MD03G1220300.v1.1

Lysine-specific histone demethylase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0010932
Physical Location & Seq
Reverse (-)
30449337 .. 30452592
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1220300.v1.1.491

Sequence Viewer

Length: 2247 bp
ATGGAGACACCGGGTTCAGATGGTTCTGTTTCTAAGCGGTCTCTGAGGAAGAAAGCAAGTTTGCGCAATTATGATGAGAATTTGATGGATGATATAATAGAGAAGCATTTAGGTGGTACTTTTAAGAAAAGGAAGGGAACAAAGGTGGATTTGGAGAAAGAGACTGAAACAGAGGCCATGATAGCACTGTCCCTCGGGTTCCCCATTGATGAGCTGCTTGAGGAGGAAAAACAAGCTGGGGTGGTCACCGAGTTGGGTGGGAAGCAGCAGAATGATTACATTGTTGTGAGAAATCATATTTTAGTAAGATGGCGGAGTAATGTGCGAGTGTGGCTTTCAAAAGGGCAGATTAAAGAAACTGTGAGTGGTGATTATGAGCATTTGATATCTTCAGCTTATGATTTTCTTTTGTATAATGGATACATCAATTTTGGGGTTGCACCAGCATTTATGGCTAATATGCCAGAGGAGGTAACTGAAGGGTCTGTCATCATTGTTGGTGCGGGACTTGCTGGACTAGCGGCTGCAAGGCAGCTTATGCAATTGGGTTTCAAGGTGGCTGTTTTAGAAGGTAGGAATCGACCAGGTGGAAGAGTCTACACCCAAAAGATGGGGAAGGATGGAAAGTTTTCTGCTGTGGATCTTGGCGGCAGTGTCATTACTGGCATCCATGCTAACCCACTTGGAGTTCTGGCGAGGCAACTTTCTATTCCGCTTCATAAGGTCAGAGATAAGTGTCCTTTGTACAAACCTGATGGGACACCTGTTAATAAGGACATTGACTCTAACATTGAAATCATCTTTAATAAGTTGCTTGACAAAGTCATGGAACTCCGACAGACAATGGGTGGGTTTGGAAATGATATATCTCTGGGTTCAGTTTTGGAGAAACTGAGGCAGTTGTATTCTGTTGCTAGAAGCACTGACGAGAAGCAACTTCTTGATTGGCATCTTGCAAATTTGGAATATGCAAATGCTGGATGTCTATCAAATCTCTCAGCTGCCTACTGGGATCAGGATGATCCTTATGAAATGGGTGGGGACCACTGTTTTCTTGCTGGAGGTAATGGGAGATTGATCAGAGCACTGTGTGAAAGAGTTCCCATATTCTATGGAAAGACTGTCAATACTATTAGGTATGGAGATGAAGGGGTTGAAGTTATTGCAGGGGACCAAGTGTTTCGAGGGGACATGGTCCTATGCACTGTTCCTCTTGGAGTTCTGAAAAAGGGTTCCATCAGATTTGAACCCGAGTTGCCCCAAAGAAAGCTCGCAGCAATTGAAAGGTTGGGATTTGGTCTGCTGAACAAAGTAGCTATGGTTTTTCCTCATGTTTTCTGGGGTGAAGAACTAGATACTTTTGGATGTCTCAATGAACATAGCCATCAACGTGGAGAGTTCTTTTTGTTCTATGGATACCATACTGTATCTGGAGGTCCAGTTCTTATTGCACTGGTGGCGGGAGAAGCTGCAGAGACATTTGAGTGCACAGAGCCATCAATATTGCTCCATCGAGTTTTAAGCGTCCTCAGAGGTATATATACTCCTAAGGGCATTGATGTACCTAATCCAATTCAAACCATTTGTACAAGGTGGGGTGGTGATCCCCTTTCCTATGGTTCATATTCTCATGTTAGAGTACAGTCATCTGGCAGTGACTATGATTTGCTCGCAGAAAGTGTGGGAAACCGGCTGTTCTTTGCAGGTGAGGCCACAACCAGGCAACATCCAGCTACCATGCATGGGGCCTTTCTGAGTGGCCTAAGAGAGGCTTCGTGCATATATCGTGCCACAAGACGTAGTCAAAACTATTTGAGGAAAGTCATACAAAAGAATGTTGGATCAAGCACTGATATGCTGGAAGATCTATTTGAGAAGCCCGATTTGGAATTTGGGAACTTTTCATGTGTATTTGATCCTTCAATAGAAGACCCAAAATCAATAGGATTTATGAGAGTTGGTGTTGGGAGTAGTGAAAACAGTTATAAACAAGAGCTAACAAGCAGCTCCCAAAATGCCTTAACCATACCATTGCAGCTTTACACATTTATATCTCGTGAGCAAGCATGTGGGTTAGAACTGGTGACAGGAGGAGATGAAAGTAGGCTATCGTACTTGGTGAAAGTTTTCGGCTTGAAGCTGATGGGACCTAGTGCCATAGGAACTGTAGGTAACTCCTTGGCAGTTAGCATTGGTAATGCTCGAAGAGGAAGGGGAAGGAATCGCATGTCCGCCGGGCGGCAGTAG

Protein Analysis

749

Amino Acids

82.3

Weight (kDa)

6.6

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 70 - 144 2.4e-13 SWIRM domain
