Rroxscaffold_1G00045180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010885
Physical Location & Seq
Reverse (-)
64197520 .. 64202634
5115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045180.1

Sequence Viewer

Length: 804 bp
ATGAGGTCAGTACTCAATAAGGTGAGCTTCTGCATCTGTTTGCTTAAGGCGTTTTCAGAAATGAGTTTCCTGTATGGGAAATCTTGTGTCTTTGTGATGGATTATTTACAAGAAGTTCGAGAAGGCAAACAGAGCTATAGACAAATGAAGATGTACCTTGATGTCATTTCACAAACTGGTCTTAGTGAGTATGAGATTGGAATACCGAAATTAGGGTCATGGGGGAAAGTGTACAACTACAAGGATTGTCTAAGCAATGGTGATGCTGTTGCAGTGAAGTGGCAATGGAGAGGGAAAGTGGAGTCCAAGGATGGTGACGTAGAGAAATCTGGTCCAAAAGGTGGTGGTGGTGGTGGTGGGAAAGATGATGGAACTACTGCTAGGGTGTTGGGTAATATAGCTGTGGCTATTGGGTTGACTTATCTTTCATTTACTGGGCAGCTTGGTTGGCTTCTGGATGCAATTGTTTCCATTTGGCTCATAGCATTTCTTGTGCCAATTGTTGGTTTGGGTGCTTTTCTGTGGTGGGCAGGACGGGATATGGTTCAAGACAGTTGCCCAAACTGCGGAAATGATTTTCAGATTTTCAACAGTGCCCTTACTAGTATTCTCTCTAACAGAAAGTATGACATTGTTTTAATTTCAGTGGTGGACAACAAGTTTGTAATGGACCCAGTGAATTTCTCTAATCGATCTACAACATTTGGCCAGGCGTTTAATGATTACACACGTTCAAAAACAGGGAAGAAGGATTCTTCTACGGCAGTTGTTGACGTTGAAGCAGAAGTAACGGATGCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.33

Weight (kDa)

