Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010885

Physical Location & Seq

Genomic Coordinates Forward (+)

13919688 .. 13923147

Gene Structure 3460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACAGCTATTATTCAAATCTCCATCAATTCCTTAGCTTTCAGATTGAGCAGTTTGCAGAATGACACATGCAACAAACCCATCAAGTATTGTGTTCTACCCAGAACAAAGATTGCTTCTTTGAAGCTCATCAGGTTCAAGTTGAGAGCTTCTTGGCGGAGTGGGCCTATCAGTGGAGATGGGATTTTGTTGAAAGATGAGGGGTGGAATAGGAAGAAGAAAAGAGAGGTTGTGGTGAGGTTTAACCAGGGGTTTGGGTTCAATGGTGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGCGGGAAAGATGATGGAACCACTGCTAGAGTGTTGGGTAATATAGCTGTGGCTATTGGGTTGACTTATCTTTCATTTACTGGGCAGCTGGGTTGGCTTTTGGATGCTATTGTTTCCATTTGGCTCTTAGCATTTCTTGTGCCAATTGTTGGTTTGGGTGCTTTTCTGTGGTGGGCAGGACGGGATATTGTTCAAGACAGTTGCCCAAACTGCGGAAATGATTTTCAGATTTTCAAATCTACTTTAAATGATGATATGCAGCAGTGCCCATACTGTAGTCAACCTTTCTCTGTGGTGGACAACAAGTTTGTAATGGACCCAGTGAATTTTTCTAATCGATCTGCAACATTTGGCCAGGCATTTAATGACTACACACGTTCAAAAACAGGGAAGAAGGATTCTTCTACGGCAGTTGTTGATGTTGAAGCAGAAGTAACAGATGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.84

Weight (kDa)