Thi4 PF01946 157 - 199 6.4e-06 Thi4 family
Pyr_redox_2 PF07992 162 - 203 4.5e-06 Pyridine nucleotide-disulphide oxidoreductase
DAO PF01266 163 - 197 3.2e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 165 - 226 5.6e-13 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 170 - 594 3.9e-79 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13682
fragaria_vesca FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840 FvH4_3g20840
malus_domestica MD03G1220300.v1.1
prunus_persica Prupe.4G188600_v2.0.a1
pyrus_communis pycom03g16960
rosa_chinensis RchiOBHm_Chr5g0035141
rosa_laevigata RLG00000033600 RLG00000033601
rosa_multiflora Rmu_sc0000879.1_g000007
rosa_roxburghii Rroxscaffold_1G00045270
rosa_rugosa Rorug05G0150300
rosa_samantha Rh5AG243100 Rh5BG242700 Rh5CG274300 Rh5DG251500
rosa_wichuraiana Rw5G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1986
AarI CACCTGC 1 cut(s) 1694
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 1694
AccB7I CCANNNNNTGG 1 cut(s) 610
AccI GTMKAC 1 cut(s) 597
AciI CCGC 9 cut(s) 37, 313, 503, 521, 648, 713, 1460, 2232, 2239
AclWI GGATC 6 cut(s) 648, 1016, 1020, 1598, 1849, 1910
AcsI RAATTY 3 cut(s) 79, 958, 1889
AcuI CTGAAG 2 cut(s) 375, 498
AdeI CACNNNGTG 1 cut(s) 1091
AfaI GTAC 6 cut(s) 118, 746, 1563, 1588, 1641, 2114
AfiI CCNNNNNNNGG 5 cut(s) 610, 1719, 1743, 1768, 2238
AgsI TTSAA 9 cut(s) 339, 553, 794, 1157, 1247, 1283, 1577, 1923, 2137
AjnI CCWGG 2 cut(s) 583, 1718
AjuI GAANNNNNNNTTGG 2 cut(s) 1868, 1900
AloI GAACNNNNNNTCC 2 cut(s) 1425, 1457
Alw21I GWGCWC 2 cut(s) 1087, 1490
Alw26I GTCTC 4 cut(s) 45, 155, 1373, 1469
Alw44I GTGCAC 1 cut(s) 1486
AlwI GGATC 6 cut(s) 648, 1016, 1020, 1598, 1849, 1910
Ama87I CYCGRG 2 cut(s) 194, 1250
AoxI GGCC 4 cut(s) 174, 1710, 1746, 1759
ApaLI GTGCAC 1 cut(s) 1486
ApeKI GCWGC 9 cut(s) 214, 265, 524, 532, 1001, 1274, 1469, 2004, 2035
ApoI RAATTY 3 cut(s) 79, 958, 1889
Asp700I GAANNNNTTC 3 cut(s) 628, 1098, 2126
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 6 cut(s) 1042, 1171, 1195, 1436, 1746, 2147
AsuC2I CCSGG 2 cut(s) 12, 2236
AsuHPI GGTGA 7 cut(s) 238, 380, 1355, 1613, 1718, 2095, 2131
AvaI CYCGRG 2 cut(s) 194, 1250
AvaII GGWCC 5 cut(s) 1042, 1171, 1195, 1436, 2147
AxyI CCTNAGG 1 cut(s) 1548
BaeGI GKGCMC 1 cut(s) 1490
BauI CACGAG 1 cut(s) 2055
BbsI GAAGAC 1 cut(s) 1935
Bbv12I GWGCWC 2 cut(s) 1087, 1490
BbvI GCAGC 9 cut(s) 201, 277, 511, 544, 988, 1286, 1456, 2016, 2047
BciT130I CCWGG 2 cut(s) 585, 1720
BciVI GTATCC 2 cut(s) 413, 1409
BclI TGATCA 1 cut(s) 1077
BcnI CCSGG 2 cut(s) 12, 2236
BcoDI GTCTC 4 cut(s) 45, 155, 1373, 1469
BfaI CTAG 4 cut(s) 518, 915, 1352, 2151
BfmI CTRYAG 2 cut(s) 1470, 2166
BfuAI ACCTGC 1 cut(s) 1694
