Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Forward (+)

32625988 .. 32631095

Gene Structure 5108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATAATATTCTGATTTTTCTCATTTTACAATTGAAGGCAAAAATCACCATTTCTCCACCATTTATTGATAAAATAAAAAATAAAATCAAAGTTGTCTACATTATTCAAACTCCATCATCAGTTCATCACTATCCCCAAAAACACAGGAGAGCAATGGCAACTGGAGCAGCCTTCAGAGCTTTCAGTAAACGAATCATTCCTTCCTTCACATCCCAAGCCTTCGCTTCAACCTTCAATTCTCGATCCATTAGCACGCTGGTTTTAGCTGAACATGAAGGTAGCTCTCTCAAAATCCAATCCGTGAGCGCAGTAAAGGCAGCCAAGTCTCTAAGCAAGGACAACTCCATTTCGTTGCTGTTGGCTGGGTCCGGCCCTGGCCTCCATGAGGCCGCCGCACAAGCGGCTTCGTGCGACCCTTCAGTGTCTCAGGTGCTTGTGGCTGATTCTGATGAGTTTAGTCATCCTCTGGCAGAACCTTGGGCTAAACTGGTCCAGTTGGTTCAGCAGAAAGGCGGGTACTCACATGTGATCACAACTTCAGGATCATTTGGGAAGAACATAATGCCACGGGCAGCTGCTCTTTTGGATGTTTCTCCAATCACGGATGTGACTGGAATCTCCGAGCCTCATCTATTTGTCAGGCCAATATATGCTGGAAATGCACTTTGTACTGTTCGATACACTGGTGTTGGCCCTTGTCTGTTGACCATTAGAGCAACATCCTTTCCGGTTTCTCCCATCACATCTGATTCAAAATCTAATGAAGCTTCCATCTCCCAGGTTGATCTCTCCACCTTTGGTGAAGATTCTGTTGGCAAATCTCGATATGTTAAGCACACATCCCAGGATATAGAGCGCCCTGATCTTGGAAATGCCCGTGTTGTGATTACAGGTGGGCGTGCGCTAAAAAGTGCTGAAAACTTCAAAATGATAGAAAAGCTTGCAGAAAAACTTGGTGCAGCTGTTGGAGCTACCCGTGCTGCTGTTGATGCAGGATATGTTCCTAATGACCTGCAGGTTGGCCAAACTGGAAAGATAGTTGCCCCAGAGTTGTACATGGCCTTTGGTGTTTCAGGAGCCATTCAACACTTGGCAGGCATGCGAGATTCCAAGTACATTGTTGCTGTGAACAAAGATGCAGATGCACCAATATTTCAGGTGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

390

Amino Acids

41.54

Weight (kDa)

