Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010885

Physical Location & Seq

Genomic Coordinates Reverse (-)

34590677 .. 34593485

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1238100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAACCGTCGCTCAAATCTCCATCAGTTCCTTAGCTTACAGGCTGAGCAGTTTGCACAATGAGATAAGCAAGAAACCCATCAAATATTTTCCTTTATCGAGGACAAAGATTGGGTTTTTGAAGCAGAGCAAGTTCAGGTTGCAGGCTTATTGGGACGGGGATGGGATTTTGGTGGAAGATGAAGGGTGGAAGAGGAACAAGAACAAGAAAAGGGTGGTCGTGGTGAGGTTGAATCAGGGGTTTGGTGGGTTTAATGGTGGCGGAGGCGGCGGTGGTGGTGGTGGTGGGAAGGATGACGGAGCCACTGCTAGACTTCTGGGTAATTTGGCTGTGGCTATTGGATTGACTTATCTTTCGTTTACTGGGCAGCTTCGCTGGCTTTTGGATGCAATTGTTTCCATTTGGCTGATAGCAGTGCTTGTACCAATTGTTGGTGTGGGTGCTTTTCTGTGGTGGGCAGGGCGGGATATGGTTCAAGACAGTTGTCCAAACTGTGGAAACGCTTTCCAGATTTTCAAGTCTACTTTAAATGATGATTTGCAGCTGTGCCCCTACTGTAGTCAACCTTTCTCAGTGGTGGACGACAAGTTTGTAATGGACCCTATAAAATTCTCCAAACAATCTACAACATTTGGGCAGGCATTCAACGACTTCACCCGTTCCACAAGAGGGAAGGATTCTTCGAAGGCAGTCGTTGATATCGAAGCAGAAGTAAAAGATGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.5

Weight (kDa)

9.13

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27390
fragaria_vesca	FvH4_3g20860 FvH4_3g20860
malus_domestica	MD03G1219800.v1.1 MD11G1238100.v1.1
prunus_persica	Prupe.4G189000_v2.0.a1
pyrus_communis	pycom03g16920 pycom11g20940
rosa_chinensis	RchiOBHm_Chr5g0035191 RchiOBHm_Chr5g0035211
rosa_laevigata	RLG00000033605
rosa_multiflora	Rmu_sc0008176.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045180 Rroxscaffold_1G00045220 Rroxscaffold_1G00045230
rosa_rugosa	Rorug05G0150500
rosa_samantha	Rh5AG243500 Rh5CG274600 Rh5DG252000
rosa_wichuraiana	Rw5G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	434, 497
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	4 cut(s)	264, 270, 273, 466
AcsI	RAATTY	1 cut(s)	611
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	3 cut(s)	434, 497, 672
AgsI	TTSAA	5 cut(s)	124, 235, 479, 520, 649
AluBI	AGCT	3 cut(s)	38, 373, 547
AluI	AGCT	3 cut(s)	38, 373, 547
ApeKI	GCWGC	2 cut(s)	370, 544
ApoI	RAATTY	1 cut(s)	611
ArsI	GACNNNNNNTTYG	4 cut(s)	340, 372, 575, 607
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	238, 649
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	601
BaeGI	GKGCMC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	382, 556
BccI	CCATC	3 cut(s)	32, 89, 158
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	559
BisI	GCNGC	3 cut(s)	271, 371, 545
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	272, 372, 546
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	304, 603
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	379, 712
BmuI	ACTGGG	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 497, 672
Bse1I	ACTGG	1 cut(s)	370
BseGI	GGATG	3 cut(s)	169, 301, 394
BseLI	CCNNNNNNNGG	3 cut(s)	434, 497, 672
BseMII	CTCAG	2 cut(s)	38, 588
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	382, 556
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	434, 497, 672
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	4 cut(s)	264, 270, 273, 466
BspCNI	CTCAG	2 cut(s)	39, 587
BspLI	GGNNCC	2 cut(s)	304, 603
BspT104I	TTCGAA	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	370
Bst4CI	ACNGT	4 cut(s)	10, 485, 497, 560
Bst6I	CTCTTC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	147, 380, 642
BstDEI	CTNAG	3 cut(s)	34, 47, 574
BstF5I	GGATG	3 cut(s)	169, 301, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 270, 379
BstPAI	GACNNNNGTC	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	559
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	382, 556
BtsCI	GGATG	3 cut(s)	169, 301, 394
BtsI	GCAGTG	2 cut(s)	306, 423
BtsIMutI	CAGTG	3 cut(s)	306, 423, 582
Cac8I	GCNNGC	3 cut(s)	147, 380, 642
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	425
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	34, 47, 574
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	703
FaiI	YATR	2 cut(s)	473, 608
FaqI	GGGAC	1 cut(s)	170
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	3 cut(s)	271, 371, 545
FokI	GGATG	3 cut(s)	176, 308, 401
Fsp4HI	GCNGC	3 cut(s)	271, 371, 545
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	271, 371, 545
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	2 cut(s)	235, 680
HphI	GGTGA	2 cut(s)	238, 649
Hpy166II	GTNNAC	4 cut(s)	363, 525, 566, 583
Hpy188III	TCNNGA	2 cut(s)	479, 511
Hpy8I	GTNNAC	4 cut(s)	363, 525, 566, 583
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	179, 286, 670, 682
HpyCH4III	ACNGT	4 cut(s)	10, 485, 497, 560
HpyCH4V	TGCA	5 cut(s)	58, 145, 392, 544, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 270, 379
HpyF3I	CTNAG	3 cut(s)	34, 47, 574
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	2 cut(s)	382, 556
LweI	GCATC	2 cut(s)	379, 712
MaeI	CTAG	1 cut(s)	312
MboII	GAAGA	3 cut(s)	191, 205, 675
MfeI	CAATTG	2 cut(s)	393, 429
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	4 cut(s)	325, 393, 429, 611
MnlI	CCTC	5 cut(s)	96, 189, 222, 260, 665
MseI	TTAA	2 cut(s)	255, 530
MspA1I	CMGCKG	1 cut(s)	547
MunI	CAATTG	2 cut(s)	393, 429
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	11, 270, 379
NlaIV	GGNNCC	2 cut(s)	304, 603
NspV	TTCGAA	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	235, 680
PflMI	CCANNNNNTGG	2 cut(s)	434, 497
PkrI	GCNGC	3 cut(s)	272, 372, 546
PshAI	GACNNNNGTC	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	304, 603
PspPI	GGNCC	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	255, 530
SatI	GCNGC	3 cut(s)	271, 371, 545
Sau96I	GGNCC	1 cut(s)	601
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	6 cut(s)	40, 143, 233, 375, 549, 571
SfaNI	GCATC	2 cut(s)	379, 712
SfcI	CTRYAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	601
Sse9I	AATT	4 cut(s)	325, 393, 429, 611
SsiI	CCGC	4 cut(s)	264, 270, 273, 466
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	10, 485, 497, 560
TaqI	TCGA	3 cut(s)	101, 686, 705
TasI	AATT	4 cut(s)	325, 393, 429, 611
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	235, 680
Tru1I	TTAA	2 cut(s)	255, 530
Tru9I	TTAA	2 cut(s)	255, 530
TscAI	CASTG	3 cut(s)	313, 423, 582
TseI	GCWGC	2 cut(s)	370, 544
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	3 cut(s)	313, 423, 582
Van91I	CCANNNNNTGG	2 cut(s)	434, 497
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.