RLG00000033605

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010885
Physical Location & Seq
Forward (+)
29557572 .. 29560011
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033605

Sequence Viewer

Length: 729 bp
ATGACAGCCATTGTCCAAATCTCCATCAATTCCTTAGCTTTCAGGTTCAGCAGTTTGCAATATGACACATATAACAAACCCATCAAGTATTGCTCTCCACCCAGAACAAAGATTGCTTCTTTGAAGCTCAACAGGTTAAAGTTGAGGGCTTTTTGGGAGAGAGGGTCTATCAGTGGAGATGGGATTTTGGTGAAAGATGAGGGGTGGAATAGGAAGAAGAAAAGAGATGTTGTGGTGAGGTTTAATCAGGGGTTTGGGTTTAATGGTGGAGGTGGTGGTGGTGGGAAAGATGATGGAACTACTGCTAGGGTGTTGGGTAATATAGCTGTGGCTATTGGATTGACTTATCTTTCGTTTACTGGGCAGCTCGGTTGGCTTTTGGATGCAATTGTTTCCATTTGGCTCATAGCATTTCTTGTGCCAATTGTTGGTTTGGGTGCTTTTCTGTGGTGGGCAGGACGGGATATGGTTCAAGACAGTTGCCCAAACTGCGGAAATGATTTTCAGATTTTCAAATCTACTTTAAATGATGGTATGCAGCAGTGCCCCTACTGTAGTCAGCCATTCTCTGTGGTGGACAACAAGTTTGTAATGGACCCAGTGAATTTCTCTAATCGATCTACAACATTTGGCCAGGCATTTACTGACTACACACGCTCAAAAACAGGGAAGAAGGATTCTTCTACGGCAGTCGTTGATGTTGAAGCAGAAGTAATGGATGCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.63

Weight (kDa)

8.94

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 428
AciI CCGC 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 1 cut(s) 604
AfiI CCNNNNNNNGG 2 cut(s) 428, 491
AgsI TTSAA 4 cut(s) 124, 473, 514, 704
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 4 cut(s) 38, 127, 326, 367
AluI AGCT 4 cut(s) 38, 127, 326, 367
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 2 cut(s) 364, 538
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 4 cut(s) 334, 366, 569, 601
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 202, 247
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 633
BbvI GCAGC 2 cut(s) 376, 550
BccI CCATC 5 cut(s) 32, 89, 173, 287, 524
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 1 cut(s) 635
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 553
BisI GCNGC 2 cut(s) 365, 539
BlsI GCNGC 2 cut(s) 366, 540
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 635
BmrI ACTGGG 2 cut(s) 369, 593
BmsI GCATC 2 cut(s) 373, 709
BmuI ACTGGG 2 cut(s) 369, 593
Bpu10I CCTNAGC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 491
Bse1I ACTGG 2 cut(s) 364, 599
BseBI CCWGG 1 cut(s) 635
BseCI ATCGAT 1 cut(s) 616
BseGI GGATG 2 cut(s) 388, 724
BseLI CCNNNNNNNGG 2 cut(s) 428, 491
BseNI ACTGG 2 cut(s) 364, 599
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 2 cut(s) 376, 550
BshFI GGCC 1 cut(s) 633
BshVI ATCGAT 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 428, 491
BsnI GGCC 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 1 cut(s) 617
BspACI CCGC 1 cut(s) 492
BspANI GGCC 1 cut(s) 633
BspDI ATCGAT 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 597
BsrI ACTGG 2 cut(s) 364, 599
BssMI GATC 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 479, 554
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 388, 724
BstKTI GATC 1 cut(s) 620
BstMBI GATC 1 cut(s) 617
BstMWI GCNNNNNNNGC 2 cut(s) 373, 489
BstNI CCWGG 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 633
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 376, 550
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 1 cut(s) 633
BsuTUI ATCGAT 1 cut(s) 616
BtsCI GGATG 2 cut(s) 388, 724
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 3 cut(s) 178, 548, 606
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 616
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 619
DpnII GATC 1 cut(s) 617
DraI TTTAAA 1 cut(s) 525
EaeI YGGCCR 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 633
FaiI YATR 7 cut(s) 63, 70, 72, 323, 407, 467, 536
Fnu4HI GCNGC 2 cut(s) 365, 539
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 2 cut(s) 365, 539
FspBI CTAG 1 cut(s) 306
GluI GCNGC 2 cut(s) 365, 539
HaeIII GGCC 1 cut(s) 633
HinfI GANTC 1 cut(s) 677
HphI GGTGA 2 cut(s) 202, 247
Hpy166II GTNNAC 2 cut(s) 357, 577
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 2 cut(s) 357, 577
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 2 cut(s) 479, 554
HpyCH4V TGCA 4 cut(s) 58, 386, 538, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 489
HpyF3I CTNAG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 617
Lsp1109I GCAGC 2 cut(s) 376, 550
LweI GCATC 2 cut(s) 373, 709
MaeI CTAG 1 cut(s) 306
MalI GATC 1 cut(s) 619
MboI GATC 1 cut(s) 617
MboII GAAGA 4 cut(s) 226, 229, 672, 682
MfeI CAATTG 2 cut(s) 387, 423
MhlI GDGCHC 1 cut(s) 548
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 4 cut(s) 28, 387, 423, 604
MluNI TGGCCA 1 cut(s) 633
MnlI CCTC 5 cut(s) 138, 155, 193, 231, 263
Mox20I TGGCCA 1 cut(s) 633
MscI TGGCCA 1 cut(s) 633
MseI TTAA 4 cut(s) 137, 243, 261, 524
Msp20I TGGCCA 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 635
MunI CAATTG 2 cut(s) 387, 423
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 2 cut(s) 373, 489
NdeII GATC 1 cut(s) 617
NlaIV GGNNCC 1 cut(s) 597
PfeI GAWTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 2 cut(s) 366, 540
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 1 cut(s) 595
SaqAI TTAA 4 cut(s) 137, 243, 261, 524
SatI GCNGC 2 cut(s) 365, 539
Sau3AI GATC 1 cut(s) 617
Sau96I GGNCC 1 cut(s) 595
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 1 cut(s) 548
SetI ASST 8 cut(s) 40, 47, 129, 137, 242, 274, 328, 369
SfaNI GCATC 2 cut(s) 373, 709
SfcI CTRYAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 595
Sse9I AATT 4 cut(s) 28, 387, 423, 604
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 479, 554
TaqI TCGA 1 cut(s) 616
TasI AATT 4 cut(s) 28, 387, 423, 604
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 4 cut(s) 137, 243, 261, 524
Tru9I TTAA 4 cut(s) 137, 243, 261, 524
TscAI CASTG 3 cut(s) 178, 548, 606
TseI GCWGC 2 cut(s) 364, 538
TspRI CASTG 3 cut(s) 178, 548, 606
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 1 cut(s) 604
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.