Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Forward (+)

15054738 .. 15059098

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAACTGGAGTAGCCCTCAGAGCTTTCCGGAAGAGAATCATTCCTTCCTTCTCATCGCGAATTTCCGCTTTACCCTTCAATTCTCGATCCATTAGCACACTGGTACTAGCCGAACACGAAGGCAGCTCTCTCAAAATCCAATCCCTGAGCGCAGTGACGGCAGCCAAGTCCTTAAGCAAGAACAACTCCATTTCATTGCTCTTGGCAGGGTCCGGCCCTGGCCTCCACGAAGCCGCCGCGCAAGCCGCTTCGTGCGACCCTTCAGTGTCTGAGGTGCTTGTGGCGGATTCTGATGAGTTTAGTTATCCTTTAGCTGAACCTTGGGCTAAATTAGTCCAGTTGGTTCAGCAGAAAGGCGGGTACTCGCATGTGATGGCAACTTCGGGTTCGTTTGGGAAGAACATAATCCCTAGGGCAGCTGCGCTTTTGGATGTTTCTCCAGTCACGGATGTGACTAAGATATCCGAGCCTCATCTGTTTGTCAGGCCAATATACGCTGGAAATGCACTTTGTACTGTTCGATACACTGGTGTTGGCCCTTGTCTGTTGACCGTTAGAGCGACATCCTTTCCGGTTATTCCCATCACATCTGATACAAAATCTAATGAAGCTTCCATCTCCCAGGTTGATCTCTCCACCTTTGGTGAAGATTCTGTAGGCAAATCTCGATACGTAAAGCACACAGCCCAAGATTTAGAGCGCCCTGATCTTGGAAGTGCCCGTGTTGTGGTTACTGGCGGGCGTGCGCTGAAAAGTGCTGAAAACTTCAAAATGATAGAGAAGCTTGCAGAAAAACTTGGTGCAGCTGTTGGAGCTACTCGTGCTGCTGTTGATGCAGGGTATGTTCCTAATGACCTGCAGGTTGGCCAAACTGGAAAGATAGTTGCCCCAGAGTTGTACATGGCCTTTGGTGTTTCAGGAGCCATTCAACACTTGGCAGGCATGCGAGATTCCAAGGTCATTGTTGCTGTGAATAAAGATGCAGATGCACCCATATTTCAGGTTGCGGACTATGGACTTGTAGGTGATATATTTGATTTGATACCAGAGTTGCTGGAGAAGCTTCCTGAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

361

Amino Acids

37.94

Weight (kDa)