9.33

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	86 - 263	2.5e-34	Electron transfer flavoprotein domain
ETF_alpha	PF00766	289 - 369	2.2e-35	Electron transfer flavoprotein FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1009, 1023
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	4 cut(s)	393, 396, 404, 516
AclWI	GGATC	2 cut(s)	240, 553
AcoI	YGGCCR	1 cut(s)	1024
AcuI	CTGAAG	3 cut(s)	160, 405, 525
AfaI	GTAC	4 cut(s)	521, 673, 1058, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	388, 869
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	7 cut(s)	37, 110, 231, 238, 756, 928, 1088
AjnI	CCWGG	3 cut(s)	376, 780, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	798, 830
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	8 cut(s)	182, 269, 285, 578, 770, 943, 965, 974
AluI	AGCT	8 cut(s)	182, 269, 285, 578, 770, 943, 965, 974
Alw26I	GTCTC	2 cut(s)	333, 432
AlwI	GGATC	2 cut(s)	240, 553
AoxI	GGCC	7 cut(s)	373, 379, 390, 644, 694, 1024, 1062
ApeKI	GCWGC	6 cut(s)	170, 320, 575, 578, 962, 983
AspLEI	GCGC	3 cut(s)	311, 861, 907
AspS9I	GGNCC	4 cut(s)	369, 374, 493, 695
AsuHPI	GGTGA	2 cut(s)	40, 815
AvaII	GGWCC	2 cut(s)	369, 493
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BalI	TGGCCA	1 cut(s)	1026
BbvI	GCAGC	6 cut(s)	182, 332, 565, 587, 970, 974
BccI	CCATC	3 cut(s)	124, 749, 782
BciT130I	CCWGG	3 cut(s)	378, 782, 848
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	333, 432
BfmI	CTRYAG	1 cut(s)	1016
BfoI	RGCGCY	1 cut(s)	862
BfuAI	ACCTGC	2 cut(s)	1009, 1023
BisI	GCNGC	9 cut(s)	171, 321, 393, 396, 405, 576, 579, 963, 984
BlsI	GCNGC	9 cut(s)	172, 322, 394, 397, 406, 577, 580, 964, 985
Bme1390I	CCNGG	3 cut(s)	378, 782, 848
Bme18I	GGWCC	2 cut(s)	369, 493
BmgT120I	GGNCC	4 cut(s)	369, 374, 493, 695
BmiI	GGNNCC	2 cut(s)	370, 1081
BmrFI	CCNGG	3 cut(s)	378, 782, 848
BmsI	GCATC	3 cut(s)	982, 1129, 1135
BpmI	CTGGAG	1 cut(s)	186
BsaJI	CCNNGG	5 cut(s)	376, 479, 569, 780, 846
BsaWI	WCCGGW	1 cut(s)	730
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 869
Bse1I	ACTGG	6 cut(s)	169, 495, 496, 619, 691, 1036
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	378, 782, 848
BseDI	CCNNGG	5 cut(s)	376, 479, 569, 780, 846
BseGI	GGATG	6 cut(s)	212, 463, 595, 613, 722, 842
BseLI	CCNNNNNNNGG	2 cut(s)	388, 869
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	6 cut(s)	169, 495, 496, 619, 691, 1036
BseXI	GCAGC	6 cut(s)	182, 332, 565, 587, 970, 974
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	981
BshFI	GGCC	7 cut(s)	375, 381, 392, 646, 696, 1026, 1064
BsiSI	CCGG	2 cut(s)	372, 731
BslI	CCNNNNNNNGG	2 cut(s)	388, 869
BsmAI	GTCTC	2 cut(s)	333, 432
BsnI	GGCC	7 cut(s)	375, 381, 392, 646, 696, 1026, 1064
Bsp1407I	TGTACA	1 cut(s)	1056
Bsp143I	GATC	5 cut(s)	245, 531, 545, 787, 865
BspACI	CCGC	4 cut(s)	393, 396, 404, 516
BspANI	GGCC	7 cut(s)	375, 381, 392, 646, 696, 1026, 1064
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	370, 1081
BspMAI	CTGCAG	1 cut(s)	1020
BspMI	ACCTGC	2 cut(s)	1009, 1023
BspPI	GGATC	2 cut(s)	240, 553
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	1056