5.67

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 341, 503
AciI CCGC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 1 cut(s) 679
AfaI GTAC 3 cut(s) 12, 155, 233
AfiI CCNNNNNNNGG 4 cut(s) 212, 341, 503, 566
AflII CTTAAG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 4 cut(s) 548, 589, 735, 779
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 4 cut(s) 27, 135, 401, 442
AluI AGCT 4 cut(s) 27, 135, 401, 442
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 679
ArsI GACNNNNNNTTYG 4 cut(s) 200, 232, 644, 676
AspS9I GGNCC 2 cut(s) 332, 670
AsuHPI GGTGA 3 cut(s) 34, 272, 326
AvaII GGWCC 2 cut(s) 332, 670
BaeGI GKGCMC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 708
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 91, 305, 362
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 1 cut(s) 710
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 2 cut(s) 381, 603
BfmI CTRYAG 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 2 cut(s) 332, 670
BmgT120I GGNCC 2 cut(s) 332, 670
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 2 cut(s) 444, 668
BmsI GCATC 4 cut(s) 42, 253, 448, 784
BmuI ACTGGG 2 cut(s) 444, 668
Bsa29I ATCGAT 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 341, 503, 566
Bse1I ACTGG 3 cut(s) 181, 439, 674
Bse3DI GCAATG 2 cut(s) 262, 290
BseBI CCWGG 1 cut(s) 710
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 3 cut(s) 316, 463, 799
BseLI CCNNNNNNNGG 4 cut(s) 212, 341, 503, 566
BseMI GCAATG 2 cut(s) 262, 290
BseNI ACTGG 3 cut(s) 181, 439, 674
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 708
BshVI ATCGAT 1 cut(s) 691
BslI CCNNNNNNNGG 4 cut(s) 212, 341, 503, 566
BsnI GGCC 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 692
BspACI CCGC 1 cut(s) 567
BspANI GGCC 1 cut(s) 708
BspDI ATCGAT 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 672
BspTI CTTAAG 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 262, 290
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 3 cut(s) 181, 439, 674
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 554, 593
BstAFI CTTAAG 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 182, 251
BstF5I GGATG 3 cut(s) 316, 463, 799
BstKTI GATC 1 cut(s) 695
BstMBI GATC 1 cut(s) 692
BstMWI GCNNNNNNNGC 3 cut(s) 132, 448, 564
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 691
BsuRI GGCC 1 cut(s) 708
BsuTUI ATCGAT 1 cut(s) 691
BtsCI GGATG 3 cut(s) 316, 463, 799
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 279, 598, 651, 681
Cfr13I GGNCC 2 cut(s) 332, 670
ClaI ATCGAT 1 cut(s) 691
Csp6I GTAC 3 cut(s) 11, 154, 232
CviAII CATG 1 cut(s) 219
CviJI RGCY 8 cut(s) 27, 135, 401, 407, 442, 451, 478, 708
CviKI_1 RGCY 8 cut(s) 27, 135, 401, 407, 442, 451, 478, 708
CviQI GTAC 3 cut(s) 11, 154, 232
DdeI CTNAG 2 cut(s) 182, 251
DpnI GATC 1 cut(s) 694
DpnII GATC 1 cut(s) 692
EaeI YGGCCR 1 cut(s) 706
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 332, 670
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 222
FaiI YATR 8 cut(s) 75, 138, 192, 220, 398, 482, 542, 627
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 2 cut(s) 323, 470
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 381, 603
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 708
Hin1II CATG 1 cut(s) 222
HincII GTYRAC 2 cut(s) 417, 772
HindII GTYRAC 2 cut(s) 417, 772
HinfI GANTC 2 cut(s) 302, 752
HphI GGTGA 3 cut(s) 34, 272, 326
Hpy166II GTNNAC 4 cut(s) 232, 417, 652, 772
Hpy188I TCNGA 2 cut(s) 58, 582
Hpy188III TCNNGA 3 cut(s) 119, 455, 548
Hpy8I GTNNAC 4 cut(s) 232, 417, 652, 772
HpyAV CCTTC 2 cut(s) 116, 742
HpyCH4III ACNGT 2 cut(s) 554, 593
HpyCH4IV ACGT 3 cut(s) 318, 730, 774
HpyCH4V TGCA 4 cut(s) 33, 272, 461, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 448, 564
HpyF3I CTNAG 2 cut(s) 182, 251
HpySE526I ACGT 3 cut(s) 318, 730, 774
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 692
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 4 cut(s) 42, 253, 448, 784
MaeI CTAG 2 cut(s) 381, 603
MaeII ACGT 3 cut(s) 318, 730, 774
MaeIII GTNAC 2 cut(s) 314, 787
MalI GATC 1 cut(s) 694
MboI GATC 1 cut(s) 692
MboII GAAGA 3 cut(s) 160, 747, 757
MfeI CAATTG 2 cut(s) 462, 498
MhlI GDGCHC 1 cut(s) 598
MlsI TGGCCA 1 cut(s) 708
MluCI AATT 5 cut(s) 209, 462, 498, 639, 679
MluNI TGGCCA 1 cut(s) 708
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 1 cut(s) 284
Mox20I TGGCCA 1 cut(s) 708
MscI TGGCCA 1 cut(s) 708
MseI TTAA 3 cut(s) 45, 638, 717
Msp20I TGGCCA 1 cut(s) 708
MspCI CTTAAG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 710
MunI CAATTG 2 cut(s) 462, 498
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 132, 448, 564
NdeII GATC 1 cut(s) 692
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 752
PflMI CCANNNNNTGG 2 cut(s) 341, 503
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 2 cut(s) 332, 670
RsaI GTAC 3 cut(s) 12, 155, 233
RsaNI GTAC 3 cut(s) 11, 154, 232
SaqAI TTAA 3 cut(s) 45, 638, 717
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 1 cut(s) 692
Sau96I GGNCC 2 cut(s) 332, 670
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 4 cut(s) 42, 253, 448, 784
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 2 cut(s) 332, 670
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 5 cut(s) 209, 462, 498, 639, 679
SsiI CCGC 1 cut(s) 567
SspMI CTAG 2 cut(s) 381, 603
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 554, 593
TaiI ACGT 3 cut(s) 321, 733, 777
TaqI TCGA 2 cut(s) 118, 691
TasI AATT 5 cut(s) 209, 462, 498, 639, 679
TatI WGTACW 2 cut(s) 10, 231
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 3 cut(s) 45, 638, 717
Tru9I TTAA 3 cut(s) 45, 638, 717
TscAI CASTG 4 cut(s) 279, 598, 651, 681
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 161, 417
TspRI CASTG 4 cut(s) 279, 598, 651, 681
Van91I CCANNNNNTGG 2 cut(s) 341, 503
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 332, 670
XapI RAATTY 1 cut(s) 679
XspI CTAG 2 cut(s) 381, 603
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.