7.7

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	34 - 211	4.3e-35	Electron transfer flavoprotein domain
ETF_alpha	PF00766	237 - 317	9.9e-36	Electron transfer flavoprotein FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	853, 867
AccII	CGCG	2 cut(s)	61, 242
AccIII	TCCGGA	1 cut(s)	30
AciI	CCGC	8 cut(s)	69, 237, 240, 249, 287, 360, 741, 1010
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	4 cut(s)	108, 365, 517, 902
AfiI	CCNNNNNNNGG	2 cut(s)	713, 730
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	82, 772, 932
AjnI	CCWGG	2 cut(s)	220, 624
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	9 cut(s)	26, 129, 317, 422, 614, 787, 809, 818, 1066
AluI	AGCT	9 cut(s)	26, 129, 317, 422, 614, 787, 809, 818, 1066
AlwI	GGATC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	6 cut(s)	217, 223, 488, 538, 868, 906
ApeKI	GCWGC	6 cut(s)	126, 164, 419, 422, 806, 827
ApoI	RAATTY	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	413
AspLEI	GCGC	5 cut(s)	155, 244, 427, 705, 751
AspS9I	GGNCC	3 cut(s)	213, 218, 539
AsuHPI	GGTGA	2 cut(s)	659, 1040
AvaII	GGWCC	1 cut(s)	213
AvrII	CCTAGG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	724
BaeI	ACNNNNGTAYC	4 cut(s)	517, 550, 1037, 1070
BalI	TGGCCA	1 cut(s)	870
BauI	CACGAG	1 cut(s)	822
BbvI	GCAGC	6 cut(s)	138, 176, 409, 431, 814, 818
BccI	CCATC	3 cut(s)	370, 593, 626
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	222, 626
BfaI	CTAG	2 cut(s)	110, 414
BfmI	CTRYAG	2 cut(s)	657, 860
BfoI	RGCGCY	1 cut(s)	706
BfrI	CTTAAG	1 cut(s)	175
BfuAI	ACCTGC	2 cut(s)	853, 867
BisI	GCNGC	9 cut(s)	127, 165, 237, 240, 249, 420, 423, 807, 828
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	9 cut(s)	128, 166, 238, 241, 250, 421, 424, 808, 829
Bme1390I	CCNGG	2 cut(s)	222, 626
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	213, 218, 539
BmiI	GGNNCC	2 cut(s)	214, 925
BmrFI	CCNGG	2 cut(s)	222, 626
BmsI	GCATC	3 cut(s)	826, 973, 979
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	3 cut(s)	30, 426, 1079
Bpu10I	CCTNAGC	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	5 cut(s)	220, 323, 413, 624, 957
BsaWI	WCCGGW	2 cut(s)	30, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 730
Bse1I	ACTGG	7 cut(s)	13, 108, 340, 443, 535, 742, 880
Bse3DI	GCAATG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	222, 626
BseDI	CCNNGG	5 cut(s)	220, 323, 413, 624, 957
BseGI	GGATG	3 cut(s)	439, 457, 566
BseLI	CCNNNNNNNGG	2 cut(s)	713, 730
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	4 cut(s)	34, 140, 264, 1062
BseNI	ACTGG	7 cut(s)	13, 108, 340, 443, 535, 742, 880
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	6 cut(s)	138, 176, 409, 431, 814, 818
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	2 cut(s)	61, 242
BshFI	GGCC	6 cut(s)	219, 225, 490, 540, 870, 908
BsiSI	CCGG	3 cut(s)	31, 216, 575
BslI	CCNNNNNNNGG	2 cut(s)	713, 730
BsnI	GGCC	6 cut(s)	219, 225, 490, 540, 870, 908
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp13I	TCCGGA	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	3 cut(s)	89, 631, 709
Bsp68I	TCGCGA	1 cut(s)	61
BspACI	CCGC	8 cut(s)	69, 237, 240, 249, 287, 360, 741, 1010
BspANI	GGCC	6 cut(s)	219, 225, 490, 540, 870, 908
BspCNI	CTCAG	4 cut(s)	33, 141, 265, 1063
BspEI	TCCGGA	1 cut(s)	30
BspFNI	CGCG	2 cut(s)	61, 242
BspLI	GGNNCC	2 cut(s)	214, 925
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	2 cut(s)	853, 867
