Rh5AG243500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010885
Physical Location & Seq
Forward (+)
29680473 .. 29714848
34376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG243500.1

Sequence Viewer

Length: 1449 bp
ATGACAGCCATTGTTCAAATCTCCATCAATTCCTTAGCTTTCAGGTTGAGCAGTTTGCAATATGACACATATAACAAACCCATCAAGTATTGCTCTCTACCCAGAACAAAGATTGCTTCTTTGAAGCTCAACAGGTTCAAGTTGAGGGCTTTTTGGGAGGGTGGGTCTATCAGTGGAGATGGGATTTTGGTGAAAGATGAGGGGTGTAATAGGAAGAAGAAAAGAGAGGTTGTGGTGAGGTTTAATCAGGGGTTTGGGTTTAATGGTGGAGGTGGTGGGAAAGATGATGGAACTACTGCTAGGGTGTTGGGTAATATAGCTGTGGCTATTGGGTTGACTTATCTTTCATTTACTGGGCAGCTTGGTTGGCTTTTGGATGCTATTGTTTCCATTTGGCTCATAGCATTTCTTGTGCCAATTGTTGGTTTGGGTGCTTTTCTGTGGTGGGCAGGACGGGATATGGTTCAAGACAGTTGCCCAAACTGCGGAAATGATTTTCAGATTTTCAAATCTACTTTAAATGATGATATGCAGCAGTGCCCTTACTGTAGTCAGCCATTCTCTGTGGTGGACAACAAGTTTGTAATGGACCCAGTGAATTTCTCTAATCGATCTACAACATTTGGCCAGGCATTTAATGACTACACACGTTCAAAAACAGGCAATTTGGTAGCAATAACCCTCTTAAACCCTTTCACCGGACGCACCATCACCCTTCCACCGGTACCAGCAACCGTTCCACCAGTACGAGCAACAGGTTCCTACTACATCAAGAAAGTTGTACTGTCTGCTGACCCTTCTTCGTTCCCTGATGATTATCAAGTTCTAGTAATTTATAACGAGCGTGTTTATAATGCTGACACCAGGATAGCCCATTTTAAGTCGGGGGAAGATAGTTGGACTCTCATAGATAGTGGGACGACTATCAGATTCACCCATGCAGTTTGCTACAAAGGTCAATTTCTAGTTTGTGGTGGCACAAATGTTGATTTTTCGGTTTTTGCGGCAGATGTCTGCAGAAAAAGAATTACTCAACTCATGTATGGTGAACAATTTGTGCGCCGACATGAGGTTATGAATACATACCTTGTGGAATCGTCAAAGGGAGATCTATTGCTGGTTAGGAGGTTGCACTTGCTTGATATTGATCGTTGTCTGATCGTCACGGTTGATAAATTGATATATGATTTTGGTGATGATGAACTCACACCCATACCCATTGAGAGTATTGGAAGTGATGCTTTGTTTTTGGATCGAAATCAATCTATTTGTGTGTCTGCCTTGGACTTTCCAGAGTGTCATCCAAAGTCTATATACTTCATCGATGGTATTTTCAGCTTGGAAAGCAGACAAATGCATTGGTTTGACTCCTTAAAGCCAACAATGTCAGCAATATGGATTTCGCCAACGTTATGTGTTGAAAACCAACCTCTACCAACATGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

53.87

Weight (kDa)

6.97

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 225 - 455 8e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 837, 852
Acc65I GGTACC 1 cut(s) 724
AccB1I GGYRCC 1 cut(s) 724
AccB7I CCANNNNNTGG 1 cut(s) 422
AciI CCGC 2 cut(s) 486, 1004
AclI AACGTT 1 cut(s) 1409
AclWI GGATC 1 cut(s) 1260
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 1 cut(s) 598
AfaI GTAC 3 cut(s) 726, 747, 783
AfiI CCNNNNNNNGG 5 cut(s) 422, 485, 698, 721, 1069
AflIII ACRYGT 1 cut(s) 647
AgeI ACCGGT 1 cut(s) 721
AgsI TTSAA 7 cut(s) 17, 124, 139, 467, 508, 654, 1421
AjnI CCWGG 2 cut(s) 627, 863
AluBI AGCT 5 cut(s) 38, 127, 320, 361, 1338
AluI AGCT 5 cut(s) 38, 127, 320, 361, 1338
AlwI GGATC 1 cut(s) 1260
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 2 cut(s) 358, 532
ApoI RAATTY 1 cut(s) 598
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AsiGI ACCGGT 1 cut(s) 721