BfuI GTATCC 2 cut(s) 413, 1409
BglII AGATCT 1 cut(s) 1864
Bme1390I CCNGG 4 cut(s) 12, 585, 1720, 2236
Bme18I GGWCC 5 cut(s) 1042, 1171, 1195, 1436, 2147
BmeT110I CYCGRG 2 cut(s) 194, 1250
BmgT120I GGNCC 6 cut(s) 1042, 1171, 1195, 1436, 1746, 2147
BmiI GGNNCC 6 cut(s) 200, 1043, 1172, 1234, 1747, 2148
BmrFI CCNGG 4 cut(s) 12, 585, 1720, 2236
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 2 cut(s) 675, 958
BmuI ACTGGG 1 cut(s) 1018
BpiI GAAGAC 1 cut(s) 1935
BpmI CTGGAG 2 cut(s) 1080, 1452
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 12, 2236
BsaBI GATNNNNATC 2 cut(s) 948, 985
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 193, 2178
BsaXI ACNNNNNCTCC 2 cut(s) 1425, 1455
Bsc4I CCNNNNNNNGG 5 cut(s) 610, 1719, 1743, 1768, 2238
Bse118I RCCGGY 1 cut(s) 1689
Bse1I ACTGG 5 cut(s) 667, 1013, 1439, 1458, 2085
Bse21I CCTNAGG 1 cut(s) 1548
Bse3DI GCAATG 1 cut(s) 2030
Bse8I GATNNNNATC 2 cut(s) 948, 985
BseBI CCWGG 2 cut(s) 585, 1720
BseDI CCNNGG 2 cut(s) 193, 2178
BseGI GGATG 7 cut(s) 94, 625, 666, 986, 1024, 1370, 1726
BseJI GATNNNNATC 2 cut(s) 948, 985
BseLI CCNNNNNNNGG 5 cut(s) 610, 1719, 1743, 1768, 2238
BseMI GCAATG 1 cut(s) 2030
BseMII CTCAG 5 cut(s) 35, 884, 1011, 1543, 1745
BseNI ACTGG 5 cut(s) 667, 1013, 1439, 1458, 2085
BseRI GAGGAG 3 cut(s) 236, 482, 2106
BseSI GKGCMC 1 cut(s) 1490
BseXI GCAGC 9 cut(s) 201, 277, 511, 544, 988, 1286, 1456, 2016, 2047
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 4 cut(s) 176, 1712, 1748, 1761
BsiHKAI GWGCWC 2 cut(s) 1087, 1490
BsiHKCI CYCGRG 2 cut(s) 194, 1250
BsiSI CCGG 3 cut(s) 11, 1690, 2235
BslFI GGGAC 7 cut(s) 175, 519, 772, 1055, 1184, 1202, 2160
BslI CCNNNNNNNGG 5 cut(s) 610, 1719, 1743, 1768, 2238
BsmAI GTCTC 4 cut(s) 45, 155, 1373, 1469
BsmFI GGGAC 7 cut(s) 175, 519, 772, 1055, 1184, 1202, 2160
BsnI GGCC 4 cut(s) 176, 1712, 1748, 1761
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 2 cut(s) 194, 1250
Bsp1286I GDGCHC 2 cut(s) 1087, 1490
Bsp1407I TGTACA 2 cut(s) 744, 1586
Bsp143I GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
BspACI CCGC 9 cut(s) 37, 313, 503, 521, 648, 713, 1460, 2232, 2239
BspANI GGCC 4 cut(s) 176, 1712, 1748, 1761
BspCNI CTCAG 5 cut(s) 36, 885, 1010, 1542, 1746
BspLI GGNNCC 6 cut(s) 200, 1043, 1172, 1234, 1747, 2148
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 1 cut(s) 1694
BspPI GGATC 6 cut(s) 648, 1016, 1020, 1598, 1849, 1910
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 2030
BsrFI RCCGGY 1 cut(s) 1689
BsrGI TGTACA 2 cut(s) 744, 1586
BsrI ACTGG 5 cut(s) 667, 1013, 1439, 1458, 2085
BssAI RCCGGY 1 cut(s) 1689
BssECI CCNNGG 2 cut(s) 193, 2178
BssMI GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
BssSI CACGAG 1 cut(s) 2055
