503
Sau3AI	GATC	6 cut(s)	127, 145, 178, 193, 388, 425
Sau96I	GGNCC	3 cut(s)	9, 104, 410
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	7 cut(s)	272, 291, 303, 345, 371, 415, 436
SfaNI	GCATC	2 cut(s)	44, 148
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	104, 410
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	3 cut(s)	149, 414, 422
StyI	CCWWGG	2 cut(s)	421, 441
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	249, 284
Tru9I	TTAA	2 cut(s)	249, 284
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	156, 252
VpaK11BI	GGWCC	2 cut(s)	104, 410
XagI	CCTNNNNNAGG	1 cut(s)	29
XceI	RCATGY	2 cut(s)	46, 333
XmaJI	CCTAGG	1 cut(s)	421
XspI	CTAG	3 cut(s)	149, 414, 422
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.