Asp718I GGTACC 1 cut(s) 724
AspLEI GCGC 1 cut(s) 1062
AspS9I GGNCC 1 cut(s) 589
AsuHPI GGTGA 7 cut(s) 202, 247, 688, 703, 925, 1058, 1205
AvaII GGWCC 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 542
BalI TGGCCA 1 cut(s) 627
BanI GGYRCC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 370, 544
BccI CCATC 6 cut(s) 32, 89, 173, 281, 716, 1319
BciT130I CCWGG 2 cut(s) 629, 865
BfaI CTAG 3 cut(s) 300, 827, 965
BfmI CTRYAG 2 cut(s) 547, 1015
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 3 cut(s) 359, 533, 1005
BlsI GCNGC 3 cut(s) 360, 534, 1006
Bme1390I CCNGG 2 cut(s) 629, 865
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 589
BmiI GGNNCC 3 cut(s) 591, 726, 760
BmrFI CCNGG 2 cut(s) 629, 865
BmrI ACTGGG 2 cut(s) 363, 587
BmsI GCATC 2 cut(s) 367, 1228
BmuI ACTGGG 2 cut(s) 363, 587
Bpu10I CCTNAGC 1 cut(s) 34
Bsa29I ATCGAT 2 cut(s) 610, 1323
BsaBI GATNNNNATC 3 cut(s) 816, 1146, 1257
BsaJI CCNNGG 1 cut(s) 1281
BsaWI WCCGGW 2 cut(s) 698, 721
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 5 cut(s) 422, 485, 698, 721, 1069
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 3 cut(s) 358, 593, 743
Bse8I GATNNNNATC 3 cut(s) 816, 1146, 1257
BseBI CCWGG 2 cut(s) 629, 865
BseCI ATCGAT 2 cut(s) 610, 1323
BseDI CCNNGG 1 cut(s) 1281
BseGI GGATG 2 cut(s) 382, 1300
BseJI GATNNNNATC 3 cut(s) 816, 1146, 1257
BseLI CCNNNNNNNGG 5 cut(s) 422, 485, 698, 721, 1069
BseNI ACTGG 3 cut(s) 358, 593, 743
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 2 cut(s) 370, 544
BshFI GGCC 1 cut(s) 627
BshNI GGYRCC 1 cut(s) 724
BshTI ACCGGT 1 cut(s) 721
BshVI ATCGAT 2 cut(s) 610, 1323
BsiSI CCGG 2 cut(s) 699, 722
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 5 cut(s) 422, 485, 698, 721, 1069
BsmFI GGGAC 1 cut(s) 931
BsnI GGCC 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
BspACI CCGC 2 cut(s) 486, 1004
BspANI GGCC 1 cut(s) 627
BspDI ATCGAT 2 cut(s) 610, 1323
BspLI GGNNCC 3 cut(s) 591, 726, 760
BspMAI CTGCAG 1 cut(s) 1019
BspPI GGATC 1 cut(s) 1260
BspT107I GGYRCC 1 cut(s) 724
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 3 cut(s) 358, 593, 743
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 1 cut(s) 1281
BssMI GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
BssT1I CCWWGG 1 cut(s) 1281
Bst2UI CCWGG 2 cut(s) 629, 865
Bst4CI ACNGT 5 cut(s) 473, 548, 736, 786, 1168
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 382, 1300
BstHHI GCGC 1 cut(s) 1062
BstKTI GATC 5 cut(s) 614, 1111, 1150, 1161, 1255
BstMBI GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
BstMWI GCNNNNNNNGC 3 cut(s) 367, 483, 1344
BstNI CCWGG 2 cut(s) 629, 865
BstNSI RCATGY 1 cut(s) 1443
