Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010885

Physical Location & Seq

Genomic Coordinates Reverse (-)

30428111 .. 30431528

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1219800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCAACCGTCGTTCAAATCTCCATAAATTCCCTGTCTTTCAGGCTGAGCAGTTTGCACAATAGGACATGCAAGAAACCCATCAAATATTTTCCTCTGTCGAGGGCAAATATTGGGTTTTTGAAGCAGAGCAAGTTCAGGTTGCAGGCGTATTGGGACAGGGATGGGATTTTGGTGACAGATGAGGGGTGGAAGAGGAAGAAGAAGAAGAAAAGGGAGGTCGTGGTGAGGTTGAATCAGGGGTTTGGTGGGTTTAATGGCGGCGGAGGCGGTGGCGGTGGTGGTGGGAAAGATGACGGAGCCACTGCTAGACTTCTGGGTAATTTGGCTGTAGCTATTGGATTGACTTATCTTTCGTTTACTGGTCAGCTTGGCTGGCTTTTGGATGCTATTGTTTCCATTTGGCTGATTGCAGTGCTTGTACCAATTGTTGGTGTGGGTGCTTTTCTGTGGTGGGCAGGGCGGGATATGGTTCAAGACAGTTGCCCAAACTGTGGAAACGATTTCCAGATTTTCAAGTCGACTTTAAATGATGATTTGCAGCTCTGCCCTTACTGTAGTCAACCTTTTTCCGTGGTGGACGACAAGTTCGTAATGGACCCTATAAAATTCTCCAAACAATCTACGACATTTGGGCAGGCATTCAACGACTTCACCCGTTCCACAAGAGGGAAGCATTCTTCTACGGCAGTCGTTGATATCGAAGCGGATGTAAAAGATGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

9.3

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27390
fragaria_vesca	FvH4_3g20860 FvH4_3g20860
malus_domestica	MD03G1219800.v1.1 MD11G1238100.v1.1
prunus_persica	Prupe.4G189000_v2.0.a1
pyrus_communis	pycom03g16920 pycom11g20940
rosa_chinensis	RchiOBHm_Chr5g0035191 RchiOBHm_Chr5g0035211
rosa_laevigata	RLG00000033605
rosa_multiflora	Rmu_sc0008176.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045180 Rroxscaffold_1G00045220 Rroxscaffold_1G00045230
rosa_rugosa	Rorug05G0150500
rosa_samantha	Rh5AG243500 Rh5CG274600 Rh5DG252000
rosa_wichuraiana	Rw5G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	431, 494
AccI	GTMKAC	1 cut(s)	521
AciI	CCGC	6 cut(s)	261, 264, 270, 276, 463, 707
AcsI	RAATTY	2 cut(s)	28, 608
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	431, 494, 669
AgsI	TTSAA	6 cut(s)	17, 124, 235, 476, 517, 646
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	3 cut(s)	335, 370, 544
AluI	AGCT	3 cut(s)	335, 370, 544
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	2 cut(s)	28, 608
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 572, 604
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	3 cut(s)	187, 238, 646
AvaII	GGWCC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	2 cut(s)	89, 158
BceAI	ACGGC	1 cut(s)	702
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	2 cut(s)	330, 556
BisI	GCNGC	2 cut(s)	262, 542
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	263, 543
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	301, 600
BmsI	GCATC	2 cut(s)	376, 709
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 494, 669
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	169, 391, 715
BseLI	CCNNNNNNNGG	3 cut(s)	431, 494, 669
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	431, 494, 669
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	641, 676
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	6 cut(s)	261, 264, 270, 276, 463, 707
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	301, 600
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	573
Bst4CI	ACNGT	4 cut(s)	10, 482, 494, 557
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	147, 377, 639
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	169, 391, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 376
BstNSI	RCATGY	1 cut(s)	72
BstSFI	CTRYAG	2 cut(s)	330, 556
BstV1I	GCAGC	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	3 cut(s)	169, 391, 715
BtsI	GCAGTG	2 cut(s)	303, 420
BtsIMutI	CAGTG	2 cut(s)	303, 420
Cac8I	GCNNGC	3 cut(s)	147, 377, 639
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	9 cut(s)	46, 302, 329, 335, 370, 375, 379, 406, 544
CviKI_1	RGCY	9 cut(s)	46, 302, 329, 335, 370, 375, 379, 406, 544
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	47
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	700
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	26, 70, 470, 605
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	68
FauI	CCCGC	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	262, 542
FokI	GGATG	3 cut(s)	176, 398, 722
Fsp4HI	GCNGC	2 cut(s)	262, 542
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	262, 542
Hin1II	CATG	1 cut(s)	72
HincII	GTYRAC	2 cut(s)	522, 563
HindII	GTYRAC	2 cut(s)	522, 563
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	3 cut(s)	187, 238, 646
Hpy166II	GTNNAC	4 cut(s)	360, 522, 563, 580
Hpy188III	TCNNGA	2 cut(s)	476, 508
Hpy8I	GTNNAC	4 cut(s)	360, 522, 563, 580
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	10, 482, 494, 557
HpyCH4V	TGCA	6 cut(s)	58, 72, 145, 413, 541, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 376
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	2 cut(s)	376, 709
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	175
MboII	GAAGA	6 cut(s)	205, 211, 214, 217, 220, 672
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	4 cut(s)	28, 322, 426, 608
MnlI	CCTC	8 cut(s)	96, 105, 178, 189, 211, 222, 260, 662
MseI	TTAA	2 cut(s)	255, 527
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	2 cut(s)	641, 676
MwoI	GCNNNNNNNGC	2 cut(s)	267, 376
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	2 cut(s)	301, 600
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	2 cut(s)	588, 699
PctI	GAATGC	2 cut(s)	641, 676
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	2 cut(s)	431, 494
PkrI	GCNGC	2 cut(s)	263, 543
PspN4I	GGNNCC	2 cut(s)	301, 600
PspPI	GGNCC	1 cut(s)	598
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	255, 527
SatI	GCNGC	2 cut(s)	262, 542
Sau96I	GGNCC	1 cut(s)	598
SetI	ASST	7 cut(s)	143, 222, 233, 337, 372, 546, 568
SfaNI	GCATC	2 cut(s)	376, 709
SfcI	CTRYAG	2 cut(s)	330, 556
SinI	GGWCC	1 cut(s)	598
Sse9I	AATT	4 cut(s)	28, 322, 426, 608
SsiI	CCGC	6 cut(s)	261, 264, 270, 276, 463, 707
SspI	AATATT	2 cut(s)	89, 112
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	4 cut(s)	10, 482, 494, 557
TaqI	TCGA	3 cut(s)	101, 521, 702
TasI	AATT	4 cut(s)	28, 322, 426, 608
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	255, 527
Tru9I	TTAA	2 cut(s)	255, 527
TscAI	CASTG	2 cut(s)	310, 420
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	2 cut(s)	312, 562
TspRI	CASTG	2 cut(s)	310, 420
Van91I	CCANNNNNTGG	2 cut(s)	431, 494
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	2 cut(s)	28, 608
XceI	RCATGY	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.