BspPI	GGATC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	7 cut(s)	13, 108, 340, 443, 535, 742, 880
BssECI	CCNNGG	5 cut(s)	220, 323, 413, 624, 957
BssMI	GATC	3 cut(s)	89, 631, 709
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	3 cut(s)	323, 413, 957
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	2 cut(s)	222, 626
Bst4CI	ACNGT	2 cut(s)	520, 556
Bst6I	CTCTTC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	900
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	6 cut(s)	246, 743, 747, 789, 943, 947
BstDEI	CTNAG	5 cut(s)	20, 149, 273, 459, 1071
BstF5I	GGATG	3 cut(s)	439, 457, 566
BstFNI	CGCG	2 cut(s)	61, 242
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	5 cut(s)	155, 244, 427, 705, 751
BstKTI	GATC	3 cut(s)	92, 634, 712
BstMBI	GATC	3 cut(s)	89, 631, 709
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 161, 245, 248, 506, 815, 824, 836, 1063
BstNI	CCWGG	2 cut(s)	222, 626
BstNSI	RCATGY	2 cut(s)	374, 949
BstSCI	CCNGG	2 cut(s)	220, 624
BstSFI	CTRYAG	2 cut(s)	657, 860
BstSLI	GKGCMC	1 cut(s)	724
BstSNI	TACGTA	1 cut(s)	676
BstUI	CGCG	2 cut(s)	61, 242
BstV1I	GCAGC	6 cut(s)	138, 176, 409, 431, 814, 818
BsuRI	GGCC	6 cut(s)	219, 225, 490, 540, 870, 908
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	439, 457, 566
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	4 cut(s)	101, 162, 273, 528
BtuMI	TCGCGA	1 cut(s)	61
BveI	ACCTGC	2 cut(s)	853, 867
Cac8I	GCNNGC	6 cut(s)	246, 743, 747, 789, 943, 947
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	5 cut(s)	155, 244, 427, 705, 751
Cfr13I	GGNCC	3 cut(s)	213, 218, 539
Csp6I	GTAC	4 cut(s)	107, 364, 516, 901
CviAII	CATG	3 cut(s)	371, 904, 946
CviQI	GTAC	4 cut(s)	107, 364, 516, 901
DdeI	CTNAG	5 cut(s)	20, 149, 273, 459, 1071
DpnI	GATC	3 cut(s)	91, 633, 711
DpnII	GATC	3 cut(s)	89, 631, 709
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	302
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	3 cut(s)	323, 413, 957
Eco32I	GATATC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	220, 624
EcoRV	GATATC	1 cut(s)	465
EcoT14I	CCWWGG	3 cut(s)	323, 413, 957
ErhI	CCWWGG	3 cut(s)	323, 413, 957
FaeI	CATG	3 cut(s)	374, 907, 949
FaiI	YATR	9 cut(s)	372, 407, 496, 846, 905, 947, 998, 1017, 1034
FatI	CATG	3 cut(s)	370, 903, 945
FauI	CCCGC	2 cut(s)	353, 734
Fnu4HI	GCNGC	9 cut(s)	127, 165, 237, 240, 249, 420, 423, 807, 828
FokI	GGATG	3 cut(s)	446, 464, 553
Fsp4HI	GCNGC	9 cut(s)	127, 165, 237, 240, 249, 420, 423, 807, 828
FspBI	CTAG	2 cut(s)	110, 414
GlaI	GCGC	5 cut(s)	154, 243, 426, 704, 750
GluI	GCNGC	9 cut(s)	127, 165, 237, 240, 249, 420, 423, 807, 828
GsuI	CTGGAG	3 cut(s)	30, 426, 1079
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	6 cut(s)	219, 225, 490, 540, 870, 908
HapII	CCGG	3 cut(s)	31, 216, 575
HhaI	GCGC	5 cut(s)	155, 244, 427, 705, 751
Hin1II	CATG	3 cut(s)	374, 907, 949
Hin6I	GCGC	5 cut(s)	153, 242, 425, 703, 749
HinP1I	GCGC	5 cut(s)	153, 242, 425, 703, 749
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	3 cut(s)	612, 785, 1064
HinfI	GANTC	4 cut(s)	39, 290, 653, 953
HpaII	CCGG	3 cut(s)	31, 216, 575
HphI	GGTGA	2 cut(s)	659, 1040
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	5 cut(s)	23, 274, 295, 469, 595
Hpy188III	TCNNGA	6 cut(s)	31, 60, 87, 669, 921, 1070
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	5 cut(s)	57, 61, 88, 116, 273
HpyCH4III	ACNGT	2 cut(s)	520, 556
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	7 cut(s)	509, 791, 806, 839, 862, 986, 992