BssT1I CCWWGG 1 cut(s) 2178
Bst2BI CACGAG 1 cut(s) 2055
Bst2UI CCWGG 2 cut(s) 585, 1720
Bst6I CTCTTC 2 cut(s) 586, 2200
BstAPI GCANNNNNTGC 1 cut(s) 538
BstAUI TGTACA 2 cut(s) 744, 1586
BstC8I GCNNGC 3 cut(s) 1272, 1671, 2064
BstDEI CTNAG 8 cut(s) 33, 44, 893, 997, 1529, 1548, 1754, 1763
BstEII GGTNACC 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 1766
BstF5I GGATG 7 cut(s) 94, 625, 666, 986, 1024, 1370, 1726
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 8 cut(s) 643, 1015, 1024, 1080, 1606, 1844, 1867, 1918
BstMAI GTCTC 4 cut(s) 45, 155, 1373, 1469
BstMBI GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
BstMWI GCNNNNNNNGC 9 cut(s) 182, 331, 452, 509, 518, 538, 1457, 1466, 1709
BstNI CCWGG 2 cut(s) 585, 1720
BstNSI RCATGY 2 cut(s) 2070, 2230
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 10, 583, 1718, 2234
BstSFI CTRYAG 2 cut(s) 1470, 2166
BstSLI GKGCMC 1 cut(s) 1490
BstV1I GCAGC 9 cut(s) 201, 277, 511, 544, 988, 1286, 1456, 2016, 2047
BstV2I GAAGAC 1 cut(s) 1935
BstX2I RGATCY 2 cut(s) 640, 1864
BstXI CCANNNNNNTGG 1 cut(s) 1391
BstYI RGATCY 2 cut(s) 640, 1864
Bsu36I CCTNAGG 1 cut(s) 1548
BsuI GTATCC 2 cut(s) 413, 1409
BsuRI GGCC 4 cut(s) 176, 1712, 1748, 1761
BtsCI GGATG 7 cut(s) 94, 625, 666, 986, 1024, 1370, 1726
BtsI GCAGTG 2 cut(s) 658, 1660
BtsIMutI CAGTG 9 cut(s) 185, 658, 921, 1045, 1085, 1203, 1451, 1660, 1848
BveI ACCTGC 1 cut(s) 1694
Cac8I GCNNGC 3 cut(s) 1272, 1671, 2064
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 1689
Cfr13I GGNCC 6 cut(s) 1042, 1171, 1195, 1436, 1746, 2147
CseI GACGC 1 cut(s) 1513
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 6 cut(s) 117, 745, 1562, 1587, 1640, 2113
CviQI GTAC 6 cut(s) 117, 745, 1562, 1587, 1640, 2113
DdeI CTNAG 8 cut(s) 33, 44, 893, 997, 1529, 1548, 1754, 1763
DpnI GATC 8 cut(s) 642, 1014, 1023, 1079, 1605, 1843, 1866, 1917
DpnII GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
DraIII CACNNNGTG 1 cut(s) 1091
Eam1104I CTCTTC 2 cut(s) 586, 2200
EarI CTCTTC 2 cut(s) 586, 2200
EciI GGCGGA 2 cut(s) 328, 2221
Eco130I CCWWGG 1 cut(s) 2178
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 5 cut(s) 1042, 1171, 1195, 1436, 2147
Eco57I CTGAAG 2 cut(s) 375, 498
Eco81I CCTNAGG 1 cut(s) 1548
Eco88I CYCGRG 2 cut(s) 194, 1250
Eco91I GGTNACC 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 1766
EcoO109I RGGNCCY 2 cut(s) 1746, 2147
EcoO65I GGTNACC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 583, 1718
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 2178
EcoT22I ATGCAT 1 cut(s) 1743
ErhI CCWWGG 1 cut(s) 2178
FalI AAGNNNNNCTT 2 cut(s) 1756, 1788
FaqI GGGAC 7 cut(s) 175, 519, 772, 1055, 1184, 1202, 2160
