Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010885

Physical Location & Seq

Genomic Coordinates Reverse (-)

24081354 .. 24083512

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCAACCGTCGCTCGAATCTCCATCAGTTCCTTAGCTTACAGGCTGAGCAGTTTGCACAATGAGATAAGCAAGAAACCCATCAAATGTTTTCCCTTATCGAGGATAAAGATTGGGTTTTTGAAGCAGAGCAAGTTCAGGTTGCAGGCTTATTGGGACAGGGATGGGATTTTGGTGGAAGATGAAGGGTGGAAGAGGAACAAGAACAAGAAAAGGGAGGTCGTGGTGAGGTTGAATCAGGGGTTTGGTGGGTTTAATGGTGGCGGAGGCGGTGGTGGTGGTGGTGGGAAGGATGACGGAGCCACTGCTAGACTTCTGGGTAATTTGGCTGTGGCTATTGGATTGACTTATCTTTCGTTTACTGGGCAGCTTGGCTGGCTTTTGGATGCAATTGTTTCCATTTGGCTGATTGCAGTGCTTGTACCAATTGTTGGTGTGGGTGCTTTTCTGTGGTGGGCAGGGCGCGATATGGTTCAAGACAGTTGTCCAAACTGTGGAAACGCATTCCAGATTTTCAAGTCTACTTTAAATGATGATTTGCAGCTGTGCCCCTACTGTAGTCAACCTTTCTCAGTGGTGGACGACAAGTTCGTAATGGACCCTATAAAATTCTCCAAACAATCTACAACATTTGGGCAGGCATTCAACGACTTCACCCGTTCCACAAGAGGGAAGGATTCTTCGAAGGCAGTCGTTGATATCGAAGCAGAAGTAAAAGATGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.46

Weight (kDa)

9.07

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27390
fragaria_vesca	FvH4_3g20860 FvH4_3g20860
malus_domestica	MD03G1219800.v1.1 MD11G1238100.v1.1
prunus_persica	Prupe.4G189000_v2.0.a1
pyrus_communis	pycom03g16920 pycom11g20940
rosa_chinensis	RchiOBHm_Chr5g0035191 RchiOBHm_Chr5g0035211
rosa_laevigata	RLG00000033605
rosa_multiflora	Rmu_sc0008176.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045180 Rroxscaffold_1G00045220 Rroxscaffold_1G00045230
rosa_rugosa	Rorug05G0150500
rosa_samantha	Rh5AG243500 Rh5CG274600 Rh5DG252000
rosa_wichuraiana	Rw5G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	431, 494
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	1 cut(s)	465
AciI	CCGC	2 cut(s)	264, 270
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	4 cut(s)	102, 431, 494, 669
AgsI	TTSAA	5 cut(s)	124, 235, 476, 517, 646
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	3 cut(s)	38, 370, 544
AluI	AGCT	3 cut(s)	38, 370, 544
ApeKI	GCWGC	2 cut(s)	367, 541
ApoI	RAATTY	1 cut(s)	608
ArsI	GACNNNNNNTTYG	4 cut(s)	337, 369, 572, 604
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	238, 646
AsuII	TTCGAA	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	379, 553
BccI	CCATC	3 cut(s)	32, 89, 158
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	556
BisI	GCNGC	2 cut(s)	368, 542
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	369, 543
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	301, 600
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	376, 709
BmuI	ACTGGG	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 431, 494, 669
Bse1I	ACTGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	169, 298, 391
BseLI	CCNNNNNNNGG	4 cut(s)	102, 431, 494, 669
BseMII	CTCAG	2 cut(s)	38, 585
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	379, 553
Bsh1236I	CGCG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	102, 431, 494, 669
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	503, 641
Bsp119I	TTCGAA	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	264, 270
BspCNI	CTCAG	2 cut(s)	39, 584
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	301, 600
BspT104I	TTCGAA	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	10, 482, 494, 557
Bst6I	CTCTTC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	147, 377, 639
BstDEI	CTNAG	3 cut(s)	34, 47, 571
BstENI	CCTNNNNNAGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	169, 298, 391
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 376
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	379, 553
BtsCI	GGATG	3 cut(s)	169, 298, 391
BtsI	GCAGTG	2 cut(s)	303, 420
BtsIMutI	CAGTG	3 cut(s)	303, 420, 579
Cac8I	GCNNGC	3 cut(s)	147, 377, 639
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	3 cut(s)	34, 47, 571
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	700
FaiI	YATR	2 cut(s)	470, 605
FaqI	GGGAC	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	368, 542
FokI	GGATG	3 cut(s)	176, 305, 398
Fsp4HI	GCNGC	2 cut(s)	368, 542
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	2 cut(s)	368, 542
HhaI	GCGC	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	3 cut(s)	18, 235, 677
HphI	GGTGA	2 cut(s)	238, 646
Hpy166II	GTNNAC	4 cut(s)	360, 522, 563, 580
Hpy188III	TCNNGA	2 cut(s)	476, 508
Hpy8I	GTNNAC	4 cut(s)	360, 522, 563, 580
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	179, 283, 667, 679
HpyCH4III	ACNGT	4 cut(s)	10, 482, 494, 557
HpyCH4V	TGCA	6 cut(s)	58, 145, 389, 413, 541, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 376
HpyF3I	CTNAG	3 cut(s)	34, 47, 571
HspAI	GCGC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	379, 553
LweI	GCATC	2 cut(s)	376, 709
MaeI	CTAG	1 cut(s)	309
MboII	GAAGA	3 cut(s)	191, 205, 672
MfeI	CAATTG	2 cut(s)	390, 426
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	4 cut(s)	322, 390, 426, 608
MnlI	CCTC	6 cut(s)	96, 189, 211, 222, 260, 662
MseI	TTAA	2 cut(s)	255, 527
MspA1I	CMGCKG	1 cut(s)	544
MunI	CAATTG	2 cut(s)	390, 426
Mva1269I	GAATGC	2 cut(s)	503, 641
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	11, 376
NlaIV	GGNNCC	2 cut(s)	301, 600
NspV	TTCGAA	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	2 cut(s)	588, 699
PctI	GAATGC	2 cut(s)	503, 641
PfeI	GAWTC	3 cut(s)	18, 235, 677
PflMI	CCANNNNNTGG	2 cut(s)	431, 494
PkrI	GCNGC	2 cut(s)	369, 543
PshAI	GACNNNNGTC	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	301, 600
PspPI	GGNCC	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	255, 527
SatI	GCNGC	2 cut(s)	368, 542
Sau96I	GGNCC	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	7 cut(s)	40, 143, 222, 233, 372, 546, 568
SfaNI	GCATC	2 cut(s)	376, 709
SfcI	CTRYAG	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	683
SinI	GGWCC	1 cut(s)	598
Sse9I	AATT	4 cut(s)	322, 390, 426, 608
SsiI	CCGC	2 cut(s)	264, 270
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	4 cut(s)	10, 482, 494, 557
TaqI	TCGA	4 cut(s)	16, 101, 683, 702
TasI	AATT	4 cut(s)	322, 390, 426, 608
TfiI	GAWTC	3 cut(s)	18, 235, 677
Tru1I	TTAA	2 cut(s)	255, 527
Tru9I	TTAA	2 cut(s)	255, 527
TscAI	CASTG	3 cut(s)	310, 420, 579
TseI	GCWGC	2 cut(s)	367, 541
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	3 cut(s)	310, 420, 579
Van91I	CCANNNNNTGG	2 cut(s)	431, 494
VpaK11BI	GGWCC	1 cut(s)	598
XagI	CCTNNNNNAGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.