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 161, 245, 248, 506, 815, 824, 836, 1063
HpyF3I	CTNAG	5 cut(s)	20, 149, 273, 459, 1071
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	3 cut(s)	374, 907, 949
HspAI	GCGC	5 cut(s)	153, 242, 425, 703, 749
Kpn2I	TCCGGA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	89, 631, 709
LmnI	GCTCC	2 cut(s)	815, 923
Lsp1109I	GCAGC	6 cut(s)	138, 176, 409, 431, 814, 818
LweI	GCATC	3 cut(s)	826, 973, 979
MaeI	CTAG	2 cut(s)	110, 414
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	4 cut(s)	157, 445, 454, 733
MalI	GATC	3 cut(s)	91, 633, 711
MboI	GATC	3 cut(s)	89, 631, 709
MboII	GAAGA	3 cut(s)	46, 412, 662
MhlI	GDGCHC	1 cut(s)	724
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	3 cut(s)	63, 82, 332
MluNI	TGGCCA	1 cut(s)	870
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	4 cut(s)	29, 236, 268, 483
Mox20I	TGGCCA	1 cut(s)	870
MroI	TCCGGA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	422, 809
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	3 cut(s)	31, 216, 575
MspR9I	CCNGG	2 cut(s)	222, 626
MvaI	CCWGG	2 cut(s)	222, 626
MvnI	CGCG	2 cut(s)	61, 242
MwoI	GCNNNNNNNGC	9 cut(s)	23, 161, 245, 248, 506, 815, 824, 836, 1063
NdeII	GATC	3 cut(s)	89, 631, 709
NlaIII	CATG	3 cut(s)	374, 907, 949
NlaIV	GGNNCC	2 cut(s)	214, 925
NmuCI	GTSAC	3 cut(s)	157, 445, 454
NruI	TCGCGA	1 cut(s)	61
NspI	RCATGY	2 cut(s)	374, 949
OliI	CACNNNNGTG	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	949
PfeI	GAWTC	4 cut(s)	39, 290, 653, 953
PkrI	GCNGC	9 cut(s)	128, 166, 238, 241, 250, 421, 424, 808, 829
Ppu21I	YACGTR	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	220, 624
PspGI	CCWGG	2 cut(s)	220, 624
PspN4I	GGNNCC	2 cut(s)	214, 925
PspPI	GGNCC	3 cut(s)	213, 218, 539
PstI	CTGCAG	1 cut(s)	864
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	2 cut(s)	422, 809
RruI	TCGCGA	1 cut(s)	61
RsaI	GTAC	4 cut(s)	108, 365, 517, 902
RsaNI	GTAC	4 cut(s)	107, 364, 516, 901
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	9 cut(s)	127, 165, 237, 240, 249, 420, 423, 807, 828
Sau3AI	GATC	3 cut(s)	89, 631, 709
Sau96I	GGNCC	3 cut(s)	213, 218, 539
SbfI	CCTGCAGG	1 cut(s)	864
ScrFI	CCNGG	2 cut(s)	222, 626
SdaI	CCTGCAGG	1 cut(s)	864
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	3 cut(s)	826, 973, 979
SfcI	CTRYAG	2 cut(s)	657, 860
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
SnaBI	TACGTA	1 cut(s)	676
SphI	GCATGC	1 cut(s)	949
Sse8387I	CCTGCAGG	1 cut(s)	864
Sse9I	AATT	3 cut(s)	63, 82, 332
SsiI	CCGC	8 cut(s)	69, 237, 240, 249, 287, 360, 741, 1010
SspMI	CTAG	2 cut(s)	110, 414
StyD4I	CCNGG	2 cut(s)	220, 624
StyI	CCWWGG	3 cut(s)	323, 413, 957
TaaI	ACNGT	2 cut(s)	520, 556
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	3 cut(s)	88, 523, 670
TasI	AATT	3 cut(s)	63, 82, 332
TatI	WGTACW	2 cut(s)	515, 900
TauI	GCSGC	3 cut(s)	239, 242, 251
TfiI	GAWTC	4 cut(s)	39, 290, 653, 953
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	4 cut(s)	108, 162, 273, 535
TseFI	GTSAC	3 cut(s)	157, 445, 454
TseI	GCWGC	6 cut(s)	126, 164, 419, 422, 806, 827
Tsp45I	GTSAC	3 cut(s)	157, 445, 454
TspDTI	ATGAA	2 cut(s)	186, 624
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	4 cut(s)	108, 162, 273, 535
Vha464I	CTTAAG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	2 cut(s)	374, 949
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 934
XmaJI	CCTAGG	1 cut(s)	413
XspI	CTAG	2 cut(s)	110, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.