FauI CCCGC 2 cut(s) 496, 1453
FbaI TGATCA 1 cut(s) 1077
FblI GTMKAC 1 cut(s) 597
FokI GGATG 7 cut(s) 101, 632, 653, 993, 1031, 1377, 1713
FspBI CTAG 4 cut(s) 518, 915, 1352, 2151
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 1 cut(s) 65
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 1080, 1452
HaeIII GGCC 4 cut(s) 176, 1712, 1748, 1761
HapII CCGG 3 cut(s) 11, 1690, 2235
HgaI GACGC 1 cut(s) 1513
HhaI GCGC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 4 cut(s) 577, 594, 782, 2221
HpaII CCGG 3 cut(s) 11, 1690, 2235
HphI GGTGA 7 cut(s) 238, 380, 1355, 1613, 1718, 2095, 2131
Hpy166II GTNNAC 2 cut(s) 598, 1488
Hpy188I TCNGA 9 cut(s) 19, 45, 728, 836, 1082, 1224, 1241, 1532, 1755
Hpy188III TCNNGA 4 cut(s) 941, 1016, 1431, 2057
Hpy8I GTNNAC 2 cut(s) 598, 1488
HpyAV CCTTC 8 cut(s) 127, 473, 563, 610, 1142, 1929, 2205, 2211
HpyCH4IV ACGT 2 cut(s) 1390, 1798
HpyF10VI GCNNNNNNNGC 9 cut(s) 182, 331, 452, 509, 518, 538, 1457, 1466, 1709
HpyF3I CTNAG 8 cut(s) 33, 44, 893, 997, 1529, 1548, 1754, 1763
HpySE526I ACGT 2 cut(s) 1390, 1798
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
LmnI GCTCC 2 cut(s) 1512, 2012
Lsp1109I GCAGC 9 cut(s) 201, 277, 511, 544, 988, 1286, 1456, 2016, 2047
LweI GCATC 2 cut(s) 675, 958
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 4 cut(s) 518, 915, 1352, 2151
MaeII ACGT 2 cut(s) 1390, 1798
MaeIII GTNAC 5 cut(s) 244, 472, 1655, 2083, 2171
MalI GATC 8 cut(s) 642, 1014, 1023, 1079, 1605, 1843, 1866, 1917
MboI GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
MboII GAAGA 7 cut(s) 61, 381, 603, 1358, 1874, 1940, 2217
MfeI CAATTG 2 cut(s) 542, 1278
MflI RGATCY 2 cut(s) 640, 1864
MhlI GDGCHC 2 cut(s) 1087, 1490
MluCI AATT 8 cut(s) 67, 79, 427, 542, 958, 1278, 1572, 1889
MlyI GAGTC 2 cut(s) 603, 776
MmeI TCCRAC 2 cut(s) 859, 1819
Mph1103I ATGCAT 1 cut(s) 1743
MroXI GAANNNNTTC 3 cut(s) 628, 1098, 2126
MseI TTAA 6 cut(s) 123, 351, 768, 804, 1520, 2021
MslI CAYNNNNRTG 5 cut(s) 111, 284, 1389, 1483, 1853
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 3 cut(s) 11, 1690, 2235
MspR9I CCNGG 4 cut(s) 12, 585, 1720, 2236
MunI CAATTG 2 cut(s) 542, 1278
MvaI CCWGG 2 cut(s) 585, 1720
MwoI GCNNNNNNNGC 9 cut(s) 182, 331, 452, 509, 518, 538, 1457, 1466, 1709
NciI CCSGG 2 cut(s) 12, 2236
NdeII GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
NlaIV GGNNCC 6 cut(s) 200, 1043, 1172, 1234, 1747, 2148
NmuCI GTSAC 3 cut(s) 244, 1655, 2083
NsbI TGCGCA 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 1743
NspI RCATGY 2 cut(s) 2070, 2230
PaqCI CACCTGC 1 cut(s) 1694
PdmI GAANNNNTTC 3 cut(s) 628, 1098, 2126
PfeI GAWTC 2 cut(s) 577, 2221
PflFI GACNNNGTC 3 cut(s) 821, 1193, 1800
PflMI CCANNNNNTGG 1 cut(s) 610