BstSCI CCNGG 2 cut(s) 627, 863
BstSFI CTRYAG 2 cut(s) 547, 1015
BstSLI GKGCMC 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 370, 544
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
Bsu15I ATCGAT 2 cut(s) 610, 1323
BsuRI GGCC 1 cut(s) 627
BsuTUI ATCGAT 2 cut(s) 610, 1323
BtsCI GGATG 2 cut(s) 382, 1300
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 3 cut(s) 178, 542, 600
CfoI GCGC 1 cut(s) 1062
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 1 cut(s) 589
ClaI ATCGAT 2 cut(s) 610, 1323
CseI GACGC 1 cut(s) 711
Csp6I GTAC 3 cut(s) 725, 746, 782
CspAI ACCGGT 1 cut(s) 721
CviAII CATG 4 cut(s) 938, 1039, 1067, 1440
CviQI GTAC 3 cut(s) 725, 746, 782
DdeI CTNAG 1 cut(s) 34
DpnI GATC 5 cut(s) 613, 1110, 1149, 1160, 1254
DpnII GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
DraI TTTAAA 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 1281
Eco47I GGWCC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 627, 863
EcoT14I CCWWGG 1 cut(s) 1281
EcoT22I ATGCAT 1 cut(s) 1359
ErhI CCWWGG 1 cut(s) 1281
FaeI CATG 4 cut(s) 941, 1042, 1070, 1443
FalI AAGNNNNNCTT 2 cut(s) 1225, 1257
FaqI GGGAC 1 cut(s) 931
FatI CATG 4 cut(s) 937, 1038, 1066, 1439
Fnu4HI GCNGC 3 cut(s) 359, 533, 1005
FokI GGATG 2 cut(s) 389, 1287
Fsp4HI GCNGC 3 cut(s) 359, 533, 1005
FspBI CTAG 3 cut(s) 300, 827, 965
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 3 cut(s) 359, 533, 1005
HaeIII GGCC 1 cut(s) 627
HapII CCGG 2 cut(s) 699, 722
HgaI GACGC 1 cut(s) 711
HhaI GCGC 1 cut(s) 1062
Hin1II CATG 4 cut(s) 941, 1042, 1070, 1443
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 4 cut(s) 901, 930, 1094, 1367
HpaII CCGG 2 cut(s) 699, 722
HphI GGTGA 7 cut(s) 202, 247, 688, 703, 925, 1058, 1205
Hpy166II GTNNAC 3 cut(s) 336, 571, 1049
Hpy188I TCNGA 3 cut(s) 501, 929, 1158
Hpy188III TCNNGA 3 cut(s) 467, 772, 1292
Hpy8I GTNNAC 3 cut(s) 336, 571, 1049
HpyAV CCTTC 2 cut(s) 725, 807
HpyCH4III ACNGT 5 cut(s) 473, 548, 736, 786, 1168
HpyCH4IV ACGT 2 cut(s) 649, 1409
HpyCH4V TGCA 7 cut(s) 58, 532, 941, 1017, 1132, 1357, 1443
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 483, 1344
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 2 cut(s) 649, 1409
Hsp92II CATG 4 cut(s) 941, 1042, 1070, 1443
HspAI GCGC 1 cut(s) 1060
KpnI GGTACC 1 cut(s) 728
Kzo9I GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
Lsp1109I GCAGC 2 cut(s) 370, 544
LweI GCATC 2 cut(s) 367, 1228
MaeI CTAG 3 cut(s) 300, 827, 965
MaeII ACGT 2 cut(s) 649, 1409
MaeIII GTNAC 1 cut(s) 1162
MalI GATC 5 cut(s) 613, 1110, 1149, 1160, 1254
MboI GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
MboII GAAGA 4 cut(s) 226, 229, 792, 902