BsrI	ACTGG	6 cut(s)	169, 495, 496, 619, 691, 1036
BssECI	CCNNGG	5 cut(s)	376, 479, 569, 780, 846
BssMI	GATC	5 cut(s)	245, 531, 545, 787, 865
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	3 cut(s)	378, 782, 848
Bst4CI	ACNGT	1 cut(s)	676
BstAUI	TGTACA	1 cut(s)	1056
BstC8I	GCNNGC	5 cut(s)	257, 903, 945, 1099, 1103
BstDEI	CTNAG	2 cut(s)	332, 429
BstDSI	CCRYGG	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	6 cut(s)	212, 463, 595, 613, 722, 842
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	3 cut(s)	311, 861, 907
BstKTI	GATC	5 cut(s)	248, 534, 548, 790, 868
BstMAI	GTCTC	2 cut(s)	333, 432
BstMBI	GATC	5 cut(s)	245, 531, 545, 787, 865
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 179, 317, 401, 404, 662, 971, 980, 992
BstNI	CCWGG	3 cut(s)	378, 782, 848
BstNSI	RCATGY	2 cut(s)	530, 1105
BstSCI	CCNGG	3 cut(s)	376, 780, 846
BstSFI	CTRYAG	1 cut(s)	1016
BstV1I	GCAGC	6 cut(s)	182, 332, 565, 587, 970, 974
BsuRI	GGCC	7 cut(s)	375, 381, 392, 646, 696, 1026, 1064
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	6 cut(s)	212, 463, 595, 613, 722, 842
BtsIMutI	CAGTG	2 cut(s)	429, 684
BveI	ACCTGC	2 cut(s)	1009, 1023
Cac8I	GCNNGC	5 cut(s)	257, 903, 945, 1099, 1103
CfoI	GCGC	3 cut(s)	311, 861, 907
Cfr13I	GGNCC	4 cut(s)	369, 374, 493, 695
Csp6I	GTAC	4 cut(s)	520, 672, 1057, 1117
CviAII	CATG	5 cut(s)	275, 386, 527, 1060, 1102
CviQI	GTAC	4 cut(s)	520, 672, 1057, 1117
DdeI	CTNAG	2 cut(s)	332, 429
DpnI	GATC	5 cut(s)	247, 533, 547, 789, 867
DpnII	GATC	5 cut(s)	245, 531, 545, 787, 865
EaeI	YGGCCR	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	369, 493
Eco57I	CTGAAG	3 cut(s)	160, 405, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRII	CCWGG	3 cut(s)	376, 780, 846
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	5 cut(s)	278, 389, 530, 1063, 1105
FatI	CATG	5 cut(s)	274, 385, 526, 1059, 1101
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	9 cut(s)	171, 321, 393, 396, 405, 576, 579, 963, 984
FokI	GGATG	6 cut(s)	199, 450, 602, 620, 709, 829
Fsp4HI	GCNGC	9 cut(s)	171, 321, 393, 396, 405, 576, 579, 963, 984
GlaI	GCGC	3 cut(s)	310, 860, 906
GluI	GCNGC	9 cut(s)	171, 321, 393, 396, 405, 576, 579, 963, 984
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	7 cut(s)	375, 381, 392, 646, 696, 1026, 1064
HapII	CCGG	2 cut(s)	372, 731
HhaI	GCGC	3 cut(s)	311, 861, 907
Hin1II	CATG	5 cut(s)	278, 389, 530, 1063, 1105
Hin6I	GCGC	3 cut(s)	309, 859, 905
HinP1I	GCGC	3 cut(s)	309, 859, 905
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	2 cut(s)	768, 941
HinfI	GANTC	6 cut(s)	195, 446, 618, 752, 809, 1109
HpaII	CCGG	2 cut(s)	372, 731
HphI	GGTGA	2 cut(s)	40, 815
Hpy166II	GTNNAC	4 cut(s)	100, 191, 708, 1132
Hpy188I	TCNGA	5 cut(s)	15, 179, 451, 625, 751
Hpy188III	TCNNGA	4 cut(s)	243, 543, 825, 1077
Hpy8I	GTNNAC	4 cut(s)	100, 191, 708, 1132
HpyAV	CCTTC	8 cut(s)	31, 184, 213, 217, 232, 244, 272, 429
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4V	TGCA	7 cut(s)	665, 947, 962, 995, 1018, 1142, 1148
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 179, 317, 401, 404, 662, 971, 980, 992
HpyF3I	CTNAG	2 cut(s)	332, 429