PleI GAGTC 2 cut(s) 602, 776
PpsI GAGTC 2 cut(s) 602, 776
PpuMI RGGWCCY 1 cut(s) 2147
PsiI TTATAA 1 cut(s) 1986
Psp5II RGGWCCY 1 cut(s) 2147
Psp6I CCWGG 2 cut(s) 583, 1718
PspEI GGTNACC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 2 cut(s) 583, 1718
PspN4I GGNNCC 6 cut(s) 200, 1043, 1172, 1234, 1747, 2148
PspPI GGNCC 6 cut(s) 1042, 1171, 1195, 1436, 1746, 2147
PspPPI RGGWCCY 1 cut(s) 2147
PstI CTGCAG 1 cut(s) 1474
PsuI RGATCY 2 cut(s) 640, 1864
PsyI GACNNNGTC 3 cut(s) 821, 1193, 1800
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 6 cut(s) 118, 746, 1563, 1588, 1641, 2114
RsaNI GTAC 6 cut(s) 117, 745, 1562, 1587, 1640, 2113
RseI CAYNNNNRTG 5 cut(s) 111, 284, 1389, 1483, 1853
SaqAI TTAA 6 cut(s) 123, 351, 768, 804, 1520, 2021
Sau3AI GATC 8 cut(s) 640, 1012, 1021, 1077, 1603, 1841, 1864, 1915
Sau96I GGNCC 6 cut(s) 1042, 1171, 1195, 1436, 1746, 2147
SchI GAGTC 2 cut(s) 603, 776
ScrFI CCNGG 4 cut(s) 12, 585, 1720, 2236
SduI GDGCHC 2 cut(s) 1087, 1490
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 2 cut(s) 675, 958
SfcI CTRYAG 2 cut(s) 1470, 2166
SinI GGWCC 5 cut(s) 1042, 1171, 1195, 1436, 2147
SmiMI CAYNNNNRTG 5 cut(s) 111, 284, 1389, 1483, 1853
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 8 cut(s) 67, 79, 427, 542, 958, 1278, 1572, 1889
SsiI CCGC 9 cut(s) 37, 313, 503, 521, 648, 713, 1460, 2232, 2239
SspI AATATT 1 cut(s) 1503
SspMI CTAG 4 cut(s) 518, 915, 1352, 2151
StyD4I CCNGG 4 cut(s) 10, 583, 1718, 2234
StyI CCWWGG 1 cut(s) 2178
TaiI ACGT 2 cut(s) 1393, 1801
TaqI TCGA 4 cut(s) 580, 1183, 1513, 2203
TasI AATT 8 cut(s) 67, 79, 427, 542, 958, 1278, 1572, 1889
TatI WGTACW 3 cut(s) 744, 1586, 1639
TauI GCSGC 3 cut(s) 524, 651, 2242
TfiI GAWTC 2 cut(s) 577, 2221
Tru1I TTAA 6 cut(s) 123, 351, 768, 804, 1520, 2021
Tru9I TTAA 6 cut(s) 123, 351, 768, 804, 1520, 2021
TscAI CASTG 9 cut(s) 192, 658, 928, 1052, 1092, 1210, 1458, 1660, 1855
TseFI GTSAC 3 cut(s) 244, 1655, 2083
TseI GCWGC 9 cut(s) 214, 265, 524, 532, 1001, 1274, 1469, 2004, 2035
Tsp45I GTSAC 3 cut(s) 244, 1655, 2083
TspDTI ATGAA 7 cut(s) 707, 1044, 1161, 1389, 1611, 1893, 2112
TspRI CASTG 9 cut(s) 192, 658, 928, 1052, 1092, 1210, 1458, 1660, 1855
Tth111I GACNNNGTC 3 cut(s) 821, 1193, 1800
Van91I CCANNNNNTGG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 1486
VpaK11BI GGWCC 5 cut(s) 1042, 1171, 1195, 1436, 2147
XagI CCTNNNNNAGG 1 cut(s) 1766
XapI RAATTY 3 cut(s) 79, 958, 1889
XceI RCATGY 2 cut(s) 2070, 2230
XcmI CCANNNNNNNNNTGG 1 cut(s) 1427
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 3 cut(s) 628, 1098, 2126
XspI CTAG 4 cut(s) 518, 915, 1352, 2151
Zsp2I ATGCAT 1 cut(s) 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.