8.89

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27390
fragaria_vesca	FvH4_3g20860 FvH4_3g20860
malus_domestica	MD03G1219800.v1.1 MD11G1238100.v1.1
prunus_persica	Prupe.4G189000_v2.0.a1
pyrus_communis	pycom03g16920 pycom11g20940
rosa_chinensis	RchiOBHm_Chr5g0035191 RchiOBHm_Chr5g0035211
rosa_laevigata	RLG00000033605
rosa_multiflora	Rmu_sc0008176.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045180 Rroxscaffold_1G00045220 Rroxscaffold_1G00045230
rosa_rugosa	Rorug05G0150500
rosa_samantha	Rh5AG243500 Rh5CG274600 Rh5DG252000
rosa_wichuraiana	Rw5G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	3 cut(s)	157, 300, 510
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	622
AfiI	CCNNNNNNNGG	3 cut(s)	173, 446, 509
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	9 cut(s)	17, 124, 139, 193, 262, 491, 532, 678, 722
AjnI	CCWGG	2 cut(s)	246, 651
AluBI	AGCT	6 cut(s)	8, 38, 127, 149, 344, 385
AluI	AGCT	6 cut(s)	8, 38, 127, 149, 344, 385
AoxI	GGCC	2 cut(s)	164, 649
ApeKI	GCWGC	2 cut(s)	382, 556
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AspS9I	GGNCC	2 cut(s)	164, 613
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	394, 568
BccI	CCATC	4 cut(s)	32, 89, 173, 305
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	2 cut(s)	248, 653
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	571
BisI	GCNGC	2 cut(s)	383, 557
BlsI	GCNGC	2 cut(s)	384, 558
Bme1390I	CCNGG	2 cut(s)	248, 653
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	164, 613
BmiI	GGNNCC	2 cut(s)	316, 615
BmrFI	CCNGG	2 cut(s)	248, 653
BmrI	ACTGGG	2 cut(s)	387, 611
BmsI	GCATC	2 cut(s)	391, 727
BmuI	ACTGGG	2 cut(s)	387, 611
Bpu10I	CCTNAGC	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 446, 509
Bse1I	ACTGG	2 cut(s)	382, 617
BseBI	CCWGG	2 cut(s)	248, 653
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	173, 446, 509
BseNI	ACTGG	2 cut(s)	382, 617
BseRI	GAGGAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	394, 568
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	2 cut(s)	166, 651
BshVI	ATCGAT	1 cut(s)	634
BslI	CCNNNNNNNGG	3 cut(s)	173, 446, 509
BsnI	GGCC	2 cut(s)	166, 651
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	1 cut(s)	635
BspACI	CCGC	3 cut(s)	157, 300, 510
BspANI	GGCC	2 cut(s)	166, 651
BspDI	ATCGAT	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	316, 615
BsrI	ACTGG	2 cut(s)	382, 617
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	635
Bst2UI	CCWGG	2 cut(s)	248, 653
Bst4CI	ACNGT	2 cut(s)	497, 572
BstDEI	CTNAG	2 cut(s)	34, 424
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	638
BstMBI	GATC	1 cut(s)	635
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 391, 507
BstNI	CCWGG	2 cut(s)	248, 653
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	246, 651
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	394, 568
BstXI	CCANNNNNNTGG	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	166, 651
BsuTUI	ATCGAT	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	2 cut(s)	318, 566
BtsIMutI	CAGTG	4 cut(s)	178, 318, 566, 624
Cfr13I	GGNCC	2 cut(s)	164, 613
ClaI	ATCGAT	1 cut(s)	634
CviAII	CATG	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	34, 424
DpnI	GATC	1 cut(s)	637
DpnII	GATC	1 cut(s)	635
DraI	TTTAAA	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	649
EciI	GGCGGA	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	246, 651
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	70, 341, 554, 568
FatI	CATG	1 cut(s)	68
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	383, 557
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	383, 557
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	383, 557
GsaI	CCCAGC	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	166, 651
Hin1II	CATG	1 cut(s)	72
HincII	GTYRAC	2 cut(s)	360, 578
HindII	GTYRAC	2 cut(s)	360, 578
HinfI	GANTC	1 cut(s)	695
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	360, 578, 595
Hpy188I	TCNGA	2 cut(s)	44, 525
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	3 cut(s)	360, 578, 595
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	2 cut(s)	497, 572
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	5 cut(s)	58, 72, 556, 641, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 391, 507
HpyF3I	CTNAG	2 cut(s)	34, 424
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	635
Lsp1109I	GCAGC	2 cut(s)	394, 568
LweI	GCATC	2 cut(s)	391, 727
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	1 cut(s)	637
MboI	GATC	1 cut(s)	635
MboII	GAAGA	4 cut(s)	226, 229, 690, 700
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	566
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	3 cut(s)	28, 441, 622
MluNI	TGGCCA	1 cut(s)	651
MnlI	CCTC	5 cut(s)	193, 220, 231, 263, 266
Mox20I	TGGCCA	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	3 cut(s)	243, 542, 660
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	248, 653
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	248, 653
MwoI	GCNNNNNNNGC	3 cut(s)	163, 391, 507
NdeII	GATC	1 cut(s)	635
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	2 cut(s)	316, 615
NspI	RCATGY	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	695
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	384, 558
Psp6I	CCWGG	2 cut(s)	246, 651
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	2 cut(s)	246, 651
PspN4I	GGNNCC	2 cut(s)	316, 615
PspPI	GGNCC	2 cut(s)	164, 613
PvuII	CAGCTG	1 cut(s)	385
SaqAI	TTAA	3 cut(s)	243, 542, 660
SatI	GCNGC	2 cut(s)	383, 557
Sau3AI	GATC	1 cut(s)	635
Sau96I	GGNCC	2 cut(s)	164, 613
ScrFI	CCNGG	2 cut(s)	248, 653
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	391, 727
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	613
Sse9I	AATT	3 cut(s)	28, 441, 622
SsiI	CCGC	3 cut(s)	157, 300, 510
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	246, 651
TaaI	ACNGT	2 cut(s)	497, 572
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	1 cut(s)	634
TasI	AATT	3 cut(s)	28, 441, 622
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	3 cut(s)	243, 542, 660
Tru9I	TTAA	3 cut(s)	243, 542, 660
TscAI	CASTG	4 cut(s)	178, 325, 566, 624
TseI	GCWGC	2 cut(s)	382, 556
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	4 cut(s)	178, 325, 566, 624
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.