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 9 cut(s) 28, 417, 598, 664, 831, 959, 1026, 1052, 1175
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 2 cut(s) 895, 1361
MmeI TCCRAC 1 cut(s) 878
Mox20I TGGCCA 1 cut(s) 627
Mph1103I ATGCAT 1 cut(s) 1359
MscI TGGCCA 1 cut(s) 627
MseI TTAA 7 cut(s) 243, 261, 518, 636, 686, 879, 1373
Msp20I TGGCCA 1 cut(s) 627
MspI CCGG 2 cut(s) 699, 722
MspR9I CCNGG 2 cut(s) 629, 865
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 2 cut(s) 629, 865
MwoI GCNNNNNNNGC 3 cut(s) 367, 483, 1344
NdeII GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
NlaIII CATG 4 cut(s) 941, 1042, 1070, 1443
NlaIV GGNNCC 3 cut(s) 591, 726, 760
NmuCI GTSAC 1 cut(s) 1162
NsiI ATGCAT 1 cut(s) 1359
NspI RCATGY 1 cut(s) 1443
PfeI GAWTC 2 cut(s) 930, 1094
PflMI CCANNNNNTGG 1 cut(s) 422
PinAI ACCGGT 1 cut(s) 721
PkrI GCNGC 3 cut(s) 360, 534, 1006
PleI GAGTC 2 cut(s) 895, 1361
PpsI GAGTC 2 cut(s) 895, 1361
PsiI TTATAA 2 cut(s) 837, 852
Psp1406I AACGTT 1 cut(s) 1409
Psp6I CCWGG 2 cut(s) 627, 863
PspGI CCWGG 2 cut(s) 627, 863
PspN4I GGNNCC 3 cut(s) 591, 726, 760
PspPI GGNCC 1 cut(s) 589
PstI CTGCAG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 1108
RsaI GTAC 3 cut(s) 726, 747, 783
RsaNI GTAC 3 cut(s) 725, 746, 782
SaqAI TTAA 7 cut(s) 243, 261, 518, 636, 686, 879, 1373
SatI GCNGC 3 cut(s) 359, 533, 1005
Sau3AI GATC 5 cut(s) 611, 1108, 1147, 1158, 1252
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 2 cut(s) 895, 1361
ScrFI CCNGG 2 cut(s) 629, 865
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 2 cut(s) 367, 1228
SfcI CTRYAG 2 cut(s) 547, 1015
SinI GGWCC 1 cut(s) 589
Sse9I AATT 9 cut(s) 28, 417, 598, 664, 831, 959, 1026, 1052, 1175
SsiI CCGC 2 cut(s) 486, 1004
SspMI CTAG 3 cut(s) 300, 827, 965
StyD4I CCNGG 2 cut(s) 627, 863
StyI CCWWGG 1 cut(s) 1281
TaaI ACNGT 5 cut(s) 473, 548, 736, 786, 1168
TaiI ACGT 2 cut(s) 652, 1412
TaqI TCGA 3 cut(s) 610, 1255, 1323
TasI AATT 9 cut(s) 28, 417, 598, 664, 831, 959, 1026, 1052, 1175
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 1007
TfiI GAWTC 2 cut(s) 930, 1094
Tru1I TTAA 7 cut(s) 243, 261, 518, 636, 686, 879, 1373
Tru9I TTAA 7 cut(s) 243, 261, 518, 636, 686, 879, 1373
TscAI CASTG 3 cut(s) 178, 542, 600
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 2 cut(s) 358, 532
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 4 cut(s) 336, 1091, 1215, 1309
TspRI CASTG 3 cut(s) 178, 542, 600
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 1 cut(s) 598
XceI RCATGY 1 cut(s) 1443
XspI CTAG 3 cut(s) 300, 827, 965
Zsp2I ATGCAT 1 cut(s) 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.