Hsp92II	CATG	5 cut(s)	278, 389, 530, 1063, 1105
HspAI	GCGC	3 cut(s)	309, 859, 905
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	5 cut(s)	245, 531, 545, 787, 865
LmnI	GCTCC	3 cut(s)	167, 971, 1079
Lsp1109I	GCAGC	6 cut(s)	182, 332, 565, 587, 970, 974
LweI	GCATC	3 cut(s)	982, 1129, 1135
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	247, 533, 547, 789, 867
MboI	GATC	5 cut(s)	245, 531, 545, 787, 865
MboII	GAAGA	2 cut(s)	568, 818
MfeI	CAATTG	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	1026
MluCI	AATT	2 cut(s)	32, 238
MluNI	TGGCCA	1 cut(s)	1026
MmeI	TCCRAC	1 cut(s)	949
MnlI	CCTC	4 cut(s)	382, 392, 477, 639
Mox20I	TGGCCA	1 cut(s)	1026
MscI	TGGCCA	1 cut(s)	1026
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	1026
MspA1I	CMGCKG	2 cut(s)	578, 965
MspI	CCGG	2 cut(s)	372, 731
MspR9I	CCNGG	3 cut(s)	378, 782, 848
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	3 cut(s)	378, 782, 848
MwoI	GCNNNNNNNGC	9 cut(s)	167, 179, 317, 401, 404, 662, 971, 980, 992
NdeII	GATC	5 cut(s)	245, 531, 545, 787, 865
NlaIII	CATG	5 cut(s)	278, 389, 530, 1063, 1105
NlaIV	GGNNCC	2 cut(s)	370, 1081
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	2 cut(s)	530, 1105
OliI	CACNNNNGTG	1 cut(s)	608
PaeI	GCATGC	1 cut(s)	1105
PciI	ACATGT	1 cut(s)	526
PfeI	GAWTC	6 cut(s)	195, 446, 618, 752, 809, 1109
PkrI	GCNGC	9 cut(s)	172, 322, 394, 397, 406, 577, 580, 964, 985
PscI	ACATGT	1 cut(s)	526
Psp6I	CCWGG	3 cut(s)	376, 780, 846
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	3 cut(s)	376, 780, 846
PspN4I	GGNNCC	2 cut(s)	370, 1081
PspPI	GGNCC	4 cut(s)	369, 374, 493, 695
PstI	CTGCAG	1 cut(s)	1020
PvuII	CAGCTG	2 cut(s)	578, 965
RsaI	GTAC	4 cut(s)	521, 673, 1058, 1118
RsaNI	GTAC	4 cut(s)	520, 672, 1057, 1117
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	9 cut(s)	171, 321, 393, 396, 405, 576, 579, 963, 984
Sau3AI	GATC	5 cut(s)	245, 531, 545, 787, 865
Sau96I	GGNCC	4 cut(s)	369, 374, 493, 695
SbfI	CCTGCAGG	1 cut(s)	1020
ScrFI	CCNGG	3 cut(s)	378, 782, 848
SdaI	CCTGCAGG	1 cut(s)	1020
SfaNI	GCATC	3 cut(s)	982, 1129, 1135
SfcI	CTRYAG	1 cut(s)	1016
SinI	GGWCC	2 cut(s)	369, 493
SmiMI	CAYNNNNRTG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	1105
Sse8387I	CCTGCAGG	1 cut(s)	1020
Sse9I	AATT	2 cut(s)	32, 238
SsiI	CCGC	4 cut(s)	393, 396, 404, 516
SspI	AATATT	2 cut(s)	10, 1155
StyD4I	CCNGG	3 cut(s)	376, 780, 846
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	676
TaqI	TCGA	3 cut(s)	244, 679, 826
TasI	AATT	2 cut(s)	32, 238
TatI	WGTACW	3 cut(s)	671, 1056, 1116
TauI	GCSGC	3 cut(s)	395, 398, 407
TfiI	GAWTC	6 cut(s)	195, 446, 618, 752, 809, 1109
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	2 cut(s)	429, 691
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	6 cut(s)	170, 320, 575, 578, 962, 983
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	116, 291, 780
TspGWI	ACGGA	2 cut(s)	292, 620
TspRI	CASTG	2 cut(s)	429, 691
VpaK11BI	GGWCC	2 cut(s)	369, 493
XagI	CCTNNNNNAGG	1 cut(s)	386
XceI	RCATGY	2 cut(s)	530, 1105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	